Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00635 and HER17_RS00640 are separated by 13 nucleotides HER17_RS00640 and HER17_RS00645 are separated by 310 nucleotides HER17_RS00645 and HER17_RS00650 are separated by 10 nucleotides HER17_RS00650 and HER17_RS00655 overlap by 31 nucleotides
HER17_RS00635: HER17_RS00635 - AEC family transporter, at 146,638 to 147,594
_RS00635
HER17_RS00640: HER17_RS00640 - hypothetical protein, at 147,608 to 147,904
_RS00640
HER17_RS00645: HER17_RS00645 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 148,215 to 148,679
_RS00645
HER17_RS00650: HER17_RS00650 - DUF3142 domain-containing protein, at 148,690 to 149,490
_RS00650
HER17_RS00655: HER17_RS00655 - hypothetical protein, at 149,460 to 151,634
_RS00655
Position (kb) 148
149 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 147.351 kb on + strand, within HER17_RS00635 at 147.351 kb on + strand, within HER17_RS00635 at 147.369 kb on - strand, within HER17_RS00635 at 147.472 kb on + strand, within HER17_RS00635 at 147.473 kb on - strand, within HER17_RS00635 at 147.473 kb on - strand, within HER17_RS00635 at 147.473 kb on - strand, within HER17_RS00635 at 147.591 kb on - strand at 147.592 kb on + strand at 147.592 kb on + strand at 147.593 kb on - strand at 147.622 kb on + strand at 147.622 kb on + strand at 147.622 kb on + strand at 147.623 kb on - strand at 147.623 kb on - strand at 147.671 kb on + strand, within HER17_RS00640 at 147.672 kb on - strand, within HER17_RS00640 at 147.672 kb on - strand, within HER17_RS00640 at 147.725 kb on - strand, within HER17_RS00640 at 147.725 kb on - strand, within HER17_RS00640 at 147.763 kb on + strand, within HER17_RS00640 at 147.764 kb on - strand, within HER17_RS00640 at 147.877 kb on - strand at 147.877 kb on - strand at 147.885 kb on - strand at 147.892 kb on + strand at 147.892 kb on + strand at 147.893 kb on - strand at 147.906 kb on - strand at 147.906 kb on - strand at 147.937 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 148.026 kb on + strand at 148.026 kb on + strand at 148.048 kb on + strand at 148.092 kb on + strand at 148.123 kb on + strand at 148.175 kb on - strand at 148.176 kb on + strand at 148.176 kb on + strand at 148.176 kb on + strand at 148.176 kb on + strand at 148.177 kb on - strand at 148.210 kb on - strand at 148.233 kb on + strand at 148.233 kb on + strand at 148.234 kb on - strand at 148.234 kb on - strand at 148.234 kb on - strand at 148.266 kb on - strand, within HER17_RS00645 at 148.266 kb on - strand, within HER17_RS00645 at 148.266 kb on - strand, within HER17_RS00645 at 148.266 kb on - strand, within HER17_RS00645 at 148.268 kb on + strand, within HER17_RS00645 at 148.295 kb on + strand, within HER17_RS00645 at 148.295 kb on + strand, within HER17_RS00645 at 148.365 kb on + strand, within HER17_RS00645 at 148.394 kb on + strand, within HER17_RS00645 at 148.395 kb on - strand, within HER17_RS00645 at 148.448 kb on + strand, within HER17_RS00645 at 148.485 kb on + strand, within HER17_RS00645 at 148.485 kb on + strand, within HER17_RS00645 at 148.486 kb on - strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.543 kb on + strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.547 kb on + strand, within HER17_RS00645 at 148.547 kb on + strand, within HER17_RS00645 at 148.595 kb on + strand, within HER17_RS00645 at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.677 