Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04430

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
1,007,854	-				-0.2
1,007,856	-				-2.1
1,007,877	-				+0.9
1,007,885	-				-0.8
1,007,885	-				-0.9
1,007,887	-				-1.2
1,007,887	-				+0.8
1,007,939	-				+2.2
1,007,939	-				-3.0
1,008,009	+				-1.6
1,008,009	+				+0.8
1,008,009	+				+1.4
1,008,009	+				-0.2
1,008,009	+				+0.4
1,008,009	+				-1.2
1,008,010	-				-0.3
1,008,010	-				+2.4
1,008,068	+				-2.4
1,008,068	+				-0.6
1,008,068	+				-0.6
1,008,069	-				-0.2
1,008,069	-				-2.5
1,008,074	+				-0.6
1,008,074	+				-0.3
1,008,175	-				+0.1
1,008,202	+				-0.6
1,008,221	+				+1.9
1,008,222	-				-1.6
1,008,351	+		HER17_RS04430	0.12	-0.6
1,008,389	-		HER17_RS04430	0.14	+1.1
1,008,411	+		HER17_RS04430	0.15	+0.0
1,008,411	+		HER17_RS04430	0.15	+2.2
1,008,411	+		HER17_RS04430	0.15	-1.4
1,008,420	+		HER17_RS04430	0.15	+3.2
1,008,420	+		HER17_RS04430	0.15	+0.1
1,008,420	+		HER17_RS04430	0.15	+0.0
1,008,420	+		HER17_RS04430	0.15	+1.1
1,008,421	-		HER17_RS04430	0.15	+0.3
1,008,421	-		HER17_RS04430	0.15	+0.1
1,008,502	+		HER17_RS04430	0.18	+0.9
1,008,502	+		HER17_RS04430	0.18	-0.2
1,008,503	-		HER17_RS04430	0.18	-0.3
1,008,503	-		HER17_RS04430	0.18	+0.1
1,008,503	-		HER17_RS04430	0.18	+7.4
1,008,599	+		HER17_RS04430	0.22	-0.4
1,008,600	-		HER17_RS04430	0.22	-0.9
1,008,750	+		HER17_RS04430	0.27	+2.2
1,008,751	-		HER17_RS04430	0.27	-0.3
1,008,809	-		HER17_RS04430	0.30	-0.7
1,008,809	-		HER17_RS04430	0.30	-0.4
1,008,870	-		HER17_RS04430	0.32	+0.6
1,008,966	+		HER17_RS04430	0.35	+1.2
1,008,967	-		HER17_RS04430	0.36	+0.2
1,008,985	-		HER17_RS04430	0.36	-1.4
1,009,050	+		HER17_RS04430	0.39	-0.7
1,009,051	-		HER17_RS04430	0.39	-0.9
1,009,051	-		HER17_RS04430	0.39	-0.0
1,009,052	+		HER17_RS04430	0.39	-0.4
1,009,052	+		HER17_RS04430	0.39	-1.4
1,009,052	+		HER17_RS04430	0.39	-0.1
1,009,052	+		HER17_RS04430	0.39	-0.2
1,009,052	+		HER17_RS04430	0.39	+1.1
1,009,053	-		HER17_RS04430	0.39	-2.2
1,009,053	-		HER17_RS04430	0.39	-0.7
1,009,078	+		HER17_RS04430	0.40	-1.9
1,009,087	+		HER17_RS04430	0.40	+2.1
1,009,105	+		HER17_RS04430	0.41	+0.7
1,009,106	-		HER17_RS04430	0.41	+0.4
1,009,106	-		HER17_RS04430	0.41	+1.1
1,009,178	+		HER17_RS04430	0.43	-0.9
1,009,194	+		HER17_RS04430	0.44	-0.7
1,009,194	+		HER17_RS04430	0.44	+2.8
1,009,195	-		HER17_RS04430	0.44	-0.6
1,009,326	-		HER17_RS04430	0.49	+2.6
1,009,340	-		HER17_RS04430	0.50	+1.4
1,009,340	-		HER17_RS04430	0.50	-2.4
1,009,340	-		HER17_RS04430	0.50	-1.2
1,009,357	+		HER17_RS04430	0.50	+2.3
1,009,358	-		HER17_RS04430	0.50	-1.7
1,009,363	+		HER17_RS04430	0.50	+2.6
1,009,363	+		HER17_RS04430	0.50	+0.5
1,009,363	+		HER17_RS04430	0.50	+2.1
1,009,363	+		HER17_RS04430	0.50	-1.4
1,009,363	+		HER17_RS04430	0.50	-2.4
1,009,363	+		HER17_RS04430	0.50	+0.4
1,009,363	+		HER17_RS04430	0.50	+1.8
1,009,363	+		HER17_RS04430	0.50	+0.2
1,009,363	+		HER17_RS04430	0.50	+0.1
1,009,363	+		HER17_RS04430	0.50	+0.9
1,009,363	+		HER17_RS04430	0.50	+0.3
1,009,363	+		HER17_RS04430	0.50	-1.3
