Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19040

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,286,811	+				+3.6
4,286,811	+				+0.2
4,286,811	+				-0.9
4,286,811	+				-0.9
4,286,811	+				-1.3
4,286,811	+				-0.2
4,286,811	+				-1.2
4,286,812	-				-0.4
4,286,812	-				+1.4
4,286,812	-				-0.7
4,286,812	-				-0.8
4,286,812	-				-1.2
4,286,813	+				-0.2
4,286,813	+				-0.1
4,286,814	-				+0.6
4,286,832	+				-0.5
4,286,832	+				-0.7
4,286,832	+				+0.1
4,286,832	+				-1.2
4,286,833	-				+0.0
4,286,833	-				-1.2
4,286,849	+				+3.6
4,286,849	+				-0.2
4,286,856	+				+0.2
4,286,856	+				-1.1
4,286,872	-				-0.6
4,286,873	+				-2.2
4,286,873	+				-0.6
4,286,873	+				+0.9
4,286,874	-				-1.0
4,286,874	-				+0.6
4,286,889	+				-0.9
4,286,889	+				-1.6
4,286,890	-				+0.2
4,286,890	-				-0.5
4,286,986	-				-0.5
4,287,168	+		HER17_RS19035	0.33	+2.4
4,287,168	+		HER17_RS19035	0.33	+0.7
4,287,168	+		HER17_RS19035	0.33	-0.3
4,287,168	+		HER17_RS19035	0.33	-1.9
4,287,169	-		HER17_RS19035	0.33	+4.4
4,287,256	-		HER17_RS19035	0.45	-0.4
4,287,256	-		HER17_RS19035	0.45	-0.5
4,287,301	+		HER17_RS19035	0.51	-0.4
4,287,301	+		HER17_RS19035	0.51	+0.7
4,287,302	-		HER17_RS19035	0.52	+0.4
4,287,320	-		HER17_RS19035	0.54	-0.3
4,287,320	-		HER17_RS19035	0.54	-0.3
4,287,320	-		HER17_RS19035	0.54	+5.2
4,287,333	+		HER17_RS19035	0.56	-1.6
4,287,334	-		HER17_RS19035	0.56	-2.2
4,287,354	+		HER17_RS19035	0.59	+0.1
4,287,355	-		HER17_RS19035	0.59	+0.0
4,287,539	+		HER17_RS19035	0.85	-0.7
4,287,570	+		HER17_RS19035	0.89	-0.2
4,287,573	+		HER17_RS19035	0.89	+0.0
4,287,573	+		HER17_RS19035	0.89	+1.4
4,287,574	-		HER17_RS19035	0.90	-1.3
4,287,574	-		HER17_RS19035	0.90	+1.3
4,287,574	-		HER17_RS19035	0.90	+1.0
4,287,633	+				-0.1
4,287,633	+				+2.4
4,287,688	+				-2.6
4,287,689	-				-1.7
4,287,689	-				+0.7
4,287,799	+				-1.7
4,287,799	+				+0.7
4,287,851	+				+1.2
4,287,852	-				+0.1
4,287,852	-				-1.9
4,287,911	+				+0.1
4,287,941	+		HER17_RS19040	0.11	-0.6
4,287,954	-		HER17_RS19040	0.12	+1.4
4,287,992	+		HER17_RS19040	0.15	-1.2
4,287,993	-		HER17_RS19040	0.15	-1.2
4,288,066	+		HER17_RS19040	0.21	-0.3
4,288,067	-		HER17_RS19040	0.21	+0.7
4,288,344	-		HER17_RS19040	0.43	+0.4
4,288,434	+		HER17_RS19040	0.50	-0.4
4,288,434	+		HER17_RS19040	0.50	+1.9
4,288,435	-		HER17_RS19040	0.50	-0.2
4,288,474	+		HER17_RS19040	0.53	+0.0
4,288,474	+		HER17_RS19040	0.53	+1.4
