Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00655 and HER17_RS00660 are separated by 192 nucleotides HER17_RS00660 and HER17_RS00665 overlap by 4 nucleotides HER17_RS00665 and HER17_RS00670 are separated by 153 nucleotides
HER17_RS00655: HER17_RS00655 - hypothetical protein, at 149,460 to 151,634
_RS00655
HER17_RS00660: HER17_RS00660 - envelope stress sensor histidine kinase CpxA, at 151,827 to 153,197
_RS00660
HER17_RS00665: HER17_RS00665 - envelope stress response regulator transcription factor CpxR, at 153,194 to 153,892
_RS00665
HER17_RS00670: HER17_RS00670 - cell-envelope stress modulator CpxP, at 154,046 to 154,570
_RS00670
Position (kb) 151
152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.833 kb on + strand, within HER17_RS00655 at 150.854 kb on - strand, within HER17_RS00655 at 150.905 kb on + strand, within HER17_RS00655 at 150.905 kb on + strand, within HER17_RS00655 at 150.905 kb on + strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.906 kb on - strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.907 kb on + strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 150.908 kb on - strand, within HER17_RS00655 at 151.015 kb on + strand, within HER17_RS00655 at 151.015 kb on + strand, within HER17_RS00655 at 151.016 kb on - strand, within HER17_RS00655 at 151.016 kb on - strand, within HER17_RS00655 at 151.016 kb on - strand, within HER17_RS00655 at 151.050 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.056 kb on + strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.057 kb on - strand, within HER17_RS00655 at 151.085 kb on + strand, within HER17_RS00655 at 151.086 kb on - strand, within HER17_RS00655 at 151.086 kb on - strand, within HER17_RS00655 at 151.086 kb on - strand, within HER17_RS00655 at 151.087 kb on + strand, within HER17_RS00655 at 151.088 kb on - strand, within HER17_RS00655 at 151.209 kb on - strand, within HER17_RS00655 at 151.247 kb on + strand, within HER17_RS00655 at 151.248 kb on - strand, within HER17_RS00655 at 151.485 kb on - strand at 151.513 kb on + strand at 151.514 kb on - strand at 151.641 kb on + strand at 151.641 kb on + strand at 151.642 kb on - strand at 151.696 kb on - strand at 151.724 kb on + strand at 151.726 kb on + strand at 151.726 kb on + strand at 151.727 kb on - strand at 151.727 kb on - strand at 151.740 kb on + strand at 151.741 kb on - strand at 151.786 kb on + strand at 151.788 kb on + strand at 151.788 kb on + strand at 151.913 kb on + strand at 151.913 kb on + strand at 152.107 kb on + strand, within HER17_RS00660 at 152.244 kb on + strand, within HER17_RS00660 at 152.384 kb on + strand, within HER17_RS00660 at 152.583 kb on + strand, within HER17_RS00660 at 152.584 kb on - strand, within HER17_RS00660 at 152.584 kb on - strand, within HER17_RS00660 at 152.776 kb on + strand, within HER17_RS00660 at 152.776 kb on + strand, within HER17_RS00660 at 153.021 kb on - strand, within HER17_RS00660 at 153.189 kb on - strand at 153.189 kb on - strand at 153.216 kb on + strand at 153.239 kb on - strand at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.292 