Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15865

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
3,564,020	-				+0.8
3,564,124	+				+2.9
3,564,128	+				+1.5
3,564,128	+				-1.3
3,564,129	-				-2.0
3,564,129	-				-0.3
3,564,214	+				-0.7
3,564,216	+				+1.5
3,564,217	-				-1.5
3,564,224	+				-0.5
3,564,224	+				-1.7
3,564,224	+				-1.8
3,564,225	-				+0.6
3,564,256	+				-1.3
3,564,259	+				+0.3
3,564,259	+				-1.5
3,564,259	+				-1.5
3,564,260	-				-1.3
3,564,260	-				-1.3
3,564,284	+				-1.9
3,564,288	-				+1.1
3,564,288	-				+0.3
3,564,300	+				-0.4
3,564,321	+				+0.5
3,564,322	-				-0.9
3,564,322	-				-0.6
3,564,322	-				+1.7
3,564,329	+				-0.9
3,564,408	-		HER17_RS15860	0.25	-1.0
3,564,408	-		HER17_RS15860	0.25	-1.6
3,564,408	-		HER17_RS15860	0.25	+0.7
3,564,411	+		HER17_RS15860	0.26	-0.3
3,564,411	+		HER17_RS15860	0.26	-0.3
3,564,411	+		HER17_RS15860	0.26	-1.2
3,564,411	+		HER17_RS15860	0.26	+0.5
3,564,412	-		HER17_RS15860	0.27	+0.1
3,564,412	-		HER17_RS15860	0.27	-0.4
3,564,412	-		HER17_RS15860	0.27	-0.0
3,564,412	-		HER17_RS15860	0.27	-0.1
3,564,412	-		HER17_RS15860	0.27	-0.8
3,564,412	-		HER17_RS15860	0.27	+0.9
3,564,412	-		HER17_RS15860	0.27	+0.1
3,564,412	-		HER17_RS15860	0.27	-0.7
3,564,415	+		HER17_RS15860	0.28	-0.7
3,564,415	+		HER17_RS15860	0.28	+0.3
3,564,415	+		HER17_RS15860	0.28	+0.3
3,564,415	+		HER17_RS15860	0.28	-0.3
3,564,415	+		HER17_RS15860	0.28	-1.3
3,564,415	+		HER17_RS15860	0.28	-1.9
3,564,415	+		HER17_RS15860	0.28	-0.5
3,564,415	+		HER17_RS15860	0.28	-1.6
3,564,416	-		HER17_RS15860	0.28	-0.1
3,564,416	-		HER17_RS15860	0.28	+0.1
3,564,416	-		HER17_RS15860	0.28	+1.3
3,564,416	-		HER17_RS15860	0.28	+0.6
3,564,416	-		HER17_RS15860	0.28	-0.5
3,564,421	+		HER17_RS15860	0.30	+0.6
3,564,464	+		HER17_RS15860	0.43	-0.1
3,564,465	-		HER17_RS15860	0.43	-0.1
3,564,508	-		HER17_RS15860	0.57	+0.1
3,564,528	+		HER17_RS15860	0.63	-1.7
3,564,567	-		HER17_RS15860	0.76	+0.1
3,564,567	-		HER17_RS15860	0.76	+1.0
3,564,567	-		HER17_RS15860	0.76	-0.1
3,564,586	+		HER17_RS15860	0.82	-2.0
3,564,586	+		HER17_RS15860	0.82	+4.3
3,564,587	-		HER17_RS15860	0.82	-1.2
3,564,587	-		HER17_RS15860	0.82	-1.2
3,564,675	+				+0.0
3,564,710	+				+0.9
3,564,711	-				+0.6
3,564,730	+				-0.8
3,564,730	+				+0.3
3,564,730	+				-0.0
3,564,731	-				-0.9
3,564,731	-				+1.5
3,564,736	+				-0.7
3,564,804	+				+1.2
3,564,804	+				+0.9
3,564,804	+				+2.5
3,564,804	+				+1.1
3,564,805	-				+2.9
3,564,805	-				-1.0
3,564,805	-				-1.0
3,564,805	-				-0.7
3,564,806	+				-0.7
3,564,829	+				-0.5
3,564,830	-				-1.0
3,564,883	+				+0.5
3,564,883	+				+0.0
3,564,884	-				+0.1
3,564,884	-				+0.5
3,564,921	+				+2.3
3,564,921	+				-1.0
3,564,921	+				+0.8
3,564,921	+				+0.9
3,564,921	+				+0.7
3,564,922	-				+0.7
3,564,922	-				-0.7
3,564,926	+				-0.9
3,564,926	+				+1.3
3,564,935	+				-1.0
3,564,935	+				+1.2
3,564,935	+				+0.3
