Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17365

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
3,915,557	+		HER17_RS17360	0.13	+0.7
3,915,557	+		HER17_RS17360	0.13	-0.6
3,915,557	+		HER17_RS17360	0.13	-0.0
3,915,558	-		HER17_RS17360	0.13	-1.1
3,915,577	+		HER17_RS17360	0.15	-0.7
3,915,649	-		HER17_RS17360	0.22	+0.0
3,915,676	+		HER17_RS17360	0.25	-0.5
3,915,752	-		HER17_RS17360	0.32	+0.9
3,915,772	-		HER17_RS17360	0.34	+2.5
3,915,787	-		HER17_RS17360	0.35	-1.2
3,915,802	+		HER17_RS17360	0.37	+0.2
3,915,802	+		HER17_RS17360	0.37	-1.3
3,915,803	-		HER17_RS17360	0.37	-0.4
3,915,803	-		HER17_RS17360	0.37	-0.1
3,915,803	-		HER17_RS17360	0.37	+1.1
3,915,974	+		HER17_RS17360	0.53	-0.7
3,915,974	+		HER17_RS17360	0.53	-0.1
3,915,974	+		HER17_RS17360	0.53	+1.4
3,915,975	-		HER17_RS17360	0.54	+0.9
3,915,975	-		HER17_RS17360	0.54	-0.3
3,915,975	-		HER17_RS17360	0.54	+2.0
3,915,975	-		HER17_RS17360	0.54	-2.9
3,915,975	-		HER17_RS17360	0.54	-0.6
3,916,019	-		HER17_RS17360	0.58	-0.8
3,916,038	+		HER17_RS17360	0.60	+4.1
3,916,039	-		HER17_RS17360	0.60	-0.4
3,916,039	-		HER17_RS17360	0.60	+0.1
3,916,051	-		HER17_RS17360	0.61	-1.2
3,916,066	+		HER17_RS17360	0.62	-0.5
3,916,070	+		HER17_RS17360	0.63	+0.4
3,916,070	+		HER17_RS17360	0.63	+0.8
3,916,071	-		HER17_RS17360	0.63	-0.7
3,916,102	-		HER17_RS17360	0.66	-0.2
3,916,205	+		HER17_RS17360	0.76	-0.2
3,916,228	+		HER17_RS17360	0.78	+0.9
3,916,228	+		HER17_RS17360	0.78	+0.2
3,916,229	-		HER17_RS17360	0.78	-0.8
3,916,229	-		HER17_RS17360	0.78	-0.3
3,916,360	-				-2.1
3,916,380	-				+0.1
3,916,395	+				-0.0
3,916,395	+				-0.5
3,916,407	-				+0.7
3,916,407	-				-0.3
3,916,453	-				+1.5
3,916,458	-				-0.9
3,916,489	-				+0.3
3,916,526	-				+0.1
3,916,532	+				+0.1
3,916,616	+				-0.7
3,916,655	+				-0.2
3,916,655	+				-1.8
3,916,655	+				-0.0
3,916,655	+				-0.2
3,916,656	-				+3.0
3,916,660	+				-0.9
3,916,714	+		HER17_RS17365	0.12	-0.6
3,916,715	-		HER17_RS17365	0.12	+0.7
3,916,715	-		HER17_RS17365	0.12	-0.9
3,916,801	+		HER17_RS17365	0.18	-1.6
3,916,801	+		HER17_RS17365	0.18	+0.6
3,916,859	-		HER17_RS17365	0.22	-1.2
3,916,859	-		HER17_RS17365	0.22	+2.5
3,916,919	+		HER17_RS17365	0.26	+1.8
3,916,919	+		HER17_RS17365	0.26	-0.4
3,916,919	+		HER17_RS17365	0.26	-0.9
3,916,919	+		HER17_RS17365	0.26	-0.3
3,916,920	-		HER17_RS17365	0.26	+0.5
3,916,920	-		HER17_RS17365	0.26	+1.3
3,916,938	-		HER17_RS17365	0.27	-0.4
3,917,007	+		HER17_RS17365	0.31	+0.5
3,917,139	-		HER17_RS17365	0.40	+1.5
3,917,139	-		HER17_RS17365	0.40	-0.3
3,917,155	+		HER17_RS17365	0.41	+1.5
3,917,156	-		HER17_RS17365	0.41	-1.1
3,917,172	-		HER17_RS17365	0.42	-0.5
3,917,293	+		HER17_RS17365	0.50	+0.9
3,917,294	-		HER17_RS17365	0.50	-1.2
3,917,310	+		HER17_RS17365	0.51	-1.3
