Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS19810 and HER17_RS19815 are separated by 107 nucleotides HER17_RS19815 and HER17_RS19820 are separated by 4 nucleotides HER17_RS19820 and HER17_RS19825 are separated by 336 nucleotides
HER17_RS19810: HER17_RS19810 - 3',5'-cyclic-AMP phosphodiesterase, at 4,448,764 to 4,449,591
_RS19810
HER17_RS19815: HER17_RS19815 - DUF1249 family protein, at 4,449,699 to 4,450,130
_RS19815
HER17_RS19820: HER17_RS19820 - ADP-ribose diphosphatase, at 4,450,135 to 4,450,767
_RS19820
HER17_RS19825: HER17_RS19825 - outer membrane channel protein TolC, at 4,451,104 to 4,452,498
_RS19825
Position (kb) 4450
4451 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 4449.220 kb on - strand, within HER17_RS19810 at 4449.265 kb on - strand, within HER17_RS19810 at 4449.265 kb on - strand, within HER17_RS19810 at 4449.326 kb on - strand, within HER17_RS19810 at 4449.467 kb on + strand, within HER17_RS19810 at 4449.471 kb on + strand, within HER17_RS19810 at 4449.472 kb on - strand, within HER17_RS19810 at 4449.472 kb on - strand, within HER17_RS19810 at 4449.472 kb on - strand, within HER17_RS19810 at 4449.476 kb on + strand, within HER17_RS19810 at 4449.477 kb on - strand, within HER17_RS19810 at 4449.525 kb on + strand at 4449.526 kb on - strand at 4449.526 kb on - strand at 4449.526 kb on - strand at 4449.526 kb on - strand at 4449.526 kb on - strand at 4449.526 kb on - strand at 4449.533 kb on - strand at 4449.539 kb on - strand at 4449.607 kb on - strand at 4449.610 kb on + strand at 4449.610 kb on + strand at 4449.611 kb on - strand at 4449.622 kb on + strand at 4449.700 kb on + strand at 4449.701 kb on - strand at 4449.701 kb on - strand at 4449.736 kb on + strand at 4449.753 kb on + strand, within HER17_RS19815 at 4449.804 kb on + strand, within HER17_RS19815 at 4449.804 kb on + strand, within HER17_RS19815 at 4449.805 kb on - strand, within HER17_RS19815 at 4449.812 kb on + strand, within HER17_RS19815 at 4449.812 kb on + strand, within HER17_RS19815 at 4449.813 kb on - strand, within HER17_RS19815 at 4449.813 kb on - strand, within HER17_RS19815 at 4449.815 kb on + strand, within HER17_RS19815 at 4449.816 kb on - strand, within HER17_RS19815 at 4449.826 kb on + strand, within HER17_RS19815 at 4449.889 kb on + strand, within HER17_RS19815 at 4449.889 kb on + strand, within HER17_RS19815 at 4449.889 kb on + strand, within HER17_RS19815 at 4449.889 kb on + strand, within HER17_RS19815 at 4449.889 kb on + strand, within HER17_RS19815 at 4449.890 kb on - strand, within HER17_RS19815 at 4449.890 kb on - strand, within HER17_RS19815 at 4449.896 kb on + strand, within HER17_RS19815 at 4449.897 kb on - strand, within HER17_RS19815 at 4449.948 kb on - strand, within