kb on + strand at 148.677 kb on + strand at 148.678 kb on - strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.691 kb on + strand at 148.691 kb on + strand at 148.757 kb on + strand at 148.757 kb on + strand at 148.758 kb on - strand at 148.758 kb on - strand at 148.813 kb on + strand, within HER17_RS00650 at 148.859 kb on + strand, within HER17_RS00650 at 148.859 kb on + strand, within HER17_RS00650 at 148.860 kb on - strand, within HER17_RS00650 at 148.868 kb on + strand, within HER17_RS00650 at 148.878 kb on + strand, within HER17_RS00650 at 148.878 kb on + strand, within HER17_RS00650 at 148.879 kb on - strand, within HER17_RS00650 at 148.879 kb on - strand, within HER17_RS00650 at 148.895 kb on + strand, within HER17_RS00650 at 148.984 kb on - strand, within HER17_RS00650 at 148.986 kb on + strand, within HER17_RS00650 at 148.987 kb on - strand, within HER17_RS00650 at 148.987 kb on - strand, within HER17_RS00650 at 149.020 kb on + strand, within HER17_RS00650 at 149.042 kb on + strand, within HER17_RS00650 at 149.042 kb on + strand, within HER17_RS00650 at 149.042 kb on + strand, within HER17_RS00650 at 149.043 kb on - strand, within HER17_RS00650 at 149.131 kb on + strand, within HER17_RS00650 at 149.131 kb on + strand, within HER17_RS00650 at 149.132 kb on - strand, within HER17_RS00650 at 149.132 kb on - strand, within HER17_RS00650 at 149.132 kb on - strand, within HER17_RS00650 at 149.239 kb on + strand, within HER17_RS00650 at 149.247 kb on + strand, within HER17_RS00650 at 149.282 kb on + strand, within HER17_RS00650 at 149.283 kb on - strand, within HER17_RS00650 at 149.421 kb on + strand at 149.468 kb on - strand at 149.470 kb on + strand at 149.504 kb on - strand at 149.590 kb on + strand at 149.591 kb on - strand at 149.609 kb on - strand at 149.618 kb on - strand at 149.618 kb on - strand at 149.618 kb on - strand at 149.665 kb on + strand at 149.665 kb on + strand at 149.665 kb on + strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.666 kb on - strand at 149.666 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 147,351 + HER17_RS00635 0.75 +0.1 147,351 + HER17_RS00635 0.75 +0.2 147,369 - HER17_RS00635 0.76 +1.7 147,472 + HER17_RS00635 0.87 -0.2 147,473 - HER17_RS00635 0.87 +0.1 147,473 - HER17_RS00635 0.87 +0.6 147,473 - HER17_RS00635 0.87 +1.1 147,591 - +0.6 147,592 + +0.7 147,592 + -0.5 147,593 - +0.2 147,622 + -0.2 147,622 + +0.3 147,622 + +0.2 147,623 - -0.6 147,623 - +0.3 147,671 + HER17_RS00640 0.21 +1.3 147,672 - HER17_RS00640 0.22 -0.5 147,672 - HER17_RS00640 0.22 +0.7 147,725 - HER17_RS00640 0.39 -1.0 147,725 - HER17_RS00640 0.39 +0.1 147,763 + HER17_RS00640 0.52 +0.2 147,764 - HER17_RS00640 0.53 -0.0 147,877 - -0.0 147,877 - -0.5 147,885 - -1.5 147,892 + -0.3 147,892 + -0.9 147,893 - +1.9 147,906 - +0.8 147,906 - -0.2 147,937 - +0.9 147,973 - -0.6 147,973 - -0.4 147,973 - +0.3 147,973 - +0.5 148,026 + +0.6 148,026 + +1.5 148,048 + +0.6 148,092 + -0.2 148,123 + -0.5 148,175 - +0.6 148,176 + -0.9 148,176 + -0.8 148,176 + -0.2 148,176 + +0.9 148,177 - -0.5 148,210 - -1.9 148,233 + -0.3 148,233 + +0.3 148,234 - -1.8 148,234 - +0.6 148,234 - -0.1 148,266 - HER17_RS00645 0.11 +0.3 148,266 - HER17_RS00645 0.11 -0.2 148,266 - HER17_RS00645 0.11 +1.9 148,266 - HER17_RS00645 0.11 -0.9 148,268 + HER17_RS00645 0.11 -0.1 148,295 + HER17_RS00645 0.17 +0.3 148,295 + HER17_RS00645 0.17 -0.4 148,365 + HER17_RS00645 0.32 -1.4 148,394 + HER17_RS00645 0.38 -0.5 148,395 - HER17_RS00645 0.39 +0.6 148,448 + HER17_RS00645 0.50 +1.0 148,485 + HER17_RS00645 0.58 +1.0 148,485 + HER17_RS00645 0.58 +0.2 148,486 - HER17_RS00645 0.58 -0.7 148,501 + HER17_RS00645 0.62 -2.1 148,501 + HER17_RS00645 0.62 +0.6 148,501 + HER17_RS00645 0.62 +0.5 148,501 + HER17_RS00645 0.62 +0.5 148,501 + HER17_RS00645 0.62 -1.0 148,501 + HER17_RS00645 0.62 +2.1 148,501 + HER17_RS00645 0.62 +0.4 148,501 + HER17_RS00645 0.62 +0.2 148,501 + HER17_RS00645 0.62 -0.4 148,501 + HER17_RS00645 0.62 -0.4 148,501 + HER17_RS00645 0.62 +0.5 148,501 + HER17_RS00645 0.62 -0.0 148,501 + HER17_RS00645 0.62 +1.5 148,501 + HER17_RS00645 0.62 +0.9 148,501 + HER17_RS00645 0.62 +0.6 148,502 - HER17_RS00645 0.62 -1.5 148,502 - HER17_RS00645 0.62 -0.5 148,502 - HER17_RS00645 0.62 +2.1 148,502 - HER17_RS00645 0.62 +0.1 148,502 - HER17_RS00645 0.62 -0.1 148,502 - HER17_RS00645 0.62 +0.2 148,502 - HER17_RS00645 0.62 -0.4 148,502 - HER17_RS00645 0.62 -0.4 148,502 - HER17_RS00645 0.62 +0.9 148,502 - HER17_RS00645 0.62 -0.4 148,543 + HER17_RS00645 0.71 -0.0 148,544 - HER17_RS00645 0.71 -0.1 148,544 - HER17_RS00645 0.71 +0.9 148,544 - HER17_RS00645 0.71 -0.9 148,544 - HER17_RS00645 0.71 +0.3 148,544 - HER17_RS00645 0.71 -0.7 148,547 + HER17_RS00645 0.71 -0.1 148,547 + HER17_RS00645 0.71 +0.2 148,595 + HER17_RS00645 0.82 -0.2 148,634 + +0.9 148,634 + +0.1 148,634 + -0.4 148,634 + -0.1 148,634 + +2.2 148,634 + -0.8 148,634 + +1.0 148,634 + -1.3 148,634 + -0.2 148,634 + +0.1 148,634 + +0.2 148,635 - -0.3 148,635 - -0.5 148,635 - +0.2 148,635 - +2.0 148,635 - -0.2 148,635 - -1.1 148,635 - -1.2 148,635 - +0.9 148,638 + -0.1 148,638 + -1.2 148,638 + +0.6 148,638 + -0.7 148,638 + +0.4 148,638 + +1.0 148,638 + -1.4 148,639 - -1.2 148,639 - -0.5 148,639 - -0.5 148,639 - +0.2 148,677 + -0.6 148,677 + -1.2 148,678 - +0.8 148,681 + +1.8 148,681 + +1.1 148,681 + -0.3 148,681 + -0.7 148,681 + +0.5 148,681 + +0.3 148,682 - -0.1 148,682 - -0.6 148,682 - -0.7 148,682 - -1.3 148,682 - +1.0 148,682 - +0.7 148,691 + +0.5 148,691 + -0.9 148,757 + +0.8 148,757 + +1.5 148,758 - -0.0 148,758 - +1.5 148,813 + HER17_RS00650 0.15 -0.1 148,859 + HER17_RS00650 0.21 +0.4 148,859 + HER17_RS00650 0.21 +0.5 148,860 - HER17_RS00650 0.21 +1.1 148,868 + HER17_RS00650 0.22 -0.3 148,878 + HER17_RS00650 0.23 -1.1 148,878 + HER17_RS00650 0.23 -0.5 148,879 - HER17_RS00650 0.24 -0.6 148,879 - HER17_RS00650 0.24 -0.5 148,895 + HER17_RS00650 0.26 +1.1 148,984 - HER17_RS00650 0.37 +0.9 148,986 + HER17_RS00650 0.37 +1.2 148,987 - HER17_RS00650 0.37 -0.2 148,987 - HER17_RS00650 0.37 +1.1 149,020 + HER17_RS00650 0.41 -0.6 149,042 + HER17_RS00650 0.44 -1.5 149,042 + HER17_RS00650 0.44 -0.0 149,042 + HER17_RS00650 0.44 -0.7 149,043 - HER17_RS00650 0.44 +0.1 149,131 + HER17_RS00650 0.55 +0.7 149,131 + HER17_RS00650 0.55 +1.3 149,132 - HER17_RS00650 0.55 -0.3 149,132 - HER17_RS00650 0.55 +0.2 149,132 - HER17_RS00650 0.55 +1.0 149,239 + HER17_RS00650 0.69 -0.1 149,247 + HER17_RS00650 0.70 -0.5 149,282 + HER17_RS00650 0.74 -0.5 149,283 - HER17_RS00650 0.74 -0.2 149,421 + -0.1 149,468 - -0.6 149,470 + -0.7 149,504 - +0.5 149,590 + -0.1 149,591 - +0.9 149,609 - -0.3 149,618 - -1.2 149,618 - +0.3 149,618 - +0.3 149,665 + -0.2 149,665 + +0.5 149,665 + +1.2 149,666 - +0.1 149,666 - -0.4 149,666 - -2.1 149,666 - +3.4 149,666 - +0.3
Or see this region's nucleotide sequence