Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04115

Experiment: Tuber-Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS04110 and HER17_RS04115 are separated by 53 nucleotidesHER17_RS04115 and HER17_RS04120 are separated by 387 nucleotides HER17_RS04110: HER17_RS04110 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 933,934 to 935,283 _RS04110 HER17_RS04115: HER17_RS04115 - GTP diphosphokinase, at 935,337 to 937,571 _RS04115 HER17_RS04120: HER17_RS04120 - nucleoside triphosphate pyrophosphohydrolase, at 937,959 to 938,771 _RS04120 Position (kb) 935 936 937 938Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 934.339 kb on + strand, within HER17_RS04110at 934.339 kb on + strand, within HER17_RS04110at 934.339 kb on + strand, within HER17_RS04110at 934.340 kb on - strand, within HER17_RS04110at 934.340 kb on - strand, within HER17_RS04110at 934.340 kb on - strand, within HER17_RS04110at 934.340 kb on - strand, within HER17_RS04110at 934.370 kb on + strand, within HER17_RS04110at 934.371 kb on - strand, within HER17_RS04110at 934.371 kb on - strand, within HER17_RS04110at 934.371 kb on - strand, within HER17_RS04110at 934.372 kb on + strand, within HER17_RS04110at 934.373 kb on - strand, within HER17_RS04110at 934.658 kb on - strand, within HER17_RS04110at 934.692 kb on - strand, within HER17_RS04110at 934.755 kb on + strand, within HER17_RS04110at 934.831 kb on - strand, within HER17_RS04110at 934.835 kb on + strand, within HER17_RS04110at 934.835 kb on + strand, within HER17_RS04110at 934.836 kb on - strand, within HER17_RS04110at 934.839 kb on - strand, within HER17_RS04110at 934.907 kb on + strand, within HER17_RS04110at 934.907 kb on + strand, within HER17_RS04110at 934.908 kb on - strand, within HER17_RS04110at 934.908 kb on - strand, within HER17_RS04110at 934.925 kb on + strand, within HER17_RS04110at 935.040 kb on + strand, within HER17_RS04110at 935.041 kb on - strand, within HER17_RS04110at 935.045 kb on + strand, within HER17_RS04110at 935.046 kb on - strand, within HER17_RS04110at 935.046 kb on - strand, within HER17_RS04110at 935.046 kb on - strand, within HER17_RS04110at 935.046 kb on - strand, within HER17_RS04110at 935.048 kb on + strand, within HER17_RS04110at 935.048 kb on + strand, within HER17_RS04110at 935.048 kb on + strand, within HER17_RS04110at 935.049 kb on - strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.122 kb on + strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.123 kb on - strand, within HER17_RS04110at 935.165 kb on + strandat 935.166 kb on - strandat 935.166 kb on - strandat 935.168 kb on + strandat 935.211 kb on + strandat 935.211 kb on + strandat 935.211 kb on + strandat 935.284 kb on + strandat 935.284 kb on + strandat 935.285 kb on - strandat 935.285 kb on - strandat 935.326 kb on - strandat 935.326 kb on - strandat 935.337 kb on - strandat 935.366 kb on + strandat 935.457 kb on + strandat 935.498 kb on - strandat 935.870 kb on + strand, within HER17_RS04115at 935.876 kb on + strand, within HER17_RS04115at 935.876 kb on + strand, within HER17_RS04115at 935.877 kb on - strand, within HER17_RS04115at 935.880 kb on + strand, within HER17_RS04115at 935.880 kb on + strand, within HER17_RS04115at 935.881 kb on - strand, within HER17_RS04115at 935.881 kb on - strand, within HER17_RS04115at 935.902 kb on + strand, within HER17_RS04115at 935.903 kb on - strand, within HER17_RS04115at 935.917 kb on + strand, within HER17_RS04115at 935.917 kb on + strand, within