3,564,936	-				+2.5
3,564,936	-				-0.7
3,564,956	-				+0.3
3,564,974	-				-2.0
3,564,974	-				-1.6
3,565,112	+		HER17_RS15865	0.23	-0.4
3,565,113	-		HER17_RS15865	0.23	-0.3
3,565,115	+		HER17_RS15865	0.24	+1.8
3,565,115	+		HER17_RS15865	0.24	-1.1
3,565,116	-		HER17_RS15865	0.24	+1.7
3,565,116	-		HER17_RS15865	0.24	+0.9
3,565,254	+		HER17_RS15865	0.48	-0.0
3,565,254	+		HER17_RS15865	0.48	+1.3
3,565,254	+		HER17_RS15865	0.48	+1.1
3,565,394	+		HER17_RS15865	0.72	+0.9
3,565,410	+		HER17_RS15865	0.75	-0.0
3,565,411	-		HER17_RS15865	0.75	-0.9
3,565,422	+		HER17_RS15865	0.77	+2.0
3,565,422	+		HER17_RS15865	0.77	+0.7
3,565,422	+		HER17_RS15865	0.77	+0.6
3,565,422	+		HER17_RS15865	0.77	+0.3
3,565,423	-		HER17_RS15865	0.77	-1.3
3,565,463	+		HER17_RS15865	0.84	-1.0
3,565,525	+				+0.6
3,565,525	+				-1.8
3,565,525	+				-1.3
3,565,526	-				-1.5
3,565,529	+				-0.7
3,565,529	+				+0.4
3,565,529	+				-1.5
3,565,530	-				-0.2
3,565,530	-				+2.3
3,565,621	+				-2.2
3,565,622	-				+2.9
3,565,651	+				-1.0
3,565,652	-				-0.8
3,565,652	-				+2.9
3,565,652	-				-0.0
3,565,663	+				-0.2
3,565,663	+				+2.3
3,565,664	-				-0.3
3,565,664	-				+1.4
3,565,664	-				-0.6
3,565,692	+				+1.1
3,565,790	+		HER17_RS15870	0.12	+0.3
3,565,794	+		HER17_RS15870	0.12	-1.0
3,565,794	+		HER17_RS15870	0.12	-0.0
3,565,794	+		HER17_RS15870	0.12	-2.0
3,565,794	+		HER17_RS15870	0.12	-1.9
3,565,794	+		HER17_RS15870	0.12	+1.3
3,565,795	-		HER17_RS15870	0.12	-0.0
3,565,795	-		HER17_RS15870	0.12	-0.3
3,565,916	-		HER17_RS15870	0.20	+2.6
3,565,916	-		HER17_RS15870	0.20	-1.0
3,566,006	+		HER17_RS15870	0.26	-0.9
3,566,007	-		HER17_RS15870	0.26	-1.3
3,566,007	-		HER17_RS15870	0.26	-0.3
3,566,007	-		HER17_RS15870	0.26	+0.5
3,566,007	-		HER17_RS15870	0.26	+0.9
3,566,009	-		HER17_RS15870	0.26	+1.6
3,566,064	+		HER17_RS15870	0.30	+0.4
3,566,064	+		HER17_RS15870	0.30	-2.6
3,566,064	+		HER17_RS15870	0.30	+1.6
3,566,065	-		HER17_RS15870	0.30	-1.5
3,566,065	-		HER17_RS15870	0.30	+3.3
3,566,065	-		HER17_RS15870	0.30	+1.5
3,566,065	-		HER17_RS15870	0.30	-0.5
3,566,065	-		HER17_RS15870	0.30	+0.9
3,566,123	+		HER17_RS15870	0.34	-0.1
3,566,144	+		HER17_RS15870	0.35	-2.3
3,566,144	+		HER17_RS15870	0.35	+0.6
3,566,144	+		HER17_RS15870	0.35	-1.6
3,566,144	+		HER17_RS15870	0.35	+0.7
3,566,145	-		HER17_RS15870	0.36	+0.1
3,566,194	-		HER17_RS15870	0.39	-1.5
3,566,306	-		HER17_RS15870	0.46	-1.3
3,566,315	+		HER17_RS15870	0.47	+1.3
3,566,315	+		HER17_RS15870	0.47	+0.8
3,566,315	+		HER17_RS15870	0.47	-1.6
3,566,315	+		HER17_RS15870	0.47	-0.3
3,566,315	+		HER17_RS15870	0.47	-0.6
3,566,315	+		HER17_RS15870	0.47	-1.9
3,566,315	+		HER17_RS15870	0.47	+0.1
3,566,316	-		HER17_RS15870	0.47	+0.7
3,566,316	-		HER17_RS15870	0.47	+1.7
3,566,316	-		HER17_RS15870	0.47	+3.6
3,566,407	+		HER17_RS15870	0.53	+1.4
3,566,407	+		HER17_RS15870	0.53	-1.4
3,566,408	-		HER17_RS15870	0.53	-0.6
3,566,408	-		HER17_RS15870	0.53	-0.7