Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20685

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,637,696	+		HER17_RS20680	0.72	+3.1
4,637,697	-		HER17_RS20680	0.72	+1.6
4,637,761	+		HER17_RS20680	0.76	-1.9
4,637,761	+		HER17_RS20680	0.76	-1.3
4,637,761	+		HER17_RS20680	0.76	+1.5
4,637,761	+		HER17_RS20680	0.76	-1.6
4,637,762	-		HER17_RS20680	0.76	+0.1
4,637,873	-		HER17_RS20680	0.82	+2.2
4,637,873	-		HER17_RS20680	0.82	+0.6
4,637,894	-		HER17_RS20680	0.84	+0.2
4,637,908	-		HER17_RS20680	0.85	+0.5
4,637,908	-		HER17_RS20680	0.85	-0.4
4,637,948	+		HER17_RS20680	0.87	+0.6
4,637,952	+		HER17_RS20680	0.87	+0.2
4,637,992	+		HER17_RS20680	0.90	+6.1
4,637,992	+		HER17_RS20680	0.90	-0.9
4,638,000	-				+0.6
4,638,028	+				+0.0
4,638,178	+				+0.4
4,638,178	+				+1.4
4,638,179	-				-1.2
4,638,182	+				-1.0
4,638,182	+				-0.9
4,638,182	+				-1.1
4,638,182	+				-1.4
4,638,183	-				-1.7
4,638,185	+				+2.2
4,638,192	+				-0.2
4,638,206	-				+0.4
4,638,259	+				-1.7
4,638,277	+				+1.1
4,638,281	+				-2.3
4,638,282	-				-1.6
4,638,320	+				-0.9
4,638,320	+				+2.3
4,638,324	+				-0.9
4,638,325	-				-0.1
4,638,356	+				-0.8
4,638,356	+				-0.1
4,638,357	-				-0.9
4,638,389	+				-0.0
4,638,389	+				+0.4
4,638,390	-				-0.8
4,638,390	-				-1.2
4,638,390	-				+3.1
4,638,406	-				-0.7
4,638,412	+				-1.9
4,638,412	+				-1.4
4,638,490	-				-0.2
4,638,554	+				+1.1
4,638,555	-				-0.8
4,638,556	+				+0.2
4,638,556	+				+1.4
4,638,556	+				-0.3
4,638,556	+				-0.6
4,638,556	+				-0.7
4,638,557	-				-2.4
4,638,597	+				-1.9
4,638,631	+				+0.1
4,638,632	-				+0.3
4,638,632	-				+2.2
4,638,632	-				-1.1
4,638,632	-				+0.4
4,638,636	+				+2.2
4,638,642	+				+0.7
4,638,643	-				+2.1
4,638,689	+				-1.2
4,638,690	-				-0.2
4,638,693	+				+2.2
4,638,693	+				-0.6
4,638,693	+				-0.7
4,638,693	+				+0.6
4,638,694	-				+0.9
4,638,694	-				-1.0
4,638,733	+				-2.0
4,638,818	-				-0.6
4,638,888	+				+0.4
4,638,973	+		HER17_RS20685	0.12	-1.6
4,638,974	-		HER17_RS20685	0.12	-0.2
4,639,055	-		HER17_RS20685	0.16	+0.5
4,639,110	+		HER17_RS20685	0.18	+1.4
4,639,111	-		HER17_RS20685	0.18	+0.3
4,639,111	-		HER17_RS20685	0.18	-0.2
4,639,111	-		HER17_RS20685	0.18	+1.3
4,639,111	-		HER17_RS20685	0.18	-1.2
4,639,177	+		HER17_RS20685	0.21	-1.9