4,288,583	+		HER17_RS19040	0.61	+0.1
4,288,584	-		HER17_RS19040	0.62	+1.0
4,288,585	+		HER17_RS19040	0.62	-1.9
4,288,585	+		HER17_RS19040	0.62	-0.7
4,288,585	+		HER17_RS19040	0.62	-0.1
4,288,628	+		HER17_RS19040	0.65	+0.6
4,288,629	-		HER17_RS19040	0.65	-1.2
4,288,629	-		HER17_RS19040	0.65	+0.6
4,288,656	-		HER17_RS19040	0.67	-0.9
4,288,664	+		HER17_RS19040	0.68	+5.0
4,288,665	-		HER17_RS19040	0.68	-0.6
4,288,716	-		HER17_RS19040	0.72	+0.4
4,288,726	+		HER17_RS19040	0.73	-0.2
4,288,726	+		HER17_RS19040	0.73	+0.3
4,288,727	-		HER17_RS19040	0.73	-0.7
4,288,727	-		HER17_RS19040	0.73	+1.0
4,288,727	-		HER17_RS19040	0.73	-1.2
4,288,727	-		HER17_RS19040	0.73	-1.0
4,288,727	-		HER17_RS19040	0.73	-0.5
4,288,729	+		HER17_RS19040	0.73	-0.7
4,288,729	+		HER17_RS19040	0.73	+0.6
4,288,730	-		HER17_RS19040	0.73	+0.3
4,288,730	-		HER17_RS19040	0.73	+0.9
4,288,809	+		HER17_RS19040	0.79	-0.7
4,288,887	+		HER17_RS19040	0.85	+0.6
4,288,888	-		HER17_RS19040	0.85	+1.1
4,288,929	+		HER17_RS19040	0.88	-0.2
4,288,929	+		HER17_RS19040	0.88	+1.2
4,288,930	-		HER17_RS19040	0.89	-2.1
4,288,930	-		HER17_RS19040	0.89	-0.2
4,288,930	-		HER17_RS19040	0.89	-0.3
4,288,933	+		HER17_RS19040	0.89	+1.4
4,288,933	+		HER17_RS19040	0.89	-1.1
4,288,933	+		HER17_RS19040	0.89	-2.6
4,288,933	+		HER17_RS19040	0.89	+1.2
4,288,933	+		HER17_RS19040	0.89	+3.2
4,288,933	+		HER17_RS19040	0.89	-1.9
4,288,934	-		HER17_RS19040	0.89	+0.6
4,288,934	-		HER17_RS19040	0.89	+0.7
4,288,934	-		HER17_RS19040	0.89	+1.1
4,288,934	-		HER17_RS19040	0.89	+0.2
4,288,953	-				-0.6
4,288,997	+				+1.7
4,288,997	+				+0.4
4,289,003	+				-0.6
4,289,004	-				+1.0
4,289,034	+				-1.6
4,289,035	-				-0.2
4,289,035	-				+0.3
4,289,079	+				-1.6
4,289,079	+				+0.7
4,289,080	-				+0.6
4,289,080	-				-2.0
4,289,080	-				+7.4
4,289,080	-				-0.2
4,289,080	-				-1.7
4,289,087	+				-0.1
4,289,088	-				-0.2
4,289,116	-				+0.9
4,289,116	-				-0.2
4,289,139	-				+1.4
4,289,157	+				+2.5
4,289,171	-				+1.1
4,289,175	-				-0.2
4,289,175	-				-0.3
4,289,175	-				-1.3
4,289,221	+				-1.2
4,289,229	+				-1.1
4,289,229	+				+0.4
4,289,267	+				-0.9
4,289,267	+				-0.9
4,289,268	-				-0.2
4,289,268	-				-1.1
4,289,277	+				+0.7
4,289,278	-				-0.7
4,289,288	+				+0.5
4,289,288	+				+0.6
4,289,289	-				-0.6
4,289,313	-				+0.1
4,289,313	-				-1.1
4,289,318	-				+1.0
4,289,318	-				+0.6
4,289,318	-				-1.6