HER17_RS19815 at 4449.965 kb on + strand, within HER17_RS19815 at 4449.965 kb on + strand, within HER17_RS19815 at 4449.965 kb on + strand, within HER17_RS19815 at 4449.974 kb on + strand, within HER17_RS19815 at 4449.974 kb on + strand, within HER17_RS19815 at 4449.974 kb on + strand, within HER17_RS19815 at 4449.997 kb on + strand, within HER17_RS19815 at 4449.998 kb on - strand, within HER17_RS19815 at 4450.008 kb on - strand, within HER17_RS19815 at 4450.019 kb on - strand, within HER17_RS19815 at 4450.089 kb on + strand at 4450.090 kb on - strand at 4450.118 kb on + strand at 4450.118 kb on + strand at 4450.119 kb on - strand at 4450.119 kb on - strand at 4450.238 kb on + strand, within HER17_RS19820 at 4450.239 kb on - strand, within HER17_RS19820 at 4450.264 kb on + strand, within HER17_RS19820 at 4450.264 kb on + strand, within HER17_RS19820 at 4450.264 kb on + strand, within HER17_RS19820 at 4450.337 kb on - strand, within HER17_RS19820 at 4450.337 kb on - strand, within HER17_RS19820 at 4450.337 kb on - strand, within HER17_RS19820 at 4450.337 kb on - strand, within HER17_RS19820 at 4450.379 kb on + strand, within HER17_RS19820 at 4450.379 kb on + strand, within HER17_RS19820 at 4450.380 kb on - strand, within HER17_RS19820 at 4450.380 kb on - strand, within HER17_RS19820 at 4450.380 kb on - strand, within HER17_RS19820 at 4450.380 kb on - strand, within HER17_RS19820 at 4450.380 kb on - strand, within HER17_RS19820 at 4450.380 kb on - strand, within HER17_RS19820 at 4450.380 kb on - strand, within HER17_RS19820 at 4450.520 kb on + strand, within HER17_RS19820 at 4450.543 kb on + strand, within HER17_RS19820 at 4450.544 kb on - strand, within HER17_RS19820 at 4450.544 kb on - strand, within HER17_RS19820 at 4450.544 kb on - strand, within HER17_RS19820 at 4450.544 kb on - strand, within HER17_RS19820 at 4450.544 kb on - strand, within HER17_RS19820 at 4450.546 kb on + strand, within HER17_RS19820 at 4450.546 kb on + strand, within HER17_RS19820 at 4450.547 kb on - strand, within HER17_RS19820 at 4450.547 kb on - strand, within HER17_RS19820 at 4450.547 kb on - strand, within HER17_RS19820 at 4450.549 kb on + strand, within HER17_RS19820 at 4450.550 kb on - strand, within HER17_RS19820 at 4450.550 kb on - strand, within HER17_RS19820 at 4450.550 kb on - strand, within HER17_RS19820 at 4450.694 kb on + strand, within HER17_RS19820 at 4450.695 kb on - strand, within HER17_RS19820 at 4450.714 kb on - strand at 4450.721 kb on - strand at 4450.721 kb on - strand at 4450.741 kb on - strand at 4450.788 kb on + strand at 4450.788 kb on + strand at 4450.788 kb on + strand at 4450.788 kb on + strand at 4450.789 kb on - strand at 4450.789 kb on - strand at 4450.789 kb on - strand at 4450.789 