1,009,363	+		HER17_RS04430	0.50	-0.8
1,009,363	+		HER17_RS04430	0.50	+0.3
1,009,363	+		HER17_RS04430	0.50	+1.3
1,009,364	-		HER17_RS04430	0.51	+1.0
1,009,364	-		HER17_RS04430	0.51	-1.3
1,009,364	-		HER17_RS04430	0.51	-0.9
1,009,364	-		HER17_RS04430	0.51	+0.7
1,009,364	-		HER17_RS04430	0.51	+4.0
1,009,364	-		HER17_RS04430	0.51	-0.0
1,009,364	-		HER17_RS04430	0.51	-0.2
1,009,364	-		HER17_RS04430	0.51	+1.0
1,009,396	-		HER17_RS04430	0.52	+2.0
1,009,405	+		HER17_RS04430	0.52	+1.4
1,009,406	-		HER17_RS04430	0.52	-1.9
1,009,406	-		HER17_RS04430	0.52	-1.9
1,009,475	-		HER17_RS04430	0.55	-0.1
1,009,475	-		HER17_RS04430	0.55	+1.1
1,009,568	+		HER17_RS04430	0.58	+0.4
1,009,598	+		HER17_RS04430	0.59	-3.0
1,009,695	-		HER17_RS04430	0.63	-0.5
1,009,695	-		HER17_RS04430	0.63	+1.8
1,009,832	+		HER17_RS04430	0.68	+1.4
1,009,864	+		HER17_RS04430	0.69	-0.2
1,009,865	-		HER17_RS04430	0.69	+0.4
1,009,880	+		HER17_RS04430	0.70	+0.3
1,009,881	-		HER17_RS04430	0.70	-1.2
1,009,963	+		HER17_RS04430	0.73	+0.3
1,010,099	+		HER17_RS04430	0.78	+0.4
1,010,148	+		HER17_RS04430	0.80	-0.9
1,010,239	+		HER17_RS04430	0.84	+0.1
1,010,299	+		HER17_RS04430	0.86	-2.2
1,010,302	+		HER17_RS04430	0.86	-1.2
1,010,303	-		HER17_RS04430	0.86	-1.7
1,010,345	+		HER17_RS04430	0.88	-0.6
1,010,446	+				+0.5
1,010,446	+				-0.5
1,010,447	-				+0.7
1,010,478	-				+0.2
1,010,523	+				-0.6
1,010,533	+				+0.1
1,010,633	-				+0.5
1,010,687	+				-0.9
1,010,708	+				+2.6
1,010,708	+				-0.4
1,010,783	+		HER17_RS04435	0.10	+0.8
1,010,784	-		HER17_RS04435	0.11	+0.0
1,010,784	-		HER17_RS04435	0.11	+0.8
1,010,784	-		HER17_RS04435	0.11	-0.2
1,010,932	+		HER17_RS04435	0.31	+0.0
1,010,932	+		HER17_RS04435	0.31	-2.4
1,010,932	+		HER17_RS04435	0.31	-0.6
1,010,933	-		HER17_RS04435	0.31	-0.2
1,010,933	-		HER17_RS04435	0.31	+0.4
1,010,967	-		HER17_RS04435	0.36	+0.6
1,010,976	+		HER17_RS04435	0.37	-1.5
1,010,989	-		HER17_RS04435	0.39	+1.9
1,010,989	-		HER17_RS04435	0.39	+0.4
1,011,017	-		HER17_RS04435	0.42	-0.1
1,011,026	-		HER17_RS04435	0.44	-2.7
1,011,026	-		HER17_RS04435	0.44	+0.4
1,011,105	-		HER17_RS04435	0.54	+0.3
1,011,105	-		HER17_RS04435	0.54	-0.1
1,011,250	+		HER17_RS04435	0.74	+1.0
1,011,319	+		HER17_RS04435	0.84	-0.2
1,011,337	+		HER17_RS04435	0.86	+0.2
1,011,337	+		HER17_RS04435	0.86	-1.2
1,011,337	+		HER17_RS04435	0.86	-1.7
1,011,338	-		HER17_RS04435	0.86	-0.4
1,011,338	-		HER17_RS04435	0.86	+0.4
1,011,338	-		HER17_RS04435	0.86	+1.1
1,011,340	+		HER17_RS04435	0.86	-1.0
1,011,461	+				+0.1
1,011,462	-				-0.6
1,011,462	-				-0.2
1,011,538	+				-0.5
1,011,566	+				-0.0
1,011,576	+				-0.1
1,011,576	+				-0.0
1,011,576	+				-1.3
1,011,577	-				+0.4
1,011,577	-				+0.1
1,011,579	+				+1.4
1,011,580	-				-1.6
1,011,580	-				+0.7
1,011,580	-				+1.4
1,011,580	-				-1.2
1,011,583	+				-0.6
1,011,583	+				+0.6
1,011,583	+				+1.4
1,011,584	-				-1.4
1,011,584	-				-1.2
1,011,584	-				+0.0
1,011,584	-				+0.0
1,011,591	+				-2.4
1,011,592	-				-0.2
1,011,592	-				-1.3
1,011,597	-				+1.0
1,011,604	+				+0.2
1,011,606	+				+2.6
1,011,606	+				+0.0