4,289,318	-				-3.2
4,289,328	+				+0.2
4,289,329	-				-1.5
4,289,332	+				-0.9
4,289,332	+				-0.9
4,289,332	+				-1.9
4,289,332	+				+1.4
4,289,391	+				+0.2
4,289,391	+				-1.6
4,289,391	+				+0.0
4,289,391	+				-1.6
4,289,392	-				-0.5
4,289,392	-				+0.6
4,289,392	-				+0.7
4,289,393	+				-0.2
4,289,435	+				-0.6
4,289,479	+				+2.2
4,289,479	+				-1.1
4,289,479	+				-0.9
4,289,488	-				-0.3
4,289,488	-				-0.0
4,289,597	+		HER17_RS19045	0.10	-1.7
4,289,597	+		HER17_RS19045	0.10	+0.8
4,289,598	-		HER17_RS19045	0.10	-1.6
4,289,598	-		HER17_RS19045	0.10	-1.0
4,289,598	-		HER17_RS19045	0.10	+0.5
4,289,629	+		HER17_RS19045	0.14	+1.7
4,289,630	-		HER17_RS19045	0.14	+1.4
4,289,659	-		HER17_RS19045	0.18	+0.0
4,289,709	-		HER17_RS19045	0.24	-1.3
4,289,754	+		HER17_RS19045	0.30	-0.1
4,289,755	-		HER17_RS19045	0.30	-0.6
4,289,755	-		HER17_RS19045	0.30	+0.2
4,289,755	-		HER17_RS19045	0.30	-1.4
4,289,755	-		HER17_RS19045	0.30	-3.6
4,289,759	+		HER17_RS19045	0.30	-1.3
4,289,772	-		HER17_RS19045	0.32	-0.4
4,289,781	+		HER17_RS19045	0.33	+0.8
4,289,781	+		HER17_RS19045	0.33	+1.4
4,289,781	+		HER17_RS19045	0.33	-1.1
4,289,782	-		HER17_RS19045	0.33	-0.7
4,289,782	-		HER17_RS19045	0.33	+2.7
4,289,784	+		HER17_RS19045	0.34	+0.6
4,289,785	-		HER17_RS19045	0.34	+1.1
4,289,822	-		HER17_RS19045	0.38	-1.1
4,289,873	+		HER17_RS19045	0.45	-0.9
4,289,873	+		HER17_RS19045	0.45	+0.4
4,289,874	-		HER17_RS19045	0.45	-1.0
4,289,874	-		HER17_RS19045	0.45	-1.7
4,289,928	+		HER17_RS19045	0.52	-0.4
4,289,929	-		HER17_RS19045	0.52	-0.6
4,289,965	+		HER17_RS19045	0.56	-0.8
4,289,965	+		HER17_RS19045	0.56	-2.0
4,289,966	-		HER17_RS19045	0.56	+1.4
4,289,966	-		HER17_RS19045	0.56	-0.2
4,289,966	-		HER17_RS19045	0.56	+0.1
4,289,995	+		HER17_RS19045	0.60	+0.4
4,289,995	+		HER17_RS19045	0.60	-1.3
4,289,995	+		HER17_RS19045	0.60	-0.3
4,289,996	-		HER17_RS19045	0.60	-1.4
4,289,997	+		HER17_RS19045	0.60	+0.1
4,289,997	+		HER17_RS19045	0.60	-0.7
4,289,997	+		HER17_RS19045	0.60	+1.2
4,289,997	+		HER17_RS19045	0.60	-0.2
4,289,997	+		HER17_RS19045	0.60	-0.3
4,289,998	-		HER17_RS19045	0.60	-0.4
4,289,998	-		HER17_RS19045	0.60	+1.4
4,289,998	-		HER17_RS19045	0.60	+3.7
4,289,998	-		HER17_RS19045	0.60	+1.4
4,289,998	-		HER17_RS19045	0.60	+1.2
4,289,998	-		HER17_RS19045	0.60	-1.6
4,289,998	-		HER17_RS19045	0.60	-1.5
4,289,998	-		HER17_RS19045	0.60	-1.4
4,289,998	-		HER17_RS19045	0.60	-0.2