Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS19925 and HER17_RS19930 are separated by 62 nucleotides HER17_RS19930 and HER17_RS19935 are separated by 5 nucleotides HER17_RS19935 and HER17_RS19940 are separated by 418 nucleotides
HER17_RS19925: HER17_RS19925 - (S)-acetoin forming diacetyl reductase, at 4,477,911 to 4,478,684
_RS19925
HER17_RS19930: HER17_RS19930 - ClpXP protease specificity-enhancing factor, at 4,478,747 to 4,479,250
_RS19930
HER17_RS19935: HER17_RS19935 - stringent starvation protein A, at 4,479,256 to 4,479,897
_RS19935
HER17_RS19940: HER17_RS19940 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 4,480,316 to 4,481,560
_RS19940
Position (kb) 4479
4480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4478.368 kb on - strand, within HER17_RS19925 at 4478.422 kb on + strand, within HER17_RS19925 at 4478.452 kb on - strand, within HER17_RS19925 at 4478.467 kb on + strand, within HER17_RS19925 at 4478.610 kb on + strand at 4478.611 kb on - strand at 4478.634 kb on + strand at 4478.634 kb on + strand at 4478.634 kb on + strand at 4478.634 kb on + strand at 4478.634 kb on + strand at 4478.634 kb on + strand at 4478.635 kb on - strand at 4478.636 kb on + strand at 4478.636 kb on + strand at 4478.636 kb on + strand at 4478.637 kb on - strand at 4478.637 kb on - strand at 4478.637 kb on - strand at 4478.637 kb on - strand at 4478.637 kb on - strand at 4478.637 kb on - strand at 4478.682 kb on + strand at 4478.683 kb on - strand at 4478.738 kb on - strand at 4478.748 kb on + strand at 4478.782 kb on + strand at 4478.783 kb on - strand at 4478.783 kb on - strand at 4478.848 kb on + strand, within HER17_RS19930 at 4478.848 kb on + strand, within HER17_RS19930 at 4478.849 kb on - strand, within HER17_RS19930 at 4478.904 kb on + strand, within HER17_RS19930 at 4478.970 kb on + strand, within HER17_RS19930 at 4478.970 kb on + strand, within HER17_RS19930 at 4478.970 kb on + strand, within HER17_RS19930 at 4478.970 kb on + strand, within HER17_RS19930 at 4478.970 kb on + strand, within HER17_RS19930 at 4478.970 kb on + strand, within HER17_RS19930 at 4478.970 kb on + strand, within HER17_RS19930 at 4478.970 kb on + strand, within HER17_RS19930 at 4478.971 kb on - strand, within HER17_RS19930 at 4478.971 kb on - strand, within HER17_RS19930 at 4478.971 kb on - strand, within HER17_RS19930 at 4478.971 kb on - strand, within HER17_RS19930 at 4479.000 kb on + strand, within HER17_RS19930 at 4479.000 kb on + strand, within HER17_RS19930 at 4479.001 kb on - strand, within HER17_RS19930 at 4479.001 kb on - strand, within HER17_RS19930 at 4479.056 kb on + strand, within HER17_RS19930 at 4479.134 kb on - strand, within HER17_RS19930 at 4479.134 kb on - strand, within HER17_RS19930 at 4479.148 kb