Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS07570

Experiment: Tuber-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS07565 and HER17_RS07570 are separated by 1 nucleotidesHER17_RS07570 and HER17_RS07575 overlap by 1 nucleotides HER17_RS07565: HER17_RS07565 - site-specific integrase, at 1,681,708 to 1,682,913 _RS07565 HER17_RS07570: HER17_RS07570 - site-specific integrase, at 1,682,915 to 1,684,225 _RS07570 HER17_RS07575: HER17_RS07575 - DNA-binding protein, at 1,684,225 to 1,685,853 _RS07575 Position (kb) 1682 1683 1684 1685Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 1681.950 kb on + strand, within HER17_RS07565at 1681.973 kb on + strand, within HER17_RS07565at 1682.179 kb on - strand, within HER17_RS07565at 1682.745 kb on - strand, within HER17_RS07565at 1682.828 kb on - strandat 1683.089 kb on + strand, within HER17_RS07570at 1683.105 kb on - strand, within HER17_RS07570at 1683.193 kb on - strand, within HER17_RS07570at 1683.462 kb on + strand, within HER17_RS07570at 1683.464 kb on + strand, within HER17_RS07570at 1683.894 kb on + strand, within HER17_RS07570at 1683.928 kb on - strand, within HER17_RS07570at 1684.199 kb on - strandat 1684.419 kb on - strand, within HER17_RS07575at 1684.453 kb on - strand, within HER17_RS07575at 1684.839 kb on + strand, within HER17_RS07575at 1685.021 kb on + strand, within HER17_RS07575at 1685.222 kb on + strand, within HER17_RS07575at 1685.222 kb on + strand, within HER17_RS07575

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Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
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1,681,950 + HER17_RS07565 0.20 +1.0
1,681,973 + HER17_RS07565 0.22 -0.7
1,682,179 - HER17_RS07565 0.39 +0.4
1,682,745 - HER17_RS07565 0.86 +2.6
1,682,828 - +1.8
1,683,089 + HER17_RS07570 0.13 +0.4
1,683,105 - HER17_RS07570 0.14 -0.3
1,683,193 - HER17_RS07570 0.21 +1.7
1,683,462 + HER17_RS07570 0.42 +3.7
1,683,464 + HER17_RS07570 0.42 +1.5
1,683,894 + HER17_RS07570 0.75 +2.0
1,683,928 - HER17_RS07570 0.77 +6.4
1,684,199 - -0.3
1,684,419 - HER17_RS07575 0.12 +0.2
1,684,453 - HER17_RS07575 0.14 +2.6
1,684,839 + HER17_RS07575 0.38 -0.3
1,685,021 + HER17_RS07575 0.49 -0.7
1,685,222 + HER17_RS07575 0.61 +0.8
1,685,222 + HER17_RS07575 0.61 +0.4

Or see this region's nucleotide sequence