Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS10110

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
2,231,825	+				-2.0
2,231,825	+				+1.0
2,231,829	-				-2.0
2,231,829	-				+0.8
2,231,829	-				+1.2
2,231,829	-				-1.7
2,231,831	+				-1.5
2,231,831	+				-0.5
2,231,942	+				-0.4
2,231,978	+				+0.4
2,231,978	+				-0.4
2,231,979	-				+0.1
2,232,005	+				-1.5
2,232,005	+				-0.1
2,232,010	+				-0.8
2,232,011	-				+0.8
2,232,011	-				+0.7
2,232,011	-				-0.8
2,232,011	-				-0.8
2,232,023	-				+0.6
2,232,080	+				-3.1
2,232,101	+		HER17_RS10105	0.11	+0.6
2,232,101	+		HER17_RS10105	0.11	+0.1
2,232,180	+		HER17_RS10105	0.21	+0.8
2,232,180	+		HER17_RS10105	0.21	+0.8
2,232,180	+		HER17_RS10105	0.21	-0.4
2,232,183	+		HER17_RS10105	0.22	+1.5
2,232,183	+		HER17_RS10105	0.22	-0.4
2,232,183	+		HER17_RS10105	0.22	+3.2
2,232,183	+		HER17_RS10105	0.22	+3.7
2,232,184	-		HER17_RS10105	0.22	-0.2
2,232,184	-		HER17_RS10105	0.22	-0.8
2,232,184	-		HER17_RS10105	0.22	-0.2
2,232,187	+		HER17_RS10105	0.22	+0.8
2,232,187	+		HER17_RS10105	0.22	-0.0
2,232,187	+		HER17_RS10105	0.22	-0.8
2,232,291	+		HER17_RS10105	0.35	-0.4
2,232,436	+		HER17_RS10105	0.53	-2.2
2,232,472	-		HER17_RS10105	0.58	+4.7
2,232,516	+		HER17_RS10105	0.63	-0.2
2,232,516	+		HER17_RS10105	0.63	+1.0
2,232,516	+		HER17_RS10105	0.63	+4.4
2,232,517	-		HER17_RS10105	0.63	-0.1
2,232,517	-		HER17_RS10105	0.63	-1.2
2,232,517	-		HER17_RS10105	0.63	+0.4
2,232,518	+		HER17_RS10105	0.64	+0.5
2,232,518	+		HER17_RS10105	0.64	+5.9
2,232,518	+		HER17_RS10105	0.64	+0.2
2,232,519	-		HER17_RS10105	0.64	+0.3
2,232,519	-		HER17_RS10105	0.64	-1.0
2,232,519	-		HER17_RS10105	0.64	-0.5
2,232,539	+		HER17_RS10105	0.66	-1.1
2,232,539	+		HER17_RS10105	0.66	+2.4
2,232,539	+		HER17_RS10105	0.66	-2.4
2,232,540	-		HER17_RS10105	0.66	-0.2
2,232,619	-		HER17_RS10105	0.76	+0.5
2,232,784	+				-0.5
2,232,785	-				+2.0
2,232,785	-				-0.2
2,232,785	-				-1.4
2,232,795	+				+2.9
2,232,795	+				+1.4
2,232,796	-				+0.4
2,232,802	+				-0.1
2,233,068	+		HER17_RS10110	0.13	-1.3
2,233,068	+		HER17_RS10110	0.13	+3.5
2,233,068	+		HER17_RS10110	0.13	-0.2
2,233,068	+		HER17_RS10110	0.13	-1.8
2,233,069	-		HER17_RS10110	0.13	-0.2
2,233,069	-		HER17_RS10110	0.13	+0.5
2,233,081	+		HER17_RS10110	0.14	-0.7
2,233,082	-		HER17_RS10110	0.14	+0.8
2,233,125	+		HER17_RS10110	0.16	+1.0
2,233,125	+		HER17_RS10110	0.16	+0.3
2,233,125	+		HER17_RS10110	0.16	-1.2
2,233,125	+		HER17_RS10110	0.16	+1.4
2,233,126	-		HER17_RS10110	0.16	-1.4
2,233,126	-		HER17_RS10110	0.16	-1.4
2,233,126	-		HER17_RS10110	0.16	+1.1
2,233,126	-		HER17_RS10110	0.16	-0.8
2,233,126	-		HER17_RS10110	0.16	+0.3
