Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16930

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
3,807,366	-		HER17_RS16925	0.62	+0.5
3,807,374	+		HER17_RS16925	0.62	-1.0
3,807,374	+		HER17_RS16925	0.62	-0.4
3,807,375	-		HER17_RS16925	0.62	+0.0
3,807,375	-		HER17_RS16925	0.62	+0.5
3,807,376	+		HER17_RS16925	0.63	+0.4
3,807,389	+		HER17_RS16925	0.63	-0.0
3,807,390	-		HER17_RS16925	0.63	-0.6
3,807,437	+		HER17_RS16925	0.65	+0.6
3,807,437	+		HER17_RS16925	0.65	-1.5
3,807,457	+		HER17_RS16925	0.66	-0.7
3,807,458	-		HER17_RS16925	0.66	-0.6
3,807,464	-		HER17_RS16925	0.66	-0.1
3,807,464	-		HER17_RS16925	0.66	-0.3
3,807,524	+		HER17_RS16925	0.68	-1.6
3,807,525	-		HER17_RS16925	0.68	+0.6
3,807,538	+		HER17_RS16925	0.69	-0.1
3,807,538	+		HER17_RS16925	0.69	-0.3
3,807,539	-		HER17_RS16925	0.69	-0.7
3,807,569	+		HER17_RS16925	0.70	-0.6
3,807,570	-		HER17_RS16925	0.70	+0.7
3,807,585	-		HER17_RS16925	0.71	-0.1
3,807,614	+		HER17_RS16925	0.72	+1.3
3,807,614	+		HER17_RS16925	0.72	-0.6
3,807,683	+		HER17_RS16925	0.75	-0.7
3,807,683	+		HER17_RS16925	0.75	+0.6
3,807,683	+		HER17_RS16925	0.75	+0.1
3,807,684	-		HER17_RS16925	0.75	-1.6
3,807,698	+		HER17_RS16925	0.75	-1.7
3,807,698	+		HER17_RS16925	0.75	-0.1
3,807,698	+		HER17_RS16925	0.75	-2.8
3,807,698	+		HER17_RS16925	0.75	+0.9
3,807,698	+		HER17_RS16925	0.75	-0.9
3,807,698	+		HER17_RS16925	0.75	+0.3
3,807,698	+		HER17_RS16925	0.75	+0.2
3,807,699	-		HER17_RS16925	0.75	+0.8
3,807,699	-		HER17_RS16925	0.75	+0.5
3,807,699	-		HER17_RS16925	0.75	-1.7
3,807,699	-		HER17_RS16925	0.75	-0.8
3,807,700	+		HER17_RS16925	0.75	-0.6
3,807,701	-		HER17_RS16925	0.76	-0.6
3,807,765	-		HER17_RS16925	0.78	-0.1
3,807,765	-		HER17_RS16925	0.78	+1.9
3,807,948	-		HER17_RS16925	0.85	-0.2
3,807,950	+		HER17_RS16925	0.85	-1.4
3,807,950	+		HER17_RS16925	0.85	+0.1
3,807,950	+		HER17_RS16925	0.85	-0.8
3,807,951	-		HER17_RS16925	0.86	+1.0
3,807,975	+		HER17_RS16925	0.86	+0.2
3,808,068	+				-0.6
3,808,190	+				+0.7
3,808,190	+				+3.3
3,808,190	+				+0.5
3,808,191	-				-0.2
3,808,275	+				-1.0
3,808,275	+				+1.1
3,808,276	-				+3.1
3,808,276	-				-1.7
3,808,306	+				-0.7
3,808,307	-				+0.0
3,808,307	-				-0.6
3,808,310	+				-2.1
3,808,311	-				-1.4
3,808,311	-				+0.4
3,808,345	-				-3.1
3,808,345	-				+3.1
3,808,420	-				-0.6
3,808,551	-		HER17_RS16930	0.27	+1.4
3,808,553	+		HER17_RS16930	0.27	-0.6
3,808,553	+		HER17_RS16930	0.27	+0.4
3,808,554	-		HER17_RS16930	0.27	+0.4
3,808,588	+		HER17_RS16930	0.32	+1.0
3,808,614	-		HER17_RS16930	0.35	+2.8
3,808,685	+		HER17_RS16930	0.45	+1.7
3,808,686	-		HER17_RS16930	0.45	+0.5
3,808,721	+		HER17_RS16930	0.49	-2.1
3,808,721	+		HER17_RS16930	0.49	-0.3
3,808,722	-		HER17_RS16930	0.50	+0.7
3,808,727	-		HER17_RS16930	0.50	-0.4
3,808,729	+		HER17_RS16930	0.51	-0.0
3,808,730	-		HER17_RS16930	0.51	-0.3
3,808,730	-		HER17_RS16930	0.51	-0.1
3,808,755	-		HER17_RS16930	0.54	+0.1
3,808,755	-		HER17_RS16930	0.54	-1.3
