Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04055 and HER17_RS04060 are separated by 198 nucleotides HER17_RS04060 and HER17_RS04065 are separated by 169 nucleotides HER17_RS04065 and HER17_RS04070 are separated by 665 nucleotides
HER17_RS04055: HER17_RS04055 - FlxA-like family protein, at 917,124 to 917,474
_RS04055
HER17_RS04060: HER17_RS04060 - FlxA-like family protein, at 917,673 to 918,083
_RS04060
HER17_RS04065: HER17_RS04065 - PAS domain-containing methyl-accepting chemotaxis protein, at 918,253 to 919,788
_RS04065
HER17_RS04070: HER17_RS04070 - galactarate dehydratase, at 920,454 to 922,028
_RS04070
Position (kb) 918
919
920 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 917.262 kb on + strand, within HER17_RS04055 at 917.262 kb on + strand, within HER17_RS04055 at 917.262 kb on + strand, within HER17_RS04055 at 917.345 kb on + strand, within HER17_RS04055 at 917.361 kb on - strand, within HER17_RS04055 at 917.420 kb on + strand, within HER17_RS04055 at 917.421 kb on - strand, within HER17_RS04055 at 917.453 kb on + strand at 917.453 kb on + strand at 917.453 kb on + strand at 917.454 kb on - strand at 917.498 kb on + strand at 917.510 kb on - strand at 917.518 kb on + strand at 917.528 kb on + strand at 917.528 kb on + strand at 917.529 kb on - strand at 917.531 kb on - strand at 917.541 kb on + strand at 917.562 kb on + strand at 917.602 kb on - strand at 917.665 kb on + strand at 917.680 kb on + strand at 917.680 kb on + strand at 917.680 kb on + strand at 917.680 kb on + strand at 917.680 kb on + strand at 917.680 kb on + strand at 917.681 kb on - strand at 917.681 kb on - strand at 917.681 kb on - strand at 917.681 kb on - strand at 917.681 kb on - strand at 917.681 kb on - strand at 917.797 kb on + strand, within HER17_RS04060 at 917.798 kb on - strand, within HER17_RS04060 at 917.849 kb on + strand, within HER17_RS04060 at 917.849 kb on + strand, within HER17_RS04060 at 917.885 kb on + strand, within HER17_RS04060 at 917.898 kb on + strand, within HER17_RS04060 at 917.898 kb on + strand, within HER17_RS04060 at 917.899 kb on - strand, within HER17_RS04060 at 917.966 kb on + strand, within HER17_RS04060 at 917.987 kb on + strand, within HER17_RS04060 at 918.026 kb on + strand, within HER17_RS04060 at 918.051 kb on + strand at 918.065 kb on + strand at 918.066 kb on - strand at 918.075 kb on - strand at 918.263 kb on + strand at 918.271 kb on - strand at 918.279 kb on + strand at 918.367 kb on + strand at 918.367 kb on + strand at 918.367 kb on + strand at 918.367 kb on + strand at 918.368 kb on - strand at 918.368 kb on - strand at 918.368 kb on - strand at 918.368 kb on - strand at 918.368 kb on - strand at 918.384 kb on + strand at 918.385 kb on - strand at 918.385 kb on - strand at 918.483 kb on + strand, within HER17_RS04065 at 918.484 kb on - strand, within HER17_RS04065 at 918.484 kb on - strand, within HER17_RS04065 at 918.523 kb on + strand, within HER17_RS04065 at 918.523 kb on + strand, within HER17_RS04065 at 918.523 kb on + strand, within HER17_RS04065 at 918.555 kb on + strand, within HER17_RS04065 at 918.634 kb on + strand, within HER17_RS04065 at 918.635 kb on - strand, within HER17_RS04065 at 918.717 kb on + strand, within HER17_RS04065 at 918.717 kb on + strand, within HER17_RS04065 at 918.718 kb on - strand, within