on + strand, within HER17_RS19930 at 4479.148 kb on + strand, within HER17_RS19930 at 4479.155 kb on + strand, within HER17_RS19930 at 4479.156 kb on - strand, within HER17_RS19930 at 4479.210 kb on - strand at 4479.212 kb on + strand at 4479.213 kb on - strand at 4479.216 kb on + strand at 4479.216 kb on + strand at 4479.342 kb on - strand, within HER17_RS19935 at 4479.419 kb on + strand, within HER17_RS19935 at 4479.419 kb on + strand, within HER17_RS19935 at 4479.456 kb on - strand, within HER17_RS19935 at 4479.472 kb on + strand, within HER17_RS19935 at 4479.473 kb on - strand, within HER17_RS19935 at 4479.511 kb on - strand, within HER17_RS19935 at 4479.582 kb on + strand, within HER17_RS19935 at 4479.582 kb on + strand, within HER17_RS19935 at 4479.582 kb on + strand, within HER17_RS19935 at 4479.583 kb on - strand, within HER17_RS19935 at 4479.666 kb on - strand, within HER17_RS19935 at 4479.666 kb on - strand, within HER17_RS19935 at 4479.689 kb on + strand, within HER17_RS19935 at 4479.690 kb on - strand, within HER17_RS19935 at 4479.690 kb on - strand, within HER17_RS19935 at 4479.747 kb on + strand, within HER17_RS19935 at 4479.748 kb on - strand, within HER17_RS19935 at 4479.748 kb on - strand, within HER17_RS19935 at 4479.765 kb on + strand, within HER17_RS19935 at 4479.766 kb on - strand, within HER17_RS19935 at 4479.775 kb on + strand, within HER17_RS19935 at 4479.814 kb on + strand, within HER17_RS19935 at 4479.815 kb on - strand, within HER17_RS19935 at 4479.815 kb on - strand, within HER17_RS19935 at 4479.815 kb on - strand, within HER17_RS19935 at 4479.934 kb on - strand at 4479.992 kb on - strand at 4480.037 kb on - strand at 4480.037 kb on - strand at 4480.037 kb on - strand at 4480.041 kb on + strand at 4480.041 kb on + strand at 4480.041 kb on + strand at 4480.042 kb on - strand at 4480.042 kb on - strand at 4480.042 kb on - strand at 4480.042 kb on - strand at 4480.053 kb on + strand at 4480.053 kb on + strand at 4480.054 kb on - strand at 4480.054 kb on - strand at 4480.066 kb on + strand at 4480.066 kb on + strand at 4480.066 kb on + strand at 4480.066 kb on + strand at 4480.066 kb on + strand at 4480.067 kb on - strand at 4480.067 kb on - strand at 4480.207 kb on + strand at 4480.207 kb on + strand at 4480.207 kb on + strand at 4480.207 kb on + strand at 4480.207 kb on + strand at 4480.208 kb on - strand at 4480.208 kb on - strand at 4480.208 kb on - strand at 4480.208 kb on - strand at 4480.217 kb on - strand at 4480.273 kb on - strand at 4480.273 kb on - strand at 4480.317 kb on + strand at 4480.317 kb on + strand at 4480.318 kb on - strand at 4480.318 kb on - strand at 4480.318 kb on - strand at 4480.433 kb on - strand at 4480.443 kb on + strand, within HER17_RS19940 at 