HER17_RS04115at 935.918 kb on - strand, within HER17_RS04115at 935.918 kb on - strand, within HER17_RS04115at 935.918 kb on - strand, within HER17_RS04115at 935.967 kb on + strand, within HER17_RS04115at 935.968 kb on - strand, within HER17_RS04115at 936.018 kb on + strand, within HER17_RS04115at 936.018 kb on + strand, within HER17_RS04115at 936.018 kb on + strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.019 kb on - strand, within HER17_RS04115at 936.084 kb on + strand, within HER17_RS04115at 936.084 kb on + strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.085 kb on - strand, within HER17_RS04115at 936.101 kb on + strand, within HER17_RS04115at 936.101 kb on + strand, within HER17_RS04115at 936.101 kb on + strand, within HER17_RS04115at 936.102 kb on - strand, within HER17_RS04115at 936.102 kb on - strand, within HER17_RS04115at 936.102 kb on - strand, within HER17_RS04115at 936.105 kb on + strand, within HER17_RS04115at 936.105 kb on + strand, within HER17_RS04115at 936.105 kb on + strand, within HER17_RS04115at 936.105 kb on + strand, within HER17_RS04115at 936.106 kb on - strand, within HER17_RS04115at 936.106 kb on - strand, within HER17_RS04115at 936.172 kb on + strand, within HER17_RS04115at 936.218 kb on + strand, within HER17_RS04115at 936.264 kb on + strand, within HER17_RS04115at 936.405 kb on + strand, within HER17_RS04115at 936.405 kb on + strand, within HER17_RS04115at 936.511 kb on + strand, within HER17_RS04115at 936.511 kb on + strand, within HER17_RS04115at 936.511 kb on + strand, within HER17_RS04115at 936.553 kb on - strand, within HER17_RS04115at 936.560 kb on + strand, within HER17_RS04115at 936.580 kb on + strand, within HER17_RS04115at 936.580 kb on + strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.581 kb on - strand, within HER17_RS04115at 936.619 kb on - strand, within HER17_RS04115at 936.675 kb on - strand, within HER17_RS04115at 936.675 kb on - strand, within HER17_RS04115at 936.675 kb on - strand, within HER17_RS04115at 936.675 kb on - strand, within HER17_RS04115at 936.691 kb on - strand, within HER17_RS04115at 936.777 kb on + strand, within HER17_RS04115at 936.778 kb on - strand, within HER17_RS04115at 936.779 kb on + strand, within HER17_RS04115at 936.780 kb on - strand, within HER17_RS04115at 936.846 kb on - strand, within HER17_RS04115at 936.934 kb on - strand, within HER17_RS04115at 936.934 kb on - strand, within HER17_RS04115at 936.934 kb on - strand, within HER17_RS04115at 936.958 kb on + strand, within HER17_RS04115at 937.103 kb on + strand, within HER17_RS04115at 937.103 kb on + strand, within HER17_RS04115at 937.104 kb on - strand, within HER17_RS04115at 937.142 kb on - strand, within HER17_RS04115at 937.318 kb on - strand, within HER17_RS04115at 937.383 kb on - strandat 937.413 kb on - strandat 937.413 kb on - strandat 937.413 kb on - strandat 937.418 kb on - strandat 937.418 kb on - strandat 937.470 kb on - strandat 937.485 kb on + strandat 937.486 kb on - strandat 937.486 kb on - strandat 937.486 kb on - strandat 937.569 kb on + strandat 937.569 kb on + strandat 937.570 kb on - strandat 937.644 kb on - strandat 937.903 kb on - strandat 937.955 kb on + strandat 937.956 kb on - strandat 937.959 kb on - strandat 937.967 kb on - strandat 938.082 kb on + strand, within HER17_RS04120at 938.083 kb on - strand, within HER17_RS04120at 938.084 kb on + strand, within HER17_RS04120at 938.084 kb on + strand, within HER17_RS04120at 938.084 kb on + strand, within