HER17_RS04065 at 918.759 kb on + strand, within HER17_RS04065 at 918.780 kb on + strand, within HER17_RS04065 at 918.793 kb on - strand, within HER17_RS04065 at 918.870 kb on + strand, within HER17_RS04065 at 918.986 kb on - strand, within HER17_RS04065 at 918.993 kb on + strand, within HER17_RS04065 at 918.993 kb on + strand, within HER17_RS04065 at 919.099 kb on - strand, within HER17_RS04065 at 919.130 kb on - strand, within HER17_RS04065 at 919.132 kb on + strand, within HER17_RS04065 at 919.133 kb on - strand, within HER17_RS04065 at 919.348 kb on + strand, within HER17_RS04065 at 919.348 kb on + strand, within HER17_RS04065 at 919.358 kb on + strand, within HER17_RS04065 at 919.400 kb on + strand, within HER17_RS04065 at 919.400 kb on + strand, within HER17_RS04065 at 919.400 kb on + strand, within HER17_RS04065 at 919.400 kb on + strand, within HER17_RS04065 at 919.401 kb on - strand, within HER17_RS04065 at 919.401 kb on - strand, within HER17_RS04065 at 919.415 kb on + strand, within HER17_RS04065 at 919.415 kb on + strand, within HER17_RS04065 at 919.415 kb on + strand, within HER17_RS04065 at 919.443 kb on + strand, within HER17_RS04065 at 919.443 kb on + strand, within HER17_RS04065 at 919.443 kb on + strand, within HER17_RS04065 at 919.447 kb on + strand, within HER17_RS04065 at 919.455 kb on + strand, within HER17_RS04065 at 919.543 kb on + strand, within HER17_RS04065 at 919.576 kb on - strand, within HER17_RS04065 at 919.626 kb on + strand, within HER17_RS04065 at 919.626 kb on + strand, within HER17_RS04065 at 919.694 kb on + strand at 919.695 kb on - strand at 919.695 kb on - strand at 919.695 kb on - strand at 919.698 kb on + strand at 919.698 kb on + strand at 919.698 kb on + strand at 919.699 kb on - strand at 919.699 kb on - strand at 919.713 kb on + strand at 919.714 kb on - strand at 919.714 kb on - strand at 919.732 kb on + strand at 919.732 kb on + strand at 919.733 kb on - strand at 919.755 kb on - strand at 919.755 kb on - strand at 919.767 kb on + strand at 919.767 kb on + strand at 919.776 kb on + strand at 919.789 kb on + strand at 919.803 kb on + strand at 919.804 kb on - strand at 919.807 kb on + strand at 919.807 kb on + strand at 920.000 kb on - strand at 920.000 kb on - strand at 920.000 kb on - strand at 920.002 kb on - strand at 920.009 kb on - strand at 920.015 kb on - strand at 920.021 kb on + strand at 920.026 kb on - strand at 920.045 kb on + strand at 920.045 kb on + strand at 920.045 kb on + strand at 920.045 kb on + strand at 920.046 kb on - strand at 920.046 kb on - strand at 920.047 kb on + strand at 920.048 kb on - strand at 920.071 kb on - strand at 920.106 kb on - strand at 920.133 kb on + strand at 920.178 kb on + strand at 920.183 kb on - strand at 920.286 kb on - strand at 920.404 kb on + strand at 920.452 kb on - strand at 920.493 kb on - strand at 920.571 kb on + strand at 920.572 kb on - strand at 920.572 kb on - strand at 920.