kb on + strand, within HER17_RS00665 at 153.293 kb on - strand, within HER17_RS00665 at 153.293 kb on - strand, within HER17_RS00665 at 153.293 kb on - strand, within HER17_RS00665 at 153.293 kb on - strand, within HER17_RS00665 at 153.293 kb on - strand, within HER17_RS00665 at 153.336 kb on - strand, within HER17_RS00665 at 153.396 kb on + strand, within HER17_RS00665 at 153.476 kb on + strand, within HER17_RS00665 at 153.477 kb on - strand, within HER17_RS00665 at 153.477 kb on - strand, within HER17_RS00665 at 153.477 kb on - strand, within HER17_RS00665 at 153.477 kb on - strand, within HER17_RS00665 at 153.587 kb on - strand, within HER17_RS00665 at 153.604 kb on - strand, within HER17_RS00665 at 153.667 kb on + strand, within HER17_RS00665 at 153.667 kb on + strand, within HER17_RS00665 at 153.668 kb on - strand, within HER17_RS00665 at 153.695 kb on + strand, within HER17_RS00665 at 153.696 kb on - strand, within HER17_RS00665 at 153.696 kb on - strand, within HER17_RS00665 at 153.705 kb on - strand, within HER17_RS00665 at 153.709 kb on + strand, within HER17_RS00665 at 153.709 kb on + strand, within HER17_RS00665 at 153.709 kb on + strand, within HER17_RS00665 at 153.743 kb on + strand, within HER17_RS00665 at 153.743 kb on + strand, within HER17_RS00665 at 153.744 kb on - strand, within HER17_RS00665 at 153.744 kb on - strand, within HER17_RS00665 at 153.744 kb on - strand, within HER17_RS00665 at 153.746 kb on + strand, within HER17_RS00665 at 153.747 kb on - strand, within HER17_RS00665 at 153.747 kb on - strand, within HER17_RS00665 at 153.747 kb on - strand, within HER17_RS00665 at 153.750 kb on - strand, within HER17_RS00665 at 153.750 kb on - strand, within HER17_RS00665 at 153.750 kb on - strand, within HER17_RS00665 at 153.767 kb on - strand, within HER17_RS00665 at 153.767 kb on - strand, within HER17_RS00665 at 153.770 kb on + strand, within HER17_RS00665 at 153.770 kb on + strand, within HER17_RS00665 at 153.770 kb on + strand, within HER17_RS00665 at 153.770 kb on + strand, within HER17_RS00665 at 153.770 kb on + strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.771 kb on - strand, within HER17_RS00665 at 153.773 kb on + strand, within HER17_RS00665 at 153.774 kb on - strand, within HER17_RS00665 at 153.774 kb on - strand, within HER17_RS00665 at 153.779 kb on + strand, within HER17_RS00665 at 153.799 kb on - strand, within HER17_RS00665 at 153.814 kb on + strand, within HER17_RS00665 at 153.815 kb on - strand, within HER17_RS00665 at 153.815 kb on - strand, within HER17_RS00665 at 153.815 kb on - strand, within HER17_RS00665 at 153.863 kb on - strand at 153.886 kb on + strand at 153.918 kb on + strand at 153.925 kb on + strand at 153.925 kb on + strand at 153.925 kb on + strand at 153.926 kb on - strand at 153.937 kb on - strand at 153.949 kb on + strand at 153.950 kb on - strand at 153.950 kb on - strand at 153.950 kb on - strand at 153.950 kb on - strand at 153.960 kb on - strand at 153.960 kb on - strand at 153.960 kb on - strand at 153.960 kb on - strand at 153.993 kb on + strand at 154.026 