HER17_RS04120at 938.084 kb on + strand, within HER17_RS04120at 938.084 kb on + strand, within HER17_RS04120at 938.085 kb on - strand, within HER17_RS04120at 938.085 kb on - strand, within HER17_RS04120at 938.085 kb on - strand, within HER17_RS04120at 938.085 kb on - strand, within HER17_RS04120at 938.100 kb on + strand, within HER17_RS04120at 938.100 kb on + strand, within HER17_RS04120at 938.100 kb on + strand, within HER17_RS04120at 938.100 kb on + strand, within HER17_RS04120at 938.101 kb on - strand, within HER17_RS04120at 938.101 kb on - strand, within HER17_RS04120at 938.101 kb on - strand, within HER17_RS04120at 938.234 kb on + strand, within HER17_RS04120at 938.235 kb on - strand, within HER17_RS04120at 938.487 kb on + strand, within HER17_RS04120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
remove
934,339 + HER17_RS04110 0.30 -0.6
934,339 + HER17_RS04110 0.30 -0.8
934,339 + HER17_RS04110 0.30 -1.7
934,340 - HER17_RS04110 0.30 -1.4
934,340 - HER17_RS04110 0.30 -0.3
934,340 - HER17_RS04110 0.30 +1.3
934,340 - HER17_RS04110 0.30 +1.7
934,370 + HER17_RS04110 0.32 -0.6
934,371 - HER17_RS04110 0.32 -0.5
934,371 - HER17_RS04110 0.32 +3.8
934,371 - HER17_RS04110 0.32 -1.3
934,372 + HER17_RS04110 0.32 +1.7
934,373 - HER17_RS04110 0.33 -0.8
934,658 - HER17_RS04110 0.54 +1.0
934,692 - HER17_RS04110 0.56 +1.5
934,755 + HER17_RS04110 0.61 -1.4
934,831 - HER17_RS04110 0.66 -0.8
934,835 + HER17_RS04110 0.67 -1.5
934,835 + HER17_RS04110 0.67 -1.6
934,836 - HER17_RS04110 0.67 +2.2
934,839 - HER17_RS04110 0.67 -1.1
934,907 + HER17_RS04110 0.72 -1.0
934,907 + HER17_RS04110 0.72 -1.0
934,908 - HER17_RS04110 0.72 +1.9
934,908 - HER17_RS04110 0.72 +0.2
934,925 + HER17_RS04110 0.73 +0.2
935,040 + HER17_RS04110 0.82 +1.2
935,041 - HER17_RS04110 0.82 +1.7
935,045 + HER17_RS04110 0.82 -0.8
935,046 - HER17_RS04110 0.82 -1.2
935,046 - HER17_RS04110 0.82 +0.3
935,046 - HER17_RS04110 0.82 -0.1
935,046 - HER17_RS04110 0.82 +1.8
935,048 + HER17_RS04110 0.83 +0.6
935,048 + HER17_RS04110 0.83 +1.9
935,048 + HER17_RS04110 0.83 +0.3
935,049 - HER17_RS04110 0.83 -0.5
935,122 + HER17_RS04110 0.88 -0.6
935,122 + HER17_RS04110 0.88 +1.4
935,122 + HER17_RS04110 0.88 -2.8
935,122 + HER17_RS04110 0.88 -2.0
935,122 + HER17_RS04110 0.88 -1.6
935,122 + HER17_RS04110 0.88 -1.1
935,122 + HER17_RS04110 0.88 -1.2
935,122 + HER17_RS04110 0.88 -0.8
935,123 - HER17_RS04110 0.88 -1.1
935,123 - HER17_RS04110 0.88 +0.9
935,123 - HER17_RS04110 0.88 +0.2
935,123 - HER17_RS04110 0.88 +0.3
935,123 - HER17_RS04110 0.88 -0.1
935,123 - HER17_RS04110 0.88 +0.2
935,165 + +1.3
935,166 - -0.4
935,166 - +0.5
935,168 + -2.2
935,211 + -2.1
935,211 + +0.2
935,211 + -0.6
935,284 + -0.7
935,284 + -1.8
935,285 - -0.2
935,285 - -0.6
935,326 - +0.2
935,326 - -0.1
935,337 - +2.1
935,366 + +0.5
935,457 + +2.2
935,498 - +0.2
935,870 + HER17_RS04115 0.24 +1.7
935,876 + HER17_RS04115 0.24 +0.1
935,876 + HER17_RS04115 0.24 -0.0
935,877 - HER17_RS04115 0.24 -0.3
935,880 + HER17_RS04115 0.24 +0.1
935,880 + HER17_RS04115 0.24 +2.0
935,881 - HER17_RS04115 0.24 -0.7
935,881 - HER17_RS04115 0.24 +0.4
935,902 + HER17_RS04115 0.25 -0.5
935,903 - HER17_RS04115 0.25 -1.3
935,917 + HER17_RS04115 0.26 -0.3
935,917 + HER17_RS04115 0.26 +2.8
935,918 - HER17_RS04115 0.26 -0.1
935,918 - HER17_RS04115 0.26 +1.0
935,918 - HER17_RS04115 0.26 +0.1
935,967 + HER17_RS04115 0.28 -1.1
935,968 - HER17_RS04115 0.28 +3.0
936,018 + HER17_RS04115 0.30 +2.7
936,018 + HER17_RS04115 0.30 +1.8
936,018 + HER17_RS04115 0.30 +2.8