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 917,262 + HER17_RS04055 0.39 -0.2 917,262 + HER17_RS04055 0.39 -0.2 917,262 + HER17_RS04055 0.39 -2.0 917,345 + HER17_RS04055 0.63 -2.0 917,361 - HER17_RS04055 0.68 -0.3 917,420 + HER17_RS04055 0.84 +0.5 917,421 - HER17_RS04055 0.85 +0.2 917,453 + +0.3 917,453 + -2.1 917,453 + -0.1 917,454 - +0.2 917,498 + +2.5 917,510 - +0.9 917,518 + +1.9 917,528 + -0.7 917,528 + +0.8 917,529 - +0.9 917,531 - +0.7 917,541 + +0.3 917,562 + -0.8 917,602 - +4.1 917,665 + -0.6 917,680 + +3.3 917,680 + +3.2 917,680 + +0.6 917,680 + -0.0 917,680 + -1.5 917,680 + -0.1 917,681 - -0.7 917,681 - +0.0 917,681 - -0.2 917,681 - -1.0 917,681 - -1.1 917,681 - -0.1 917,797 + HER17_RS04060 0.30 -2.0 917,798 - HER17_RS04060 0.30 +0.7 917,849 + HER17_RS04060 0.43 +3.0 917,849 + HER17_RS04060 0.43 +1.4 917,885 + HER17_RS04060 0.52 -0.1 917,898 + HER17_RS04060 0.55 +1.4 917,898 + HER17_RS04060 0.55 -1.0 917,899 - HER17_RS04060 0.55 +0.5 917,966 + HER17_RS04060 0.71 -0.7 917,987 + HER17_RS04060 0.76 +1.5 918,026 + HER17_RS04060 0.86 -0.8 918,051 + +1.6 918,065 + -0.7 918,066 - +1.0 918,075 - -0.8 918,263 + -0.5 918,271 - -0.8 918,279 + -1.4 918,367 + -1.6 918,367 + +0.5 918,367 + +0.3 918,367 + +2.0 918,368 - -0.8 918,368 - +0.5 918,368 - +2.8 918,368 - +0.6 918,368 - +0.4 918,384 + -0.0 918,385 - +0.5 918,385 - -0.1 918,483 + HER17_RS04065 0.15 -0.5 918,484 - HER17_RS04065 0.15 +0.6 918,484 - HER17_RS04065 0.15 +0.8 918,523 + HER17_RS04065 0.18 -0.5 918,523 + HER17_RS04065 0.18 +0.6 918,523 + HER17_RS04065 0.18 +0.4 918,555 + HER17_RS04065 0.20 -0.1 918,634 + HER17_RS04065 0.25 -0.8 918,635 - HER17_RS04065 0.25 +3.2 918,717 + HER17_RS04065 0.30 +0.9 918,717 + HER17_RS04065 0.30 +1.3 918,718 - HER17_RS04065 0.30 -2.5 918,759 + HER17_RS04065 0.33 -2.2 918,780 + HER17_RS04065 0.34 +0.3 918,793 - HER17_RS04065 0.35 +1.3 918,870 + HER17_RS04065 0.40 +2.5 918,986 - HER17_RS04065 0.48 -0.1 918,993 + HER17_RS04065 0.48 -2.5 918,993 + HER17_RS04065 0.48 +3.0 919,099 - HER17_RS04065 0.55 -0.9 919,130 - HER17_RS04065 0.57 -1.8 919,132 + HER17_RS04065 0.57 +2.1 919,133 - HER17_RS04065 0.57 -0.5 919,348 + HER17_RS04065 0.71 -1.3 919,348 + HER17_RS04065 0.71 +0.9 919,358 + HER17_RS04065 0.72 -0.2 919,400 + HER17_RS04065 0.75 -1.8 919,400 + HER17_RS04065 0.75 +0.5 919,400 + HER17_RS04065 0.75 +0.1 919,400 + HER17_RS04065 0.75 -2.4 919,401 - HER17_RS04065 0.75 -0.0 919,401 - HER17_RS04065 0.75 -0.5 919,415 + HER17_RS04065 0.76 -0.3 919,415 + HER17_RS04065 0.76 +0.5 919,415 + HER17_RS04065 0.76 +1.4 919,443 + HER17_RS04065 0.77 +1.5 919,443 + HER17_RS04065 0.77 +0.7 919,443 + HER17_RS04065 0.77 -0.1 919,447 + HER17_RS04065 0.78 +0.9 919,455 + HER17_RS04065 0.78 -0.1 919,543 + HER17_RS04065 0.84 -0.3 919,576 - HER17_RS04065 0.86 -2.6 919,626 + HER17_RS04065 0.89 -1.1 919,626 + HER17_RS04065 0.89 -1.3 919,694 + +3.1 919,695 - +0.5 919,695 - -0.5 919,695 - -0.8 919,698 + +0.5 919,698 + -0.5 919,698 + +1.2 919,699 - -0.1 919,699 - -0.7 919,713 + +0.4 919,714 - +0.5 919,714 - -0.5 919,732 + +0.7 919,732 + -1.3 919,733 - +0.1 919,755 - +0.5 919,755 - +0.6 919,767 + -0.0 919,767 + -2.1 919,776 + -0.2 919,789 + -1.2 919,803 + +0.9 919,804 - -1.3 919,807 + -0.0 919,807 + +0.0 920,000 - +3.2 920,000 - +0.1 920,000 - +1.5 920,002 - -0.0 920,009 - +0.3 920,015 - +0.5 920,021 + +0.1 920,026 - +1.1 920,045 + +2.5 920,045 + -2.5 920,045 + -0.3 920,045 + +0.9 920,046 - -1.6 920,046 - +2.0 920,047 + -0.3 920,048 - -0.3 920,071 - -0.0 920,106 - +1.2 920,133 + +0.2 920,178 + -1.5 920,183 - -0.1 920,286 - -2.2 920,404 + +0.4 920,452 - +0.2 920,493 - -0.6 920,571 + +0.2 920,572 - -1.6 920,572 - -1.7 920,572 - +0.7
Or see this region's nucleotide sequence