4,639,238	-		HER17_RS20685	0.24	+0.3
4,639,344	+		HER17_RS20685	0.29	+1.7
4,639,345	-		HER17_RS20685	0.29	-1.3
4,639,345	-		HER17_RS20685	0.29	-0.6
4,639,425	+		HER17_RS20685	0.32	-0.9
4,639,426	-		HER17_RS20685	0.32	+0.4
4,639,426	-		HER17_RS20685	0.32	-1.2
4,639,426	-		HER17_RS20685	0.32	-0.0
4,639,483	-		HER17_RS20685	0.35	+2.0
4,639,523	+		HER17_RS20685	0.37	-1.0
4,639,524	-		HER17_RS20685	0.37	+2.1
4,639,524	-		HER17_RS20685	0.37	+0.7
4,639,524	-		HER17_RS20685	0.37	-0.2
4,639,594	+		HER17_RS20685	0.40	-0.7
4,639,594	+		HER17_RS20685	0.40	+1.0
4,639,594	+		HER17_RS20685	0.40	+0.9
4,639,595	-		HER17_RS20685	0.40	+2.0
4,639,595	-		HER17_RS20685	0.40	+0.0
4,639,766	-		HER17_RS20685	0.47	+0.4
4,639,795	+		HER17_RS20685	0.49	-0.8
4,639,839	+		HER17_RS20685	0.51	-0.2
4,639,839	+		HER17_RS20685	0.51	+0.8
4,639,839	+		HER17_RS20685	0.51	+2.2
4,639,839	+		HER17_RS20685	0.51	-0.7
4,639,840	-		HER17_RS20685	0.51	-0.4
4,639,840	-		HER17_RS20685	0.51	+0.7
4,639,952	+		HER17_RS20685	0.55	+0.1
4,639,952	+		HER17_RS20685	0.55	-0.2
4,639,952	+		HER17_RS20685	0.55	+1.3
4,639,978	+		HER17_RS20685	0.57	+0.6
4,639,979	-		HER17_RS20685	0.57	+1.4
4,640,114	-		HER17_RS20685	0.63	-0.0
4,640,153	-		HER17_RS20685	0.64	+1.9
4,640,233	-		HER17_RS20685	0.68	+1.3
4,640,233	-		HER17_RS20685	0.68	+1.6
4,640,275	-		HER17_RS20685	0.70	-0.8
4,640,275	-		HER17_RS20685	0.70	+0.7
4,640,396	+		HER17_RS20685	0.75	-0.4
4,640,397	-		HER17_RS20685	0.75	+0.3
4,640,460	+		HER17_RS20685	0.78	-0.9
4,640,460	+		HER17_RS20685	0.78	-0.9
4,640,461	-		HER17_RS20685	0.78	-0.8
4,640,461	-		HER17_RS20685	0.78	-0.2
4,640,461	-		HER17_RS20685	0.78	+0.6
4,640,474	+		HER17_RS20685	0.79	-0.2
4,640,495	-		HER17_RS20685	0.79	+0.5
4,640,584	+		HER17_RS20685	0.83	-0.2
4,640,584	+		HER17_RS20685	0.83	-0.2
4,640,584	+		HER17_RS20685	0.83	-0.2
4,640,584	+		HER17_RS20685	0.83	+0.5
4,640,584	+		HER17_RS20685	0.83	-0.1
4,640,584	+		HER17_RS20685	0.83	-0.7
4,640,584	+		HER17_RS20685	0.83	+1.5
4,640,584	+		HER17_RS20685	0.83	-0.6
4,640,585	-		HER17_RS20685	0.83	+0.0
4,640,585	-		HER17_RS20685	0.83	+0.0
4,640,585	-		HER17_RS20685	0.83	+0.0
4,640,585	-		HER17_RS20685	0.83	-0.9
4,640,585	-		HER17_RS20685	0.83	+0.4
4,640,585	-		HER17_RS20685	0.83	-0.9
4,640,585	-		HER17_RS20685	0.83	-2.2
4,640,586	+		HER17_RS20685	0.83	-2.0
