Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15625

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
3,506,458	+		HER17_RS15615	0.20	+0.0
3,506,458	+		HER17_RS15615	0.20	+2.1
3,506,458	+		HER17_RS15615	0.20	+1.4
3,506,477	+		HER17_RS15615	0.25	+0.7
3,506,498	+		HER17_RS15615	0.29	+0.8
3,506,502	-		HER17_RS15615	0.30	-0.1
3,506,573	+		HER17_RS15615	0.46	+5.5
3,506,573	+		HER17_RS15615	0.46	-0.6
3,506,574	-		HER17_RS15615	0.46	-1.7
3,506,574	-		HER17_RS15615	0.46	+2.0
3,506,665	-		HER17_RS15615	0.66	-0.4
3,506,819	-				+1.5
3,506,822	+				+1.0
3,506,822	+				-2.1
3,506,822	+				+0.0
3,506,823	-				+1.1
3,506,823	-				-0.6
3,506,823	-				-1.7
3,506,823	-				+0.1
3,506,823	-				-0.1
3,506,830	+				-1.0
3,506,864	-				+0.5
3,506,878	+				+1.5
3,506,907	-				-0.3
3,507,039	+		HER17_RS15620	0.40	+0.9
3,507,068	+		HER17_RS15620	0.48	-2.1
3,507,069	-		HER17_RS15620	0.48	-1.1
3,507,077	+		HER17_RS15620	0.50	+0.3
3,507,163	+		HER17_RS15620	0.71	-0.6
3,507,163	+		HER17_RS15620	0.71	-0.3
3,507,198	-		HER17_RS15620	0.80	-2.1
3,507,220	+		HER17_RS15620	0.85	+0.8
3,507,220	+		HER17_RS15620	0.85	+1.3
3,507,220	+		HER17_RS15620	0.85	-1.2
3,507,220	+		HER17_RS15620	0.85	+1.6
3,507,240	-				+2.5
3,507,242	+				-0.3
3,507,242	+				-1.1
3,507,242	+				+0.7
3,507,243	-				+0.3
3,507,243	-				-0.5
3,507,243	-				+1.2
3,507,243	-				+2.2
3,507,272	+				+0.7
3,507,272	+				-1.2
3,507,273	-				+1.8
3,507,273	-				+1.8
3,507,305	+				-1.9
3,507,306	-				+3.0
3,507,319	+				-0.2
3,507,319	+				+0.7
3,507,320	-				-1.7
3,507,326	+				-1.0
3,507,326	+				+0.5
3,507,326	+				+0.3
3,507,326	+				+1.3
3,507,326	+				-1.5
3,507,327	-				-0.3
3,507,327	-				-0.3
3,507,327	-				+4.5
3,507,327	-				+0.9
3,507,327	-				+0.1
3,507,330	+				-2.1
3,507,330	+				-0.8
3,507,331	-				+2.9
3,507,331	-				+0.4
3,507,334	-				-0.1
3,507,334	-				+0.0
3,507,391	+				+0.3
3,507,392	-				+0.1
3,507,394	+				-0.2
3,507,394	+				-1.1
3,507,394	+				-0.3
3,507,395	-				-0.7
3,507,395	-				-1.6
3,507,395	-				-1.5
3,507,512	+				+1.0
3,507,512	+				-0.1
3,507,512	+				+0.3
3,507,559	+				-0.6
3,507,560	-				-1.2
3,507,560	-				+0.0
3,507,560	-				+2.3
3,507,658	+				+0.6
3,507,828	+		HER17_RS15625	0.16	-0.4
3,507,829	-		HER17_RS15625	0.16	-1.1
3,507,865	+		HER17_RS15625	0.17	+2.1
3,507,912	+		HER17_RS15625	0.19	+0.2
3,508,086	-		HER17_RS15625	0.25	-0.1
3,508,280	-		HER17_RS15625	0.32	-0.7
3,508,463	+		HER17_RS15625	0.39	+1.0
3,508,464	-		HER17_RS15625	0.39	-0.1
3,508,464	-		HER17_RS15625	0.39	-1.9
3,508,464	-		HER17_RS15625	0.39	-2.4
3,508,494	+		HER17_RS15625	0.40	+0.3
3,508,495	-		HER17_RS15625	0.40	-0.5
3,508,495	-		HER17_RS15625	0.40	-1.3
3,508,593	+		HER17_RS15625	0.44	+0.3