936,019 - HER17_RS04115 0.31 -0.3
936,019 - HER17_RS04115 0.31 +0.2
936,019 - HER17_RS04115 0.31 +0.5
936,019 - HER17_RS04115 0.31 -0.5
936,019 - HER17_RS04115 0.31 +0.3
936,019 - HER17_RS04115 0.31 -0.9
936,019 - HER17_RS04115 0.31 +0.0
936,019 - HER17_RS04115 0.31 +0.3
936,084 + HER17_RS04115 0.33 -0.3
936,084 + HER17_RS04115 0.33 +1.4
936,085 - HER17_RS04115 0.33 +2.8
936,085 - HER17_RS04115 0.33 +0.7
936,085 - HER17_RS04115 0.33 +1.9
936,085 - HER17_RS04115 0.33 +0.3
936,085 - HER17_RS04115 0.33 +0.7
936,085 - HER17_RS04115 0.33 +1.3
936,085 - HER17_RS04115 0.33 +2.1
936,101 + HER17_RS04115 0.34 +0.5
936,101 + HER17_RS04115 0.34 +0.5
936,101 + HER17_RS04115 0.34 +2.2
936,102 - HER17_RS04115 0.34 -1.3
936,102 - HER17_RS04115 0.34 +0.7
936,102 - HER17_RS04115 0.34 +1.9
936,105 + HER17_RS04115 0.34 -1.5
936,105 + HER17_RS04115 0.34 -0.2
936,105 + HER17_RS04115 0.34 -0.5
936,105 + HER17_RS04115 0.34 +1.5
936,106 - HER17_RS04115 0.34 +0.5
936,106 - HER17_RS04115 0.34 +0.2
936,172 + HER17_RS04115 0.37 +0.5
936,218 + HER17_RS04115 0.39 -0.6
936,264 + HER17_RS04115 0.41 +1.5
936,405 + HER17_RS04115 0.48 +1.1
936,405 + HER17_RS04115 0.48 +1.3
936,511 + HER17_RS04115 0.53 +0.5
936,511 + HER17_RS04115 0.53 +1.9
936,511 + HER17_RS04115 0.53 +0.2
936,553 - HER17_RS04115 0.54 +0.7
936,560 + HER17_RS04115 0.55 +2.2
936,580 + HER17_RS04115 0.56 +0.7
936,580 + HER17_RS04115 0.56 -1.0
936,581 - HER17_RS04115 0.56 -0.2
936,581 - HER17_RS04115 0.56 -1.3
936,581 - HER17_RS04115 0.56 -0.8
936,581 - HER17_RS04115 0.56 -1.0
936,581 - HER17_RS04115 0.56 +1.1
936,581 - HER17_RS04115 0.56 -0.8
936,581 - HER17_RS04115 0.56 +0.3
936,581 - HER17_RS04115 0.56 -0.5
936,581 - HER17_RS04115 0.56 -0.8
936,581 - HER17_RS04115 0.56 +0.8
936,619 - HER17_RS04115 0.57 +0.8
936,675 - HER17_RS04115 0.60 +0.1
936,675 - HER17_RS04115 0.60 +0.6
936,675 - HER17_RS04115 0.60 -0.1
936,675 - HER17_RS04115 0.60 +2.3
936,691 - HER17_RS04115 0.61 -1.7
936,777 + HER17_RS04115 0.64 -1.1
936,778 - HER17_RS04115 0.64 +1.3
936,779 + HER17_RS04115 0.65 +3.9
936,780 - HER17_RS04115 0.65 -1.8
936,846 - HER17_RS04115 0.68 -0.2
936,934 - HER17_RS04115 0.71 -0.7
936,934 - HER17_RS04115 0.71 -0.2
936,934 - HER17_RS04115 0.71 -2.2
936,958 + HER17_RS04115 0.73 +0.6
937,103 + HER17_RS04115 0.79 +0.7
937,103 + HER17_RS04115 0.79 +0.1
937,104 - HER17_RS04115 0.79 -0.5
937,142 - HER17_RS04115 0.81 +1.5
937,318 - HER17_RS04115 0.89 +0.3
937,383 - +1.1
937,413 - +0.6
937,413 - +0.8
937,413 - -1.4
937,418 - -0.1
937,418 - +0.7
937,470 - +0.3
937,485 + -1.0
937,486 - -0.8
937,486 - -0.5
937,486 - +0.8
937,569 + -1.5
937,569 + -0.1
937,570 - -0.4
937,644 - +1.5
937,903 - -0.1
937,955 + -0.4
937,956 - -1.3
937,959 - +0.5
937,967 - +5.9
938,082 + HER17_RS04120 0.15 +0.1
938,083 - HER17_RS04120 0.15 +0.2
938,084 + HER17_RS04120 0.15 -0.5
938,084 + HER17_RS04120 0.15 -0.7
938,084 + HER17_RS04120 0.15 -1.1
938,084 + HER17_RS04120 0.15 +1.8
938,084 + HER17_RS04120 0.15 -0.8
938,085 - HER17_RS04120 0.15 +0.3
938,085 - HER17_RS04120 0.15 +0.6
938,085 - HER17_RS04120 0.15 +1.1
938,085 - HER17_RS04120 0.15 -0.8
938,100 + HER17_RS04120 0.17 -0.1
938,100 + HER17_RS04120 0.17 -1.4
938,100 + HER17_RS04120 0.17 -0.1
938,100 + HER17_RS04120 0.17 -0.6
938,101 - HER17_RS04120 0.17 +1.2
938,101 - HER17_RS04120 0.17 +1.8
938,101 - HER17_RS04120 0.17 -0.1
938,234 + HER17_RS04120 0.34 -0.3
938,235 - HER17_RS04120 0.34 -1.3
938,487 + HER17_RS04120 0.65 +0.5

Or see this region's nucleotide sequence