Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20175

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,526,879	+				-0.6
4,526,952	+				-1.4
4,526,952	+				-0.9
4,526,952	+				-0.9
4,526,952	+				-0.7
4,526,953	-				+1.1
4,526,953	-				+1.2
4,526,953	-				+0.8
4,526,953	-				+0.8
4,526,992	+				-2.0
4,526,993	-				+0.8
4,527,026	+				-0.2
4,527,026	+				-0.9
4,527,026	+				-1.9
4,527,026	+				-2.1
4,527,026	+				+0.4
4,527,026	+				+0.4
4,527,026	+				+3.1
4,527,027	-				-0.4
4,527,027	-				+0.6
4,527,027	-				+0.3
4,527,063	+				-0.3
4,527,063	+				-0.2
4,527,063	+				-1.7
4,527,063	+				+0.2
4,527,063	+				+1.8
4,527,064	-				+0.4
4,527,064	-				-0.2
4,527,064	-				+1.1
4,527,064	-				-0.7
4,527,064	-				+0.3
4,527,086	+				+0.8
4,527,087	-				+0.2
4,527,087	-				+0.9
4,527,087	-				-0.2
4,527,088	+				-1.8
4,527,091	+				-0.7
4,527,091	+				-2.2
4,527,092	-				-0.0
4,527,092	-				-0.2
4,527,132	+				+0.2
4,527,133	-				-0.2
4,527,172	+				-0.4
4,527,172	+				-0.9
4,527,173	-				-0.4
4,527,173	-				-1.2
4,527,173	-				+0.9
4,527,231	+				+0.9
4,527,273	+				-1.0
4,527,361	+		HER17_RS20175	0.14	-0.6
4,527,361	+		HER17_RS20175	0.14	-1.2
4,527,361	+		HER17_RS20175	0.14	-0.6
4,527,361	+		HER17_RS20175	0.14	+4.3
4,527,361	+		HER17_RS20175	0.14	-1.4
4,527,362	-		HER17_RS20175	0.14	-0.6
4,527,362	-		HER17_RS20175	0.14	-1.3
4,527,362	-		HER17_RS20175	0.14	-1.4
4,527,414	+		HER17_RS20175	0.17	+0.5
4,527,456	-		HER17_RS20175	0.19	-0.8
4,527,456	-		HER17_RS20175	0.19	+4.6
4,527,457	+		HER17_RS20175	0.19	+0.7
4,527,457	+		HER17_RS20175	0.19	-0.4
4,527,457	+		HER17_RS20175	0.19	-3.2
4,527,457	+		HER17_RS20175	0.19	+1.0
4,527,457	+		HER17_RS20175	0.19	+0.5
4,527,457	+		HER17_RS20175	0.19	+0.2
4,527,457	+		HER17_RS20175	0.19	+0.4
4,527,457	+		HER17_RS20175	0.19	+0.5
4,527,458	-		HER17_RS20175	0.19	+0.2
4,527,458	-		HER17_RS20175	0.19	+0.3
4,527,458	-		HER17_RS20175	0.19	-0.2
4,527,525	+		HER17_RS20175	0.22	-0.5
4,527,652	+		HER17_RS20175	0.29	-0.1
4,527,652	+		HER17_RS20175	0.29	+0.1
4,527,653	-		HER17_RS20175	0.29	+1.8
4,527,653	-		HER17_RS20175	0.29	+0.4
4,527,653	-		HER17_RS20175	0.29	-1.0
4,527,689	+		HER17_RS20175	0.31	-1.9
4,527,690	-		HER17_RS20175	0.31	-0.5
4,527,690	-		HER17_RS20175	0.31	-2.4
4,527,691	+		HER17_RS20175	0.31	-0.3
4,527,691	+		HER17_RS20175	0.31	-0.7
4,527,691	+		HER17_RS20175	0.31	+0.9
4,527,691	+		HER17_RS20175	0.31	-1.4
4,527,692	-		HER17_RS20175	0.31	-1.5