kb on - strand at 4450.789 kb on - strand at 4450.791 kb on + strand at 4450.791 kb on + strand at 4450.792 kb on - strand at 4450.792 kb on - strand at 4450.809 kb on + strand at 4450.809 kb on + strand at 4450.810 kb on - strand at 4450.830 kb on + strand at 4450.831 kb on - strand at 4450.832 kb on + strand at 4450.832 kb on + strand at 4450.833 kb on - strand at 4450.833 kb on - strand at 4450.857 kb on - strand at 4450.918 kb on + strand at 4450.963 kb on + strand at 4450.963 kb on + strand at 4450.981 kb on + strand at 4450.982 kb on - strand at 4450.982 kb on - strand at 4450.982 kb on - strand at 4450.982 kb on - strand at 4451.009 kb on + strand at 4451.019 kb on + strand at 4451.020 kb on - strand at 4451.035 kb on + strand at 4451.036 kb on - strand at 4451.048 kb on + strand at 4451.048 kb on + strand at 4451.049 kb on - strand at 4451.152 kb on - strand at 4451.152 kb on - strand at 4451.311 kb on + strand, within HER17_RS19825 at 4451.311 kb on + strand, within HER17_RS19825 at 4451.311 kb on + strand, within HER17_RS19825 at 4451.313 kb on + strand, within HER17_RS19825 at 4451.313 kb on + strand, within HER17_RS19825 at 4451.313 kb on + strand, within HER17_RS19825 at 4451.313 kb on + strand, within HER17_RS19825 at 4451.313 kb on + strand, within HER17_RS19825 at 4451.314 kb on - strand, within HER17_RS19825 at 4451.314 kb on - strand, within HER17_RS19825 at 4451.314 kb on - strand, within HER17_RS19825 at 4451.314 kb on - strand, within HER17_RS19825 at 4451.317 kb on + strand, within HER17_RS19825 at 4451.318 kb on - strand, within HER17_RS19825 at 4451.318 kb on - strand, within HER17_RS19825 at 4451.318 kb on - strand, within HER17_RS19825 at 4451.318 kb on - strand, within HER17_RS19825 at 4451.318 kb on - strand, within HER17_RS19825 at 4451.318 kb on - strand, within HER17_RS19825 at 4451.318 kb on - strand, within HER17_RS19825 at 4451.319 kb on + strand, within HER17_RS19825 at 4451.320 kb on - strand, within HER17_RS19825 at 4451.398 kb on + strand, within HER17_RS19825 at 4451.401 kb on - strand, within HER17_RS19825 at 4451.461 kb on + strand, within HER17_RS19825 at 4451.461 kb on + strand, within HER17_RS19825 at 4451.462 kb on - strand, within HER17_RS19825 at 4451.462 kb on - strand, within HER17_RS19825 at 4451.507 kb on - strand, within HER17_RS19825 at 4451.542 kb on + strand, within HER17_RS19825 at 4451.543 kb on - strand, within HER17_RS19825 at 4451.543 kb on - strand, within HER17_RS19825 at 4451.544 kb on + strand, within HER17_RS19825 at 4451.544 kb on + strand, within HER17_RS19825 at 4451.545 kb on - strand, within HER17_RS19825 at 4451.569 kb on + strand, within HER17_RS19825 at 4451.579 kb on + strand, within HER17_RS19825 at 4451.580 kb on - strand, within HER17_RS19825