2,233,128	+		HER17_RS10110	0.16	+3.6
2,233,129	-		HER17_RS10110	0.16	+0.3
2,233,222	-		HER17_RS10110	0.21	-1.0
2,233,235	-		HER17_RS10110	0.21	-0.0
2,233,312	+		HER17_RS10110	0.25	-0.4
2,233,312	+		HER17_RS10110	0.25	+0.1
2,233,312	+		HER17_RS10110	0.25	+0.8
2,233,313	-		HER17_RS10110	0.25	+0.3
2,233,313	-		HER17_RS10110	0.25	-0.2
2,233,313	-		HER17_RS10110	0.25	+0.4
2,233,313	-		HER17_RS10110	0.25	+1.2
2,233,449	+		HER17_RS10110	0.32	-2.6
2,233,450	-		HER17_RS10110	0.32	+1.3
2,233,450	-		HER17_RS10110	0.32	+0.1
2,233,469	-		HER17_RS10110	0.33	-1.2
2,233,477	+		HER17_RS10110	0.34	+1.8
2,233,509	+		HER17_RS10110	0.35	-0.8
2,233,509	+		HER17_RS10110	0.35	+0.3
2,233,509	+		HER17_RS10110	0.35	-1.2
2,233,509	+		HER17_RS10110	0.35	-0.5
2,233,510	-		HER17_RS10110	0.35	+0.4
2,233,510	-		HER17_RS10110	0.35	-0.8
2,233,510	-		HER17_RS10110	0.35	-1.4
2,233,510	-		HER17_RS10110	0.35	-0.3
2,233,513	+		HER17_RS10110	0.35	-2.0
2,233,513	+		HER17_RS10110	0.35	-0.2
2,233,513	+		HER17_RS10110	0.35	+1.8
2,233,513	+		HER17_RS10110	0.35	+0.6
2,233,513	+		HER17_RS10110	0.35	+1.2
2,233,513	+		HER17_RS10110	0.35	-2.5
2,233,514	-		HER17_RS10110	0.35	-0.2
2,233,514	-		HER17_RS10110	0.35	+0.1
2,233,514	-		HER17_RS10110	0.35	+0.2
2,233,514	-		HER17_RS10110	0.35	-0.4
2,233,514	-		HER17_RS10110	0.35	-1.2
2,233,514	-		HER17_RS10110	0.35	-0.4
2,233,514	-		HER17_RS10110	0.35	-1.5
2,233,567	+		HER17_RS10110	0.38	-0.9
2,233,567	+		HER17_RS10110	0.38	-0.8
2,233,581	+		HER17_RS10110	0.39	+3.1
2,233,582	-		HER17_RS10110	0.39	+0.8
2,233,629	+		HER17_RS10110	0.41	-1.2
2,233,629	+		HER17_RS10110	0.41	+3.5
2,233,630	-		HER17_RS10110	0.41	+1.4
2,233,634	+		HER17_RS10110	0.41	-1.2
2,233,634	+		HER17_RS10110	0.41	-1.4
2,233,634	+		HER17_RS10110	0.41	+1.8
2,233,634	+		HER17_RS10110	0.41	+0.0
2,233,670	+		HER17_RS10110	0.43	-1.0
2,233,671	-		HER17_RS10110	0.43	+0.2
2,233,671	-		HER17_RS10110	0.43	+0.8
2,233,700	+		HER17_RS10110	0.45	-1.2
2,233,700	+		HER17_RS10110	0.45	-1.1
2,233,700	+		HER17_RS10110	0.45	-1.1
2,233,701	-		HER17_RS10110	0.45	-0.2
2,233,719	+		HER17_RS10110	0.46	-0.6
2,233,719	+		HER17_RS10110	0.46	+2.8
2,233,845	+		HER17_RS10110	0.52	-0.2
2,233,889	+		HER17_RS10110	0.54	+1.1
2,233,889	+		HER17_RS10110	0.54	-1.6
2,233,889	+		HER17_RS10110	0.54	+0.3
2,233,889	+		HER17_RS10110	0.54	+3.6
2,233,889	+		HER17_RS10110	0.54	+1.7
2,233,889	+		HER17_RS10110	0.54	-0.8
2,233,890	-		HER17_RS10110	0.54	+4.8
2,233,890	-		HER17_RS10110	0.54	+1.2
2,233,890	-		HER17_RS10110	0.54	-2.2
2,233,894	-		HER17_RS10110	0.54	+0.2
2,233,934	-		HER17_RS10110	0.56	-0.0
2,234,010	-		HER17_RS10110	0.60	-0.4
2,234,010	-		HER17_RS10110	0.60	-0.2