4,527,692	-		HER17_RS20175	0.31	-0.4
4,527,692	-		HER17_RS20175	0.31	+0.1
4,527,692	-		HER17_RS20175	0.31	-0.2
4,527,692	-		HER17_RS20175	0.31	+1.3
4,527,724	+		HER17_RS20175	0.33	-1.4
4,527,728	+		HER17_RS20175	0.33	-2.1
4,527,753	+		HER17_RS20175	0.34	-0.2
4,527,753	+		HER17_RS20175	0.34	-0.2
4,527,753	+		HER17_RS20175	0.34	-1.3
4,527,753	+		HER17_RS20175	0.34	+0.7
4,527,754	-		HER17_RS20175	0.34	-0.2
4,527,754	-		HER17_RS20175	0.34	-0.2
4,527,879	+		HER17_RS20175	0.41	-2.1
4,527,879	+		HER17_RS20175	0.41	+4.6
4,527,880	-		HER17_RS20175	0.41	-1.9
4,527,880	-		HER17_RS20175	0.41	-1.2
4,527,980	+		HER17_RS20175	0.46	-1.1
4,527,981	-		HER17_RS20175	0.46	-0.2
4,527,981	-		HER17_RS20175	0.46	+0.4
4,528,096	-		HER17_RS20175	0.52	-0.6
4,528,096	-		HER17_RS20175	0.52	+0.8
4,528,096	-		HER17_RS20175	0.52	-2.2
4,528,098	+		HER17_RS20175	0.52	-0.8
4,528,098	+		HER17_RS20175	0.52	+0.3
4,528,099	-		HER17_RS20175	0.52	-1.1
4,528,335	-		HER17_RS20175	0.64	-1.3
4,528,377	+		HER17_RS20175	0.66	+0.6
4,528,377	+		HER17_RS20175	0.66	+0.1
4,528,378	-		HER17_RS20175	0.66	-0.2
4,528,378	-		HER17_RS20175	0.66	+0.1
4,528,378	-		HER17_RS20175	0.66	+1.2
4,528,382	+		HER17_RS20175	0.67	+0.4
4,528,454	+		HER17_RS20175	0.70	-2.1
4,528,454	+		HER17_RS20175	0.70	-0.3
4,528,454	+		HER17_RS20175	0.70	-1.9
4,528,455	-		HER17_RS20175	0.70	-1.5
4,528,455	-		HER17_RS20175	0.70	-1.5
4,528,579	+		HER17_RS20175	0.77	+2.9
4,528,579	+		HER17_RS20175	0.77	-0.7
4,528,666	+		HER17_RS20175	0.81	-0.6
4,528,667	-		HER17_RS20175	0.81	-2.3
4,528,667	-		HER17_RS20175	0.81	+0.4
4,528,672	-		HER17_RS20175	0.82	-1.6
4,528,761	+		HER17_RS20175	0.86	-0.4
4,528,762	-		HER17_RS20175	0.86	+2.1
4,528,769	-		HER17_RS20175	0.87	+1.4
4,528,840	+				-0.6
4,528,866	+				-0.4
4,528,902	+				-1.2
4,528,903	-				-0.6
4,528,928	+				-1.8
4,528,928	+				+0.7
4,528,928	+				-0.7
4,528,931	-				-1.9
4,528,947	+				-1.6
4,528,953	-				-0.1
4,528,993	-				+0.2
4,528,996	-				+1.4
4,529,018	+				-1.6
4,529,099	+				-0.9
4,529,099	+				-0.7
4,529,099	+				+0.6
4,529,099	+				+0.2
4,529,100	-				-0.3
4,529,100	-				-0.4
4,529,100	-				+1.0
4,529,100	-				+0.5
4,529,100	-				+0.0
4,529,103	+				-1.0
4,529,103	+				+0.4
4,529,103	+				-0.3
4,529,103	+				-0.8
4,529,103	+				-1.8
4,529,103	+				+0.9
4,529,104	-				-0.3
4,529,104	-				+0.3
4,529,104	-				-0.1
4,529,104	-				-0.1
4,529,104	-				+1.7
4,529,104	-				-0.1
4,529,106	+				+2.3