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 4,449,220 - HER17_RS19810 0.55 -0.4 4,449,265 - HER17_RS19810 0.61 +1.7 4,449,265 - HER17_RS19810 0.61 +1.1 4,449,326 - HER17_RS19810 0.68 -0.2 4,449,467 + HER17_RS19810 0.85 -1.6 4,449,471 + HER17_RS19810 0.85 -0.5 4,449,472 - HER17_RS19810 0.86 +1.1 4,449,472 - HER17_RS19810 0.86 +2.1 4,449,472 - HER17_RS19810 0.86 +1.3 4,449,476 + HER17_RS19810 0.86 +0.5 4,449,477 - HER17_RS19810 0.86 +1.8 4,449,525 + +2.1 4,449,526 - +0.6 4,449,526 - -0.3 4,449,526 - +2.4 4,449,526 - +2.1 4,449,526 - +1.9 4,449,526 - +3.1 4,449,533 - +1.2 4,449,539 - +0.9 4,449,607 - -1.2 4,449,610 + +0.8 4,449,610 + +1.2 4,449,611 - -0.7 4,449,622 + +0.2 4,449,700 + -0.6 4,449,701 - +1.2 4,449,701 - -0.9 4,449,736 + +0.3 4,449,753 + HER17_RS19815 0.12 -1.1 4,449,804 + HER17_RS19815 0.24 -0.1 4,449,804 + HER17_RS19815 0.24 -1.3 4,449,805 - HER17_RS19815 0.25 -0.8 4,449,812 + HER17_RS19815 0.26 +2.0 4,449,812 + HER17_RS19815 0.26 -1.3 4,449,813 - HER17_RS19815 0.26 +1.1 4,449,813 - HER17_RS19815 0.26 -0.4 4,449,815 + HER17_RS19815 0.27 -0.7 4,449,816 - HER17_RS19815 0.27 +1.1 4,449,826 + HER17_RS19815 0.29 +1.8 4,449,889 + HER17_RS19815 0.44 -0.2 4,449,889 + HER17_RS19815 0.44 +0.5 4,449,889 + HER17_RS19815 0.44 -0.9 4,449,889 + HER17_RS19815 0.44 +1.9 4,449,889 + HER17_RS19815 0.44 +0.0 4,449,890 - HER17_RS19815 0.44 -2.4 4,449,890 - HER17_RS19815 0.44 -1.4 4,449,896 + HER17_RS19815 0.46 -1.2 4,449,897 - HER17_RS19815 0.46 -0.7 4,449,948 - HER17_RS19815 0.58 -0.1 4,449,965 + HER17_RS19815 0.62 -0.6 4,449,965 + HER17_RS19815 0.62 +1.0 4,449,965 + HER17_RS19815 0.62 -0.3 4,449,974 + HER17_RS19815 0.64 -1.2 4,449,974 + HER17_RS19815 0.64 -0.9 4,449,974 + HER17_RS19815 0.64 -1.3 4,449,997 + HER17_RS19815 0.69 -0.6 4,449,998 - HER17_RS19815 0.69 +1.2 4,450,008 - HER17_RS19815 0.72 -1.1 4,450,019 - HER17_RS19815 0.74 -2.1 4,450,089 + -2.1 4,450,090 - +1.1 4,450,118 + -0.5 4,450,118 + -0.4 4,450,119 - -1.5 4,450,119 - -1.1 4,450,238 + HER17_RS19820 0.16 +2.9 4,450,239 - HER17_RS19820 0.16 +3.2 4,450,264 + HER17_RS19820 0.20 -1.4 4,450,264 + HER17_RS19820 0.20 +0.2 4,450,264 + HER17_RS19820 0.20 +0.1 4,450,337 - HER17_RS19820 0.32 -2.2 4,450,337 - HER17_RS19820 0.32 -0.0 4,450,337 - HER17_RS19820 0.32 +1.1 4,450,337 - HER17_RS19820 0.32 +1.0 4,450,379 + HER17_RS19820 0.39 -0.9 4,450,379 + HER17_RS19820 0.39 -1.6 4,450,380 - HER17_RS19820 0.39 +3.1 4,450,380 - HER17_RS19820 0.39 -1.3 4,450,380 - HER17_RS19820 0.39 -0.5 4,450,380 - HER17_RS19820 0.39 +0.2 4,450,380 - HER17_RS19820 0.39 +0.6 4,450,380 - HER17_RS19820 0.39 +2.0 4,450,380 - HER17_RS19820 0.39 -1.8 4,450,520 + HER17_RS19820 0.61 +0.1 4,450,543 + HER17_RS19820 0.64 +0.8 4,450,544 - HER17_RS19820 0.65 -1.0 4,450,544 - HER17_RS19820 0.65 -1.2 4,450,544 - HER17_RS19820 0.65 -0.6 4,450,544 - HER17_RS19820 0.65 -0.1 4,450,544 - HER17_RS19820 0.65 +1.9 4,450,546 + HER17_RS19820 0.65 -0.6 4,450,546 + HER17_RS19820 0.65 -0.7 4,450,547 - HER17_RS19820 0.65 -0.6 4,450,547 - HER17_RS19820 0.65 -0.8 4,450,547 - HER17_RS19820 0.65 -0.1 4,450,549 + HER17_RS19820 0.65 -0.0 4,450,550 - HER17_RS19820 0.66 -2.1 4,450,550 - HER17_RS19820 0.66 -0.8 4,450,550 - HER17_RS19820 0.66 -0.7 4,450,694 + HER17_RS19820 0.88 -0.9 4,450,695 - HER17_RS19820 0.88 -1.1 4,450,714 - -1.2 4,450,721 - +0.4 4,450,721 - -1.7 4,450,741 - +0.0 4,450,788 + +1.0 4,450,788 + -0.8 4,450,788 + +0.3 4,450,788 + -1.4 4,450,789 - -0.9 4,450,789 - -0.9 4,450,789 - -2.6 4,450,789 - -1.2 4,450,789 - +1.4 4,450,791 + -0.5 4,450,791 + -0.3 4,450,792 - -0.2 4,450,792 - +3.2 4,450,809 + -1.5 4,450,809 + -0.2 4,450,810 - -0.6 4,450,830 + +1.0 4,450,831 - -0.8 4,450,832 + +1.1 4,450,832 + +4.4 4,450,833 - +0.9 4,450,833 - -0.3 4,450,857 - -0.9 4,450,918 + -0.5 4,450,963 + +0.0 4,450,963 + +0.7 4,450,981 + -1.1 4,450,982 - -2.2 4,450,982 - -0.6 4,450,982 - -1.9 4,450,982 - +0.8 4,451,009 + -0.9 4,451,019 + -0.2 4,451,020 - +0.1 4,451,035 + -0.7 4,451,036 - -0.6 4,451,048 + -0.6 4,451,048 + -0.2 4,451,049 - -0.1 4,451,152 - +0.1 4,451,152 - -1.8 4,451,311 + HER17_RS19825 0.15 -1.7 4,451,311 + HER17_RS19825 0.15 -1.2 4,451,311 + HER17_RS19825 0.15 -2.4 4,451,313 + HER17_RS19825 0.15 +5.0 4,451,313 + HER17_RS19825 0.15 -1.2 4,451,313 + HER17_RS19825 0.15 +0.8 4,451,313 + HER17_RS19825 0.15 -1.9 4,451,313 + HER17_RS19825 0.15 -0.4 4,451,314 - HER17_RS19825 0.15 -0.6 4,451,314 - HER17_RS19825 0.15 -0.4 4,451,314 - HER17_RS19825 0.15 -1.4 4,451,314 - HER17_RS19825 0.15 +0.8 4,451,317 + HER17_RS19825 0.15 +5.4 4,451,318 - HER17_RS19825 0.15 -2.2 4,451,318 - HER17_RS19825 0.15 -0.0 4,451,318 - HER17_RS19825 0.15 -1.5 4,451,318 - HER17_RS19825 0.15 -2.5 4,451,318 - HER17_RS19825 0.15 +1.4 4,451,318 - HER17_RS19825 0.15 -1.8 4,451,318 - HER17_RS19825 0.15 +0.4 4,451,319 + HER17_RS19825 0.15 -1.2 4,451,320 - HER17_RS19825 0.15 -0.2 4,451,398 + HER17_RS19825 0.21 -0.6 4,451,401 - HER17_RS19825 0.21 -0.2 4,451,461 + HER17_RS19825 0.26 -1.9 4,451,461 + HER17_RS19825 0.26 +0.9 4,451,462 - HER17_RS19825 0.26 -1.3 4,451,462 - HER17_RS19825 0.26 -0.2 4,451,507 - HER17_RS19825 0.29 -1.9 4,451,542 + HER17_RS19825 0.31 -2.5 4,451,543 - HER17_RS19825 0.31 +1.0 4,451,543 - HER17_RS19825 0.31 -0.6 4,451,544 + HER17_RS19825 0.32 +1.4 4,451,544 + HER17_RS19825 0.32 +8.8 4,451,545 - HER17_RS19825 0.32 -0.4 4,451,569 + HER17_RS19825 0.33 -1.6 4,451,579 + HER17_RS19825 0.34 -2.4 4,451,580 - HER17_RS19825 0.34 -1.4
Or see this region's nucleotide sequence