4480.443 kb on + strand, within HER17_RS19940 at 4480.510 kb on + strand, within HER17_RS19940 at 4480.510 kb on + strand, within HER17_RS19940 at 4480.512 kb on + strand, within HER17_RS19940 at 4480.512 kb on + strand, within HER17_RS19940 at 4480.512 kb on + strand, within HER17_RS19940 at 4480.522 kb on + strand, within HER17_RS19940 at 4480.534 kb on + strand, within HER17_RS19940 at 4480.535 kb on - strand, within HER17_RS19940 at 4480.535 kb on - strand, within HER17_RS19940 at 4480.543 kb on + strand, within HER17_RS19940 at 4480.543 kb on + strand, within HER17_RS19940 at 4480.544 kb on - strand, within HER17_RS19940 at 4480.544 kb on - strand, within HER17_RS19940 at 4480.555 kb on + strand, within HER17_RS19940 at 4480.555 kb on + strand, within HER17_RS19940 at 4480.556 kb on - strand, within HER17_RS19940 at 4480.565 kb on + strand, within HER17_RS19940 at 4480.669 kb on + strand, within HER17_RS19940 at 4480.676 kb on - strand, within HER17_RS19940 at 4480.722 kb on + strand, within HER17_RS19940 at 4480.790 kb on - strand, within HER17_RS19940 at 4480.842 kb on + strand, within HER17_RS19940 at 4480.842 kb on + strand, within HER17_RS19940 at 4480.843 kb on - strand, within HER17_RS19940
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 4,478,368 - HER17_RS19925 0.59 -0.1 4,478,422 + HER17_RS19925 0.66 -0.2 4,478,452 - HER17_RS19925 0.70 +1.2 4,478,467 + HER17_RS19925 0.72 -0.1 4,478,610 + -1.1 4,478,611 - -0.5 4,478,634 + -1.3 4,478,634 + -0.9 4,478,634 + -0.6 4,478,634 + +1.3 4,478,634 + +0.1 4,478,634 + +0.3 4,478,635 - +0.2 4,478,636 + -1.2 4,478,636 + -1.1 4,478,636 + +0.4 4,478,637 - -1.5 4,478,637 - -0.2 4,478,637 - +0.8 4,478,637 - +1.4 4,478,637 - -2.9 4,478,637 - -0.9 4,478,682 + -1.4 4,478,683 - -2.0 4,478,738 - -0.2 4,478,748 + -0.5 4,478,782 + +0.1 4,478,783 - +0.1 4,478,783 - -0.6 4,478,848 + HER17_RS19930 0.20 +1.0 4,478,848 + HER17_RS19930 0.20 -2.9 4,478,849 - HER17_RS19930 0.20 +4.9 4,478,904 + HER17_RS19930 0.31 -2.4 4,478,970 + HER17_RS19930 0.44 -0.2 4,478,970 + HER17_RS19930 0.44 -0.2 4,478,970 + HER17_RS19930 0.44 -1.1 4,478,970 + HER17_RS19930 0.44 +0.8 4,478,970 + HER17_RS19930 0.44 -0.9 4,478,970 + HER17_RS19930 0.44 -1.2 4,478,970 + HER17_RS19930 0.44 -0.9 4,478,970 + HER17_RS19930 0.44 +0.4 4,478,971 - HER17_RS19930 0.44 +1.2 4,478,971 - HER17_RS19930 0.44 +1.0 4,478,971 - HER17_RS19930 0.44 -0.2 4,478,971 - HER17_RS19930 0.44 -1.6 4,479,000 + HER17_RS19930 0.50 -0.6 4,479,000 + HER17_RS19930 0.50 +1.1 4,479,001 - HER17_RS19930 0.50 +1.6 4,479,001 - HER17_RS19930 0.50 +1.0 4,479,056 + HER17_RS19930 0.61 +1.7 4,479,134 - HER17_RS19930 0.77 -1.2 4,479,134 - HER17_RS19930 0.77 +1.0 4,479,148 + HER17_RS19930 0.80 +2.6 4,479,148 + HER17_RS19930 0.80 -0.4 4,479,155 + HER17_RS19930 0.81 -0.7 4,479,156 - HER17_RS19930 0.81 -0.2 4,479,210 - -0.6 4,479,212 + -0.9 4,479,213 - -0.9 4,479,216 + -1.9 4,479,216 + +0.7 4,479,342 - HER17_RS19935 0.13 -0.9 4,479,419 + HER17_RS19935 0.25 -0.2 4,479,419 + HER17_RS19935 0.25 -1.2 4,479,456 - HER17_RS19935 0.31 -0.4 4,479,472 + HER17_RS19935 0.34 +0.1 4,479,473 - HER17_RS19935 0.34 +0.8 4,479,511 - HER17_RS19935 0.40 +0.4 4,479,582 + HER17_RS19935 0.51 -0.6 4,479,582 + HER17_RS19935 0.51 +1.0 4,479,582 + HER17_RS19935 0.51 +1.7 4,479,583 - HER17_RS19935 0.51 +0.3 4,479,666 - HER17_RS19935 0.64 -1.6 4,479,666 - HER17_RS19935 0.64 +5.9 4,479,689 + HER17_RS19935 0.67 +2.1 4,479,690 - HER17_RS19935 0.68 -0.7 4,479,690 - HER17_RS19935 0.68 -0.9 4,479,747 + HER17_RS19935 0.76 +1.4 4,479,748 - HER17_RS19935 0.77 +0.4 4,479,748 - HER17_RS19935 0.77 +1.4 4,479,765 + HER17_RS19935 0.79 -1.2 4,479,766 - HER17_RS19935 0.79 -0.2 4,479,775 + HER17_RS19935 0.81 -1.2 4,479,814 + HER17_RS19935 0.87 -1.8 4,479,815 - HER17_RS19935 0.87 -1.3 4,479,815 - HER17_RS19935 0.87 -0.1 4,479,815 - HER17_RS19935 0.87 -0.2 4,479,934 - -0.2 4,479,992 - +0.4 4,480,037 - +0.4 4,480,037 - -2.7 4,480,037 - -0.0 4,480,041 + -2.3 4,480,041 + +1.9 4,480,041 + -2.2 4,480,042 - +0.3 4,480,042 - -1.8 4,480,042 - -1.5 4,480,042 - +0.5 4,480,053 + +1.2 4,480,053 + -2.9 4,480,054 - +0.0 4,480,054 - -1.0 4,480,066 + +0.4 4,480,066 + -0.2 4,480,066 + +0.1 4,480,066 + +1.4 4,480,066 + +0.1 4,480,067 - -0.6 4,480,067 - +0.1 4,480,207 + -0.2 4,480,207 + -1.2 4,480,207 + -1.2 4,480,207 + +3.0 4,480,207 + +0.8 4,480,208 - -2.3 4,480,208 - -0.6 4,480,208 - -0.6 4,480,208 - -0.0 4,480,217 - -0.0 4,480,273 - +1.3 4,480,273 - +0.1 4,480,317 + -2.4 4,480,317 + +1.1 4,480,318 - +1.0 4,480,318 - +0.5 4,480,318 - -0.6 4,480,433 - +0.8 4,480,443 + HER17_RS19940 0.10 -0.2 4,480,443 + HER17_RS19940 0.10 -0.1 4,480,510 + HER17_RS19940 0.16 +0.7 4,480,510 + HER17_RS19940 0.16 +0.0 4,480,512 + HER17_RS19940 0.16 -1.4 4,480,512 + HER17_RS19940 0.16 +0.7 4,480,512 + HER17_RS19940 0.16 -0.3 4,480,522 + HER17_RS19940 0.17 +0.5 4,480,534 + HER17_RS19940 0.18 +1.4 4,480,535 - HER17_RS19940 0.18 -0.2 4,480,535 - HER17_RS19940 0.18 -0.8 4,480,543 + HER17_RS19940 0.18 -1.9 4,480,543 + HER17_RS19940 0.18 +0.4 4,480,544 - HER17_RS19940 0.18 +1.6 4,480,544 - HER17_RS19940 0.18 +0.2 4,480,555 + HER17_RS19940 0.19 -1.3 4,480,555 + HER17_RS19940 0.19 +3.7 4,480,556 - HER17_RS19940 0.19 -1.3 4,480,565 + HER17_RS19940 0.20 +1.4 4,480,669 + HER17_RS19940 0.28 +0.4 4,480,676 - HER17_RS19940 0.29 -1.2 4,480,722 + HER17_RS19940 0.33 -1.3 4,480,790 - HER17_RS19940 0.38 -0.6 4,480,842 + HER17_RS19940 0.42 +1.5 4,480,842 + HER17_RS19940 0.42 +0.4 4,480,843 - HER17_RS19940 0.42 +0.8
Or see this region's nucleotide sequence