4,640,586	+		HER17_RS20685	0.83	-0.2
4,640,586	+		HER17_RS20685	0.83	+0.9
4,640,587	-		HER17_RS20685	0.84	-0.8
4,640,587	-		HER17_RS20685	0.84	-1.9
4,640,587	-		HER17_RS20685	0.84	-0.9
4,640,587	-		HER17_RS20685	0.84	+2.1
4,640,587	-		HER17_RS20685	0.84	-0.6
4,640,587	-		HER17_RS20685	0.84	+0.7
4,640,592	+		HER17_RS20685	0.84	+0.6
4,640,592	+		HER17_RS20685	0.84	+1.4
4,640,592	+		HER17_RS20685	0.84	-0.2
4,640,593	-		HER17_RS20685	0.84	+0.7
4,640,593	-		HER17_RS20685	0.84	+2.7
4,640,593	-		HER17_RS20685	0.84	-1.5
4,640,593	-		HER17_RS20685	0.84	+0.0
4,640,593	-		HER17_RS20685	0.84	+1.1
4,640,593	-		HER17_RS20685	0.84	+0.8
4,640,761	-				-0.7
4,640,761	-				-0.2
4,640,941	+				-1.2
4,640,941	+				-0.8
4,640,941	+				-1.0
4,640,941	+				+1.2
4,640,941	+				+0.8
4,640,941	+				-0.9
4,640,941	+				+1.3
4,640,942	-				+0.3
4,640,942	-				+0.8
4,640,942	-				+0.7
4,640,942	-				+0.3
4,640,942	-				-0.2
4,640,942	-				+2.9
4,640,942	-				+0.3
4,640,942	-				-2.5
4,640,942	-				-1.4
4,640,942	-				+0.7
4,641,013	-				+1.1
4,641,017	+				-0.2
4,641,017	+				+2.0
4,641,018	-				-1.2
4,641,018	-				-0.4
4,641,018	-				-0.8
4,641,018	-				-1.0
4,641,021	-				-0.7
4,641,021	-				-0.3
4,641,038	-				+0.8
4,641,076	-				-0.3
4,641,076	-				+1.0
4,641,206	+		HER17_RS20690	0.15	+0.4
4,641,216	+		HER17_RS20690	0.16	-1.0
4,641,216	+		HER17_RS20690	0.16	+2.4
4,641,237	+		HER17_RS20690	0.18	+1.2
4,641,357	+		HER17_RS20690	0.31	+0.8
4,641,357	+		HER17_RS20690	0.31	-1.0
4,641,357	+		HER17_RS20690	0.31	-0.9
4,641,357	+		HER17_RS20690	0.31	-1.4
4,641,358	-		HER17_RS20690	0.31	-0.2
4,641,358	-		HER17_RS20690	0.31	+2.5
4,641,358	-		HER17_RS20690	0.31	-0.9
4,641,358	-		HER17_RS20690	0.31	+1.0
4,641,363	+		HER17_RS20690	0.32	+0.1
4,641,363	+		HER17_RS20690	0.32	-0.6
4,641,363	+		HER17_RS20690	0.32	+0.4
4,641,364	-		HER17_RS20690	0.32	-0.0
4,641,429	+		HER17_RS20690	0.39	+0.2
4,641,527	-		HER17_RS20690	0.49	-1.2
4,641,681	-		HER17_RS20690	0.66	-0.2
4,641,702	+		HER17_RS20690	0.68	+5.0
4,641,702	+		HER17_RS20690	0.68	-0.7
4,641,723	+		HER17_RS20690	0.70	-1.4
4,641,723	+		HER17_RS20690	0.70	+0.0
4,641,724	-		HER17_RS20690	0.71	+0.1
4,641,724	-		HER17_RS20690	0.71	-0.2
4,641,857	-		HER17_RS20690	0.85	-1.7
4,641,941	+				+1.7
4,641,942	-				-0.6
4,641,942	-				-0.4