kb on - strand at 154.041 kb on + strand at 154.041 kb on + strand at 154.041 kb on + strand at 154.041 kb on + strand at 154.042 kb on - strand at 154.042 kb on - strand at 154.042 kb on - strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.065 kb on + strand at 154.066 kb on - strand at 154.066 kb on - strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.089 kb on + strand at 154.147 kb on + strand, within HER17_RS00670 at 154.189 kb on + strand, within HER17_RS00670 at 154.189 kb on + strand, within HER17_RS00670 at 154.189 kb on + strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 150,833 + HER17_RS00655 0.63 -1.4 150,854 - HER17_RS00655 0.64 +2.2 150,905 + HER17_RS00655 0.66 +0.2 150,905 + HER17_RS00655 0.66 -0.1 150,905 + HER17_RS00655 0.66 -0.7 150,906 - HER17_RS00655 0.66 +1.5 150,906 - HER17_RS00655 0.66 +0.4 150,906 - HER17_RS00655 0.66 -0.5 150,906 - HER17_RS00655 0.66 -0.4 150,906 - HER17_RS00655 0.66 +1.1 150,907 + HER17_RS00655 0.67 +0.9 150,907 + HER17_RS00655 0.67 -1.1 150,907 + HER17_RS00655 0.67 +0.5 150,907 + HER17_RS00655 0.67 +1.0 150,907 + HER17_RS00655 0.67 -0.3 150,908 - HER17_RS00655 0.67 +0.7 150,908 - HER17_RS00655 0.67 +1.1 150,908 - HER17_RS00655 0.67 +0.6 150,908 - HER17_RS00655 0.67 +0.0 151,015 + HER17_RS00655 0.71 +1.1 151,015 + HER17_RS00655 0.71 -0.1 151,016 - HER17_RS00655 0.72 -1.0 151,016 - HER17_RS00655 0.72 -1.1 151,016 - HER17_RS00655 0.72 +1.9 151,050 + HER17_RS00655 0.73 -0.7 151,056 + HER17_RS00655 0.73 +0.8 151,056 + HER17_RS00655 0.73 -0.9 151,056 + HER17_RS00655 0.73 +0.5 151,056 + HER17_RS00655 0.73 -1.9 151,057 - HER17_RS00655 0.73 +0.0 151,057 - HER17_RS00655 0.73 -0.3 151,057 - HER17_RS00655 0.73 -0.3 151,057 - HER17_RS00655 0.73 +0.5 151,057 - HER17_RS00655 0.73 -2.4 151,057 - HER17_RS00655 0.73 +0.6 151,085 + HER17_RS00655 0.75 -0.8 151,086 - HER17_RS00655 0.75 -0.1 151,086 - HER17_RS00655 0.75 -1.9 151,086 - HER17_RS00655 0.75 -2.0 151,087 + HER17_RS00655 0.75 -0.9 151,088 - HER17_RS00655 0.75 +1.1 151,209 - HER17_RS00655 0.80 +1.5 151,247 + HER17_RS00655 0.82 -0.3 151,248 - HER17_RS00655 0.82 -0.1 151,485 - -0.5 151,513 + +0.7 151,514 - +0.5 151,641 + +0.9 151,641 + +1.1 151,642 - +2.3 151,696 - +1.0 151,724 + +0.4 151,726 + -0.0 151,726 + +0.7 151,727 - +0.8 151,727 - -0.1 151,740 + -1.5 151,741 - +0.0 151,786 + +0.8 151,788 + -0.1 151,788 + -0.1 151,913 + -0.1 151,913 + -0.1 152,107 + HER17_RS00660 0.20 -0.1 152,244 + HER17_RS00660 0.30 -0.1 152,384 + HER17_RS00660 0.41 -0.1 152,583 + HER17_RS00660 0.55 +0.9 152,584 - HER17_RS00660 0.55 -0.7 152,584 - HER17_RS00660 0.55 -0.7 152,776 + HER17_RS00660 0.69 -0.1 152,776 + HER17_RS00660 0.69 +1.3 153,021 - HER17_RS00660 0.87 -0.7 153,189 - -0.3 153,189 - -0.8 153,216 + -0.4 153,239 - -2.3 153,292 + HER17_RS00665 0.14 +0.1 153,292 + HER17_RS00665 0.14 -0.5 153,292 + HER17_RS00665 0.14 +0.1 153,292 + HER17_RS00665 0.14 -0.9 153,292 + HER17_RS00665 0.14 -1.4 153,292 + HER17_RS00665 0.14 -0.8 153,292 + HER17_RS00665 0.14 -2.2 153,292 + HER17_RS00665 0.14 -0.7 153,293 - HER17_RS00665 0.14 -0.1 153,293 - HER17_RS00665 0.14 +0.1 