2,234,010	-		HER17_RS10110	0.60	+1.1
2,234,197	-		HER17_RS10110	0.70	-1.2
2,234,254	-		HER17_RS10110	0.72	+4.0
2,234,260	+		HER17_RS10110	0.73	+0.4
2,234,261	-		HER17_RS10110	0.73	-0.6
2,234,413	+		HER17_RS10110	0.80	-0.8
2,234,452	+		HER17_RS10110	0.82	-0.2
2,234,453	-		HER17_RS10110	0.82	+1.3
2,234,468	+		HER17_RS10110	0.83	-0.8
2,234,468	+		HER17_RS10110	0.83	+0.8
2,234,468	+		HER17_RS10110	0.83	-0.6
2,234,468	+		HER17_RS10110	0.83	-0.7
2,234,468	+		HER17_RS10110	0.83	+1.0
2,234,468	+		HER17_RS10110	0.83	-0.8
2,234,468	+		HER17_RS10110	0.83	+3.1
2,234,469	-		HER17_RS10110	0.83	+0.2
2,234,469	-		HER17_RS10110	0.83	-0.8
2,234,472	+		HER17_RS10110	0.83	+0.1
2,234,472	+		HER17_RS10110	0.83	+1.5
2,234,472	+		HER17_RS10110	0.83	+0.1
2,234,472	+		HER17_RS10110	0.83	-0.2
2,234,472	+		HER17_RS10110	0.83	+0.3
2,234,473	-		HER17_RS10110	0.83	+0.4
2,234,473	-		HER17_RS10110	0.83	-1.1
2,234,473	-		HER17_RS10110	0.83	-0.9
2,234,473	-		HER17_RS10110	0.83	-1.2
2,234,689	+				+0.8
2,234,689	+				+0.4
2,234,690	-				-1.2
2,234,808	-				-1.1
2,234,822	-				-0.2
2,234,909	+		HER17_RS10115	0.15	-3.6
2,234,909	+		HER17_RS10115	0.15	-3.1
2,234,909	+		HER17_RS10115	0.15	-2.0
2,234,943	+		HER17_RS10115	0.20	-1.2
2,234,943	+		HER17_RS10115	0.20	-3.3
2,234,944	-		HER17_RS10115	0.20	-1.5
2,234,944	-		HER17_RS10115	0.20	-2.2
2,234,944	-		HER17_RS10115	0.20	-2.5
2,234,963	-		HER17_RS10115	0.23	-2.0
2,234,987	+		HER17_RS10115	0.26	-1.8
2,234,987	+		HER17_RS10115	0.26	-1.6
2,234,987	+		HER17_RS10115	0.26	-0.8
2,234,987	+		HER17_RS10115	0.26	-1.4
2,234,988	-		HER17_RS10115	0.27	+1.8
2,234,988	-		HER17_RS10115	0.27	-1.2
2,234,988	-		HER17_RS10115	0.27	-0.2
2,234,988	-		HER17_RS10115	0.27	-0.8
2,235,004	-		HER17_RS10115	0.29	-2.0
2,235,009	+		HER17_RS10115	0.30	-2.2
2,235,010	-		HER17_RS10115	0.30	-1.5
2,235,010	-		HER17_RS10115	0.30	-3.2
2,235,012	-		HER17_RS10115	0.30	-1.5
2,235,030	+		HER17_RS10115	0.33	-0.6
2,235,052	+		HER17_RS10115	0.36	-0.8
2,235,108	+		HER17_RS10115	0.44	-1.8
2,235,109	-		HER17_RS10115	0.44	-0.8
2,235,109	-		HER17_RS10115	0.44	-1.2
2,235,207	-		HER17_RS10115	0.58	-2.0
2,235,241	-		HER17_RS10115	0.63	+0.8
2,235,241	-		HER17_RS10115	0.63	-1.2
2,235,243	+		HER17_RS10115	0.63	-1.8
2,235,243	+		HER17_RS10115	0.63	-0.9
2,235,333	+		HER17_RS10115	0.76	-2.6
2,235,334	-		HER17_RS10115	0.76	+0.8
2,235,390	+		HER17_RS10115	0.84	-0.2
2,235,404	+		HER17_RS10115	0.86	-4.3
2,235,405	-		HER17_RS10115	0.86	-1.2
2,235,405	-		HER17_RS10115	0.86	-1.2
2,235,417	-		HER17_RS10115	0.88	-0.5
2,235,464	+				-1.4
2,235,508	+				-1.4
2,235,508	+				+0.4
2,235,542	+				+1.8
2,235,646	-		HER17_RS10120	0.40	+0.8
2,235,800	-				-0.0