3,917,310	+		HER17_RS17365	0.51	+0.6
3,917,310	+		HER17_RS17365	0.51	-1.4
3,917,310	+		HER17_RS17365	0.51	-1.5
3,917,311	-		HER17_RS17365	0.51	+1.3
3,917,373	-		HER17_RS17365	0.56	+2.0
3,917,373	-		HER17_RS17365	0.56	+2.5
3,917,375	+		HER17_RS17365	0.56	+1.8
3,917,405	+		HER17_RS17365	0.58	-0.1
3,917,437	+		HER17_RS17365	0.60	+0.3
3,917,437	+		HER17_RS17365	0.60	+0.4
3,917,451	+		HER17_RS17365	0.61	+0.2
3,917,451	+		HER17_RS17365	0.61	-0.5
3,917,466	-		HER17_RS17365	0.62	+1.4
3,917,558	+		HER17_RS17365	0.68	-0.1
3,917,582	+		HER17_RS17365	0.69	+0.9
3,917,582	+		HER17_RS17365	0.69	-0.8
3,917,583	-		HER17_RS17365	0.69	+0.7
3,917,588	+		HER17_RS17365	0.70	+1.2
3,917,589	-		HER17_RS17365	0.70	+0.5
3,917,591	-		HER17_RS17365	0.70	-0.6
3,917,620	+		HER17_RS17365	0.72	+0.1
3,917,620	+		HER17_RS17365	0.72	-0.9
3,917,621	-		HER17_RS17365	0.72	-1.5
3,917,643	+		HER17_RS17365	0.73	+0.1
3,917,677	+		HER17_RS17365	0.75	-0.5
3,917,689	-		HER17_RS17365	0.76	+0.8
3,917,748	-		HER17_RS17365	0.80	+0.1
3,917,748	-		HER17_RS17365	0.80	-0.1
3,917,786	+		HER17_RS17365	0.83	+2.3
3,917,794	-		HER17_RS17365	0.83	+0.6
3,917,859	+		HER17_RS17365	0.87	-0.5
3,917,859	+		HER17_RS17365	0.87	+0.2
3,917,865	+		HER17_RS17365	0.88	-0.5
3,917,866	-		HER17_RS17365	0.88	-0.5
3,917,868	+		HER17_RS17365	0.88	+0.4
3,917,869	-		HER17_RS17365	0.88	+0.4
3,917,904	+				+0.2
3,917,905	-				-1.1
3,917,905	-				+0.1
3,917,905	-				-0.6
3,917,919	+				+1.1
3,917,950	+				+0.4
3,918,010	-				-0.5
3,918,094	+				+0.1
3,918,094	+				+1.5
3,918,095	-				-1.5
3,918,136	+				-1.2
3,918,154	-				+0.2
3,918,176	-				-1.0
3,918,338	-				-0.1
3,918,384	+		HER17_RS17370	0.12	-0.9
3,918,397	+		HER17_RS17370	0.13	+1.0
3,918,403	+		HER17_RS17370	0.14	-1.5
3,918,433	+		HER17_RS17370	0.16	-0.1
3,918,472	+		HER17_RS17370	0.20	+1.8
3,918,473	-		HER17_RS17370	0.20	-0.9
3,918,554	-		HER17_RS17370	0.28	+1.1
3,918,554	-		HER17_RS17370	0.28	-0.3
3,918,562	+		HER17_RS17370	0.28	-1.6
3,918,562	+		HER17_RS17370	0.28	-0.3
3,918,574	+		HER17_RS17370	0.29	+2.1
3,918,574	+		HER17_RS17370	0.29	+1.5
3,918,599	+		HER17_RS17370	0.32	-0.1
3,918,670	+		HER17_RS17370	0.38	-0.9
3,918,675	+		HER17_RS17370	0.39	-1.4
3,918,675	+		HER17_RS17370	0.39	-0.0
3,918,675	+		HER17_RS17370	0.39	-1.5
3,918,677	+		HER17_RS17370	0.39	-0.6
3,918,677	+		HER17_RS17370	0.39	-1.0
3,918,678	-		HER17_RS17370	0.39	+0.0
3,918,678	-		HER17_RS17370	0.39	-1.1
3,918,719	+		HER17_RS17370	0.43	+0.7
3,918,774	+		HER17_RS17370	0.48	+0.5
3,918,775	-		HER17_RS17370	0.48	-0.0
3,918,787	+		HER17_RS17370	0.49	+0.8
3,918,872	+		HER17_RS17370	0.57	-0.7
3,918,873	-		HER17_RS17370	0.57	+0.2
3,918,884	-		HER17_RS17370	0.58	-0.9
3,918,960	-		HER17_RS17370	0.65	-0.6
3,918,971	+		HER17_RS17370	0.66	+0.0