153,293 - HER17_RS00665 0.14 +0.6 153,293 - HER17_RS00665 0.14 -0.7 153,293 - HER17_RS00665 0.14 -0.1 153,336 - HER17_RS00665 0.20 -1.3 153,396 + HER17_RS00665 0.29 +1.5 153,476 + HER17_RS00665 0.40 -0.5 153,477 - HER17_RS00665 0.40 -1.3 153,477 - HER17_RS00665 0.40 -0.7 153,477 - HER17_RS00665 0.40 +0.8 153,477 - HER17_RS00665 0.40 -1.1 153,587 - HER17_RS00665 0.56 -0.8 153,604 - HER17_RS00665 0.59 -2.5 153,667 + HER17_RS00665 0.68 -0.7 153,667 + HER17_RS00665 0.68 +0.9 153,668 - HER17_RS00665 0.68 -0.6 153,695 + HER17_RS00665 0.72 -0.3 153,696 - HER17_RS00665 0.72 -1.4 153,696 - HER17_RS00665 0.72 +0.4 153,705 - HER17_RS00665 0.73 -0.8 153,709 + HER17_RS00665 0.74 +0.3 153,709 + HER17_RS00665 0.74 -1.1 153,709 + HER17_RS00665 0.74 -1.3 153,743 + HER17_RS00665 0.79 -0.8 153,743 + HER17_RS00665 0.79 -0.5 153,744 - HER17_RS00665 0.79 +0.8 153,744 - HER17_RS00665 0.79 +2.1 153,744 - HER17_RS00665 0.79 +2.1 153,746 + HER17_RS00665 0.79 +0.9 153,747 - HER17_RS00665 0.79 -1.4 153,747 - HER17_RS00665 0.79 -0.7 153,747 - HER17_RS00665 0.79 -0.4 153,750 - HER17_RS00665 0.80 +0.4 153,750 - HER17_RS00665 0.80 -0.1 153,750 - HER17_RS00665 0.80 +0.2 153,767 - HER17_RS00665 0.82 +0.8 153,767 - HER17_RS00665 0.82 +0.2 153,770 + HER17_RS00665 0.82 -1.2 153,770 + HER17_RS00665 0.82 -0.1 153,770 + HER17_RS00665 0.82 -1.8 153,770 + HER17_RS00665 0.82 +0.9 153,770 + HER17_RS00665 0.82 -1.4 153,771 - HER17_RS00665 0.83 -0.8 153,771 - HER17_RS00665 0.83 -1.1 153,771 - HER17_RS00665 0.83 +0.1 153,771 - HER17_RS00665 0.83 -1.7 153,771 - HER17_RS00665 0.83 -1.8 153,771 - HER17_RS00665 0.83 +0.9 153,771 - HER17_RS00665 0.83 -0.5 153,771 - HER17_RS00665 0.83 -3.2 153,773 + HER17_RS00665 0.83 -0.1 153,774 - HER17_RS00665 0.83 +0.3 153,774 - HER17_RS00665 0.83 -0.5 153,779 + HER17_RS00665 0.84 -0.1 153,799 - HER17_RS00665 0.87 -1.2 153,814 + HER17_RS00665 0.89 +0.5 153,815 - HER17_RS00665 0.89 -0.5 153,815 - HER17_RS00665 0.89 +0.0 153,815 - HER17_RS00665 0.89 -1.5 153,863 - -1.4 153,886 + -0.7 153,918 + +0.1 153,925 + -0.7 153,925 + -0.9 153,925 + +0.9 153,926 - -0.3 153,937 - -0.2 153,949 + +0.3 153,950 - -0.1 153,950 - +0.3 153,950 - +0.1 153,950 - +0.2 153,960 - -0.7 153,960 - -0.5 153,960 - -0.6 153,960 - -1.0 153,993 + -1.7 154,026 - +0.9 154,041 + +0.5 154,041 + +0.3 154,041 + +0.5 154,041 + -1.2 154,042 - -1.0 154,042 - -1.6 154,042 - +1.8 154,065 + -0.5 154,065 + +2.3 154,065 + -0.7 154,065 + +0.8 154,065 + -2.6 154,065 + +0.1 154,065 + +0.9 154,066 - -0.5 154,066 - +0.9 154,084 + -1.4 154,084 + -1.9 154,084 + -1.3 154,084 + +0.9 154,084 + +1.2 154,085 - -1.1 154,085 - +1.1 154,085 - -0.2 154,085 - -0.5 154,085 - -0.5 154,085 - +1.0 154,089 + -0.9 154,147 + HER17_RS00670 0.19 +0.7 154,189 + HER17_RS00670 0.27 -0.9 154,189 + HER17_RS00670 0.27 -0.7 154,189 + HER17_RS00670 0.27 +1.0 154,190 - HER17_RS00670 0.27 +0.1 154,190 - HER17_RS00670 0.27 +0.5 154,190 - HER17_RS00670 0.27 -1.1 154,190 - HER17_RS00670 0.27 -0.7 154,190 - HER17_RS00670 0.27 -0.2 154,190 - HER17_RS00670 0.27 -0.5 154,190 - HER17_RS00670 0.27 -1.2
Or see this region's nucleotide sequence