Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03985 and HER17_RS03990 are separated by 2 nucleotides HER17_RS03990 and HER17_RS03995 are separated by 115 nucleotides HER17_RS03995 and HER17_RS04000 are separated by 249 nucleotides
HER17_RS03985: HER17_RS03985 - translocation/assembly module TamB, at 897,230 to 901,267
_RS03985
HER17_RS03990: HER17_RS03990 - gamma-glutamylcyclotransferase, at 901,270 to 901,629
_RS03990
HER17_RS03995: HER17_RS03995 - inorganic diphosphatase, at 901,745 to 902,275
_RS03995
HER17_RS04000: HER17_RS04000 - methyl-accepting chemotaxis protein, at 902,525 to 904,111
_RS04000
Position (kb) 901
902
903 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 900.923 kb on + strand at 900.923 kb on + strand at 900.923 kb on + strand at 900.924 kb on - strand at 900.924 kb on - strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.965 kb on - strand at 900.965 kb on - strand at 900.965 kb on - strand at 901.050 kb on + strand at 901.050 kb on + strand at 901.051 kb on - strand at 901.060 kb on - strand at 901.069 kb on + strand at 901.112 kb on + strand at 901.139 kb on + strand at 901.139 kb on + strand at 901.139 kb on + strand at 901.152 kb on + strand at 901.152 kb on + strand at 901.179 kb on + strand at 901.180 kb on - strand at 901.180 kb on - strand at 901.239 kb on + strand at 901.239 kb on + strand at 901.239 kb on + strand at 901.240 kb on - strand at 901.240 kb on - strand at 901.240 kb on - strand at 901.251 kb on - strand at 901.265 kb on + strand at 901.266 kb on - strand at 901.278 kb on + strand at 901.279 kb on - strand at 901.295 kb on + strand at 901.295 kb on + strand at 901.375 kb on + strand, within HER17_RS03990 at 901.376 kb on - strand, within HER17_RS03990 at 901.391 kb on - strand, within HER17_RS03990 at 901.403 kb on + strand, within HER17_RS03990 at 901.404 kb on - strand, within HER17_RS03990 at 901.436 kb on - strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.444 kb on - strand, within HER17_RS03990 at 901.475 kb on + strand, within HER17_RS03990 at 901.516 kb on - strand, within HER17_RS03990 at 901.541 kb on - strand, within HER17_RS03990 at 901.541 kb on - strand, within HER17_RS03990 at 901.546 kb on + strand, within HER17_RS03990 at 901.563 kb on - strand, within HER17_RS03990 at 901.661 kb on + strand at 901.662 kb on - strand at 901.703 kb on + strand at 901.725 kb on + strand at 901.732 kb on + strand at 901.746 kb on + strand at 901.746 kb on + strand at 901.746 kb on + strand at 901.747 kb on - strand at 901.747 kb on - strand at 902.393 kb on + strand at 902.411 kb on + strand at 902.493 kb on + strand at 902.494 kb on - strand at 902.494 kb on - strand at 902.580 kb on + strand at 902.581 kb on - strand at 902.644 kb on + strand at 902.696 kb on + strand, within HER17_RS04000 at 902.696 kb on + strand, within HER17_RS04000 at 902.696 kb on + strand, within HER17_RS04000 at 902.696 kb on + strand, within HER17_RS04000 at 902.696 kb on + strand, within HER17_RS04000 at 902.696 kb on + strand, within HER17_RS04000 at 902.697 kb on - strand, within HER17_RS04000 at 902.697 kb on - strand, within HER17_RS04000 at 902.697 kb on - strand, within HER17_RS04000 at 902.698 kb on + strand, within HER17_RS04000 at 902.801 kb on + strand, within HER17_RS04000 