3,808,781	-		HER17_RS16930	0.57	-0.1
3,808,866	+		HER17_RS16930	0.69	-0.5
3,808,869	+		HER17_RS16930	0.69	-0.1
3,808,869	+		HER17_RS16930	0.69	-0.4
3,808,869	+		HER17_RS16930	0.69	+0.6
3,808,869	+		HER17_RS16930	0.69	-0.3
3,808,870	-		HER17_RS16930	0.69	+1.1
3,808,870	-		HER17_RS16930	0.69	+3.3
3,809,010	+		HER17_RS16930	0.88	-1.3
3,809,010	+		HER17_RS16930	0.88	-0.9
3,809,011	-		HER17_RS16930	0.88	+0.8
3,809,011	-		HER17_RS16930	0.88	+0.3
3,809,011	-		HER17_RS16930	0.88	+0.0
3,809,016	+		HER17_RS16930	0.89	+1.5
3,809,017	-		HER17_RS16930	0.89	+0.4
3,809,019	+		HER17_RS16930	0.89	-2.1
3,809,019	+		HER17_RS16930	0.89	-0.1
3,809,020	-		HER17_RS16930	0.89	+0.3
3,809,020	-		HER17_RS16930	0.89	-1.9
3,809,057	+				+2.0
3,809,093	+				-0.6
3,809,094	-				-0.0
3,809,098	-				+1.8
3,809,098	-				+1.3
3,809,098	-				-0.6
3,809,102	+				-0.2
3,809,102	+				-0.3
3,809,102	+				+3.3
3,809,103	-				+3.5
3,809,247	-		HER17_RS16935	0.13	-0.0
3,809,318	+		HER17_RS16935	0.19	-0.0
3,809,319	-		HER17_RS16935	0.20	+1.7
3,809,347	+		HER17_RS16935	0.22	-0.9
3,809,347	+		HER17_RS16935	0.22	-0.9
3,809,379	-		HER17_RS16935	0.25	-1.0
3,809,379	-		HER17_RS16935	0.25	+0.6
3,809,384	+		HER17_RS16935	0.26	-1.6
3,809,438	+		HER17_RS16935	0.31	-1.4
3,809,438	+		HER17_RS16935	0.31	-1.0
3,809,438	+		HER17_RS16935	0.31	-1.1
3,809,439	-		HER17_RS16935	0.31	-0.1
3,809,439	-		HER17_RS16935	0.31	-0.4
3,809,439	-		HER17_RS16935	0.31	+1.0
3,809,439	-		HER17_RS16935	0.31	+1.1
3,809,439	-		HER17_RS16935	0.31	-0.8
3,809,440	+		HER17_RS16935	0.31	-0.4
3,809,464	+		HER17_RS16935	0.34	-1.0
3,809,464	+		HER17_RS16935	0.34	-1.8
3,809,465	-		HER17_RS16935	0.34	-0.1
3,809,493	+		HER17_RS16935	0.36	-1.4
3,809,494	-		HER17_RS16935	0.36	-1.0
3,809,687	+		HER17_RS16935	0.55	-0.9
3,809,688	-		HER17_RS16935	0.55	+1.1
3,809,688	-		HER17_RS16935	0.55	-1.1
3,809,688	-		HER17_RS16935	0.55	-0.6
3,809,688	-		HER17_RS16935	0.55	+0.3
3,809,688	-		HER17_RS16935	0.55	-1.1
3,809,694	+		HER17_RS16935	0.56	-0.1
3,809,694	+		HER17_RS16935	0.56	+0.1
3,809,725	+		HER17_RS16935	0.59	-1.3
3,809,725	+		HER17_RS16935	0.59	+0.9
3,809,725	+		HER17_RS16935	0.59	+1.2
3,809,726	-		HER17_RS16935	0.59	-0.0
3,809,726	-		HER17_RS16935	0.59	+1.0
3,809,765	+		HER17_RS16935	0.63	-1.1
3,809,765	+		HER17_RS16935	0.63	-0.6
3,809,765	+		HER17_RS16935	0.63	-1.7
3,809,765	+		HER17_RS16935	0.63	-0.6
3,809,765	+		HER17_RS16935	0.63	+1.1
3,809,765	+		HER17_RS16935	0.63	+0.7
3,809,766	-		HER17_RS16935	0.63	+0.4
3,809,766	-		HER17_RS16935	0.63	+0.1
3,809,766	-		HER17_RS16935	0.63	+0.4
3,809,766	-		HER17_RS16935	0.63	+0.7
3,809,766	-		HER17_RS16935	0.63	+1.6
3,809,766	-		HER17_RS16935	0.63	-0.3
3,809,766	-		HER17_RS16935	0.63	+0.4
3,809,766	-		HER17_RS16935	0.63	+0.4
3,809,766	-		HER17_RS16935	0.63	+1.4
3,809,980	+		HER17_RS16935	0.83	+2.4
3,809,980	+		HER17_RS16935	0.83	+0.2
3,809,995	+		HER17_RS16935	0.85	+2.0
3,810,083	+				-1.4
3,810,084	-				+1.1