4,529,106	+				-0.1
4,529,107	-				+0.0
4,529,124	+				+0.2
4,529,124	+				+0.4
4,529,138	+				+1.6
4,529,138	+				-0.8
4,529,138	+				-0.0
4,529,139	-				+0.4
4,529,139	-				-1.4
4,529,142	-				+0.8
4,529,142	-				-1.0
4,529,142	-				-1.4
4,529,147	+				+0.2
4,529,147	+				-1.8
4,529,148	-				+0.6
4,529,148	-				-0.4
4,529,150	+				+2.5
4,529,150	+				-0.2
4,529,151	-				+0.4
4,529,151	-				+0.2
4,529,151	-				-1.1
4,529,154	+				-1.2
4,529,154	+				-0.6
4,529,154	+				+1.7
4,529,154	+				+1.8
4,529,155	-				-0.2
4,529,155	-				-1.3
4,529,155	-				+1.3
4,529,155	-				-0.2
4,529,155	-				-0.7
4,529,155	-				+2.6
4,529,155	-				-0.2
4,529,155	-				-1.8
4,529,155	-				-0.7
4,529,156	+				-0.2
4,529,177	+				-0.2
4,529,178	-				+0.6
4,529,181	+				+0.4
4,529,182	-				+3.0
4,529,199	+				-0.9
4,529,199	+				+0.8
4,529,200	-				-0.4
4,529,200	-				+0.2
4,529,215	+				-0.1
4,529,215	+				-0.6
4,529,293	+				-0.2
4,529,293	+				-0.6
4,529,293	+				-0.6
4,529,293	+				-1.1
4,529,293	+				-2.4
4,529,293	+				+1.2
4,529,293	+				-2.8
4,529,294	-				-1.6
4,529,294	-				-0.9
4,529,294	-				-0.3
4,529,294	-				-0.4
4,529,294	-				+0.3
4,529,294	-				-1.1
4,529,303	+		HER17_RS20180	0.10	-1.1
4,529,321	+		HER17_RS20180	0.12	+0.4
4,529,321	+		HER17_RS20180	0.12	+2.0
4,529,322	-		HER17_RS20180	0.12	-0.6
4,529,322	-		HER17_RS20180	0.12	+0.5
4,529,322	-		HER17_RS20180	0.12	+3.0
4,529,322	-		HER17_RS20180	0.12	-0.2
4,529,326	-		HER17_RS20180	0.12	-1.4
4,529,326	-		HER17_RS20180	0.12	-0.5
4,529,326	-		HER17_RS20180	0.12	+1.7
4,529,326	-		HER17_RS20180	0.12	-2.3
4,529,327	+		HER17_RS20180	0.12	-0.6
4,529,327	+		HER17_RS20180	0.12	-2.9
4,529,328	-		HER17_RS20180	0.13	-0.3
4,529,328	-		HER17_RS20180	0.13	-0.6
4,529,568	-		HER17_RS20180	0.37	-0.6
4,529,713	+		HER17_RS20180	0.52	+1.8
4,529,713	+		HER17_RS20180	0.52	-1.6
4,529,713	+		HER17_RS20180	0.52	-1.1
4,529,714	-		HER17_RS20180	0.52	+2.4
4,529,714	-		HER17_RS20180	0.52	+0.7
4,529,714	-		HER17_RS20180	0.52	+0.8
4,529,718	+		HER17_RS20180	0.52	-1.0
4,529,718	+		HER17_RS20180	0.52	-1.0
4,529,760	+		HER17_RS20180	0.57	-1.2
4,529,904	+		HER17_RS20180	0.71	+1.4
4,529,905	-		HER17_RS20180	0.72	-0.9
4,529,905	-		HER17_RS20180	0.72	+1.0
4,529,972	+		HER17_RS20180	0.78	+2.1
4,529,972	+		HER17_RS20180	0.78	+0.4
4,529,973	-		HER17_RS20180	0.79	-1.2
4,529,978	-		HER17_RS20180	0.79	-0.2
4,529,982	-		HER17_RS20180	0.79	+0.1
4,529,982	-		HER17_RS20180	0.79	-2.1