3,508,650	+		HER17_RS15625	0.46	-1.0
3,508,650	+		HER17_RS15625	0.46	+0.3
3,508,672	+		HER17_RS15625	0.47	+0.4
3,508,672	+		HER17_RS15625	0.47	+2.5
3,508,852	+		HER17_RS15625	0.53	-0.9
3,509,172	+		HER17_RS15625	0.65	-0.3
3,509,227	+		HER17_RS15625	0.67	+0.5
3,509,573	-		HER17_RS15625	0.80	-0.7
3,509,957	-				+3.8
3,509,960	+				-0.0
3,509,960	+				+6.3
3,509,960	+				+0.5
3,509,961	-				+0.4
3,509,962	+				-0.7
3,509,994	+				-0.1
3,509,995	-				+0.3
3,509,995	-				-0.7
3,509,995	-				-0.3
3,510,018	+				+0.9
3,510,018	+				+0.3
3,510,019	-				-0.2
3,510,019	-				-0.7
3,510,019	-				+1.4
3,510,023	-				-1.0
3,510,023	-				-1.3
3,510,130	+				+7.9
3,510,131	-				-1.2
3,510,200	+				+0.3
3,510,200	+				-0.7
3,510,200	+				-0.5
3,510,200	+				+0.0
3,510,200	+				+1.3
3,510,201	-				-0.3
3,510,201	-				-1.6
3,510,201	-				-0.2
3,510,201	-				-0.3
3,510,201	-				+0.9
3,510,201	-				+0.4
3,510,201	-				+1.3
3,510,230	+				-0.5
3,510,230	+				-1.3
3,510,231	-				-1.1
3,510,231	-				-0.1
3,510,231	-				-0.5
3,510,238	-				+0.6
3,510,238	-				-0.3
3,510,252	-				-0.5
3,510,252	-				+0.0
3,510,258	+				-1.3
3,510,258	+				+3.1
3,510,258	+				+0.9
3,510,259	-				-1.3
3,510,263	+				+3.1
3,510,263	+				+1.3
3,510,263	+				+0.7
3,510,264	-				-0.3
3,510,267	+				+0.1
3,510,268	-				+0.3
3,510,268	-				-0.1
3,510,333	+				-0.1
3,510,334	-				-1.1
3,510,334	-				+1.3
3,510,334	-				-0.3
3,510,350	-				-0.1
3,510,365	+				+0.3
3,510,365	+				-0.8
3,510,366	-				+1.5
3,510,366	-				-0.5
3,510,366	-				+1.6
3,510,366	-				+1.0
3,510,366	-				+2.0
3,510,366	-				+1.1
3,510,366	-				-0.1
3,510,411	+		HER17_RS15630	0.15	-0.8
3,510,411	+		HER17_RS15630	0.15	+0.3
3,510,503	+		HER17_RS15630	0.26	-1.2
3,510,504	-		HER17_RS15630	0.26	+0.5
3,510,555	-		HER17_RS15630	0.32	+1.3
3,510,555	-		HER17_RS15630	0.32	+0.9
3,510,627	+		HER17_RS15630	0.41	-1.1
3,510,665	+		HER17_RS15630	0.46	+0.5
3,510,666	-		HER17_RS15630	0.46	-0.3
3,510,666	-		HER17_RS15630	0.46	+0.9
3,510,666	-		HER17_RS15630	0.46	-2.0
3,510,666	-		HER17_RS15630	0.46	+1.3
3,510,695	+		HER17_RS15630	0.49	+0.7
3,510,725	+		HER17_RS15630	0.53	+2.0
3,510,726	-		HER17_RS15630	0.53	-2.3
3,510,751	-		HER17_RS15630	0.56	+1.7
3,510,806	+		HER17_RS15630	0.63	+2.3
3,510,807	-		HER17_RS15630	0.63	+1.5
3,510,837	+		HER17_RS15630	0.67	-0.7
3,510,916	+		HER17_RS15630	0.76	+0.6
3,510,916	+		HER17_RS15630	0.76	-0.5
3,510,917	-		HER17_RS15630	0.76	+1.0
3,510,917	-		HER17_RS15630	0.76	-0.1
3,510,919	-		HER17_RS15630	0.77	+0.5
3,510,919	-		HER17_RS15630	0.77	-1.0
3,510,978	+		HER17_RS15630	0.84	-0.3
3,510,979	-		HER17_RS15630	0.84	-1.3
3,511,024	+		HER17_RS15630	0.89	-1.5
3,511,024	+		HER17_RS15630	0.89	+3.2
3,511,055	-				+0.7