at 902.801 kb on + strand, within HER17_RS04000 at 902.801 kb on + strand, within HER17_RS04000 at 902.801 kb on + strand, within HER17_RS04000 at 902.844 kb on - strand, within HER17_RS04000 at 902.887 kb on + strand, within HER17_RS04000 at 902.897 kb on + strand, within HER17_RS04000 at 902.906 kb on + strand, within HER17_RS04000 at 902.906 kb on + strand, within HER17_RS04000 at 902.906 kb on + strand, within HER17_RS04000 at 902.907 kb on - strand, within HER17_RS04000 at 902.966 kb on + strand, within HER17_RS04000 at 902.966 kb on + strand, within HER17_RS04000 at 902.966 kb on + strand, within HER17_RS04000 at 902.969 kb on + strand, within HER17_RS04000 at 902.970 kb on - strand, within HER17_RS04000 at 902.970 kb on - strand, within HER17_RS04000 at 902.970 kb on - strand, within HER17_RS04000 at 902.992 kb on - strand, within HER17_RS04000 at 903.124 kb on + strand, within HER17_RS04000 at 903.124 kb on + strand, within HER17_RS04000 at 903.124 kb on + strand, within HER17_RS04000 at 903.124 kb on + strand, within HER17_RS04000 at 903.125 kb on - strand, within HER17_RS04000 at 903.125 kb on - strand, within HER17_RS04000 at 903.125 kb on - strand, within HER17_RS04000 at 903.125 kb on - strand, within HER17_RS04000 at 903.127 kb on - strand, within HER17_RS04000
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 900,923 + +0.1 900,923 + +0.2 900,923 + -1.8 900,924 - -1.5 900,924 - +1.8 900,964 + -0.7 900,964 + +2.8 900,964 + +0.5 900,964 + +0.3 900,965 - +1.9 900,965 - +1.9 900,965 - +0.4 901,050 + -0.1 901,050 + -0.1 901,051 - -0.1 901,060 - -0.7 901,069 + +1.0 901,112 + +1.3 901,139 + +0.6 901,139 + -2.2 901,139 + +0.7 901,152 + +0.6 901,152 + +1.3 901,179 + -0.8 901,180 - +0.9 901,180 - -0.0 901,239 + +0.3 901,239 + -0.8 901,239 + +0.5 901,240 - -0.1 901,240 - +1.5 901,240 - +0.5 901,251 - -1.8 901,265 + -1.3 901,266 - -0.5 901,278 + -0.5 901,279 - +1.7 901,295 + +1.8 901,295 + -2.2 901,375 + HER17_RS03990 0.29 -2.0 901,376 - HER17_RS03990 0.29 +0.2 901,391 - HER17_RS03990 0.34 -0.8 901,403 + HER17_RS03990 0.37 +2.3 901,404 - HER17_RS03990 0.37 -1.1 901,436 - HER17_RS03990 0.46 -1.1 901,443 + HER17_RS03990 0.48 +0.5 901,443 + HER17_RS03990 0.48 -0.5 901,443 + HER17_RS03990 0.48 -1.0 901,443 + HER17_RS03990 0.48 -2.2 901,443 + HER17_RS03990 0.48 -0.3 901,444 - HER17_RS03990 0.48 -1.2 901,475 + HER17_RS03990 0.57 -1.5 901,516 - HER17_RS03990 0.68 -0.3 901,541 - HER17_RS03990 0.75 -0.7 901,541 - HER17_RS03990 0.75 -1.3 901,546 + HER17_RS03990 0.77 +0.5 901,563 - HER17_RS03990 0.81 -1.7 901,661 + +2.9 901,662 - -1.0 901,703 + -0.7 901,725 + +0.5 901,732 + -0.8 901,746 + +0.0 901,746 + -1.5 901,746 + -2.3 901,747 - -2.1 901,747 - -0.5 902,393 + -0.4 902,411 + -0.0 902,493 + -0.5 902,494 - -1.2 902,494 - +1.5 902,580 + -0.8 902,581 - +1.5 902,644 + -1.0 902,696 + HER17_RS04000 0.11 -0.3 902,696 + HER17_RS04000 0.11 -0.1 902,696 + HER17_RS04000 0.11 +0.5 902,696 + HER17_RS04000 0.11 -0.3 902,696 + HER17_RS04000 0.11 -0.5 902,696 + HER17_RS04000 0.11 -0.8 902,697 - HER17_RS04000 0.11 +1.9 902,697 - HER17_RS04000 0.11 -1.3 902,697 - HER17_RS04000 0.11 +1.5 902,698 + HER17_RS04000 0.11 -1.1 902,801 + HER17_RS04000 0.17 -0.8 902,801 + HER17_RS04000 0.17 -0.7 902,801 + HER17_RS04000 0.17 +1.3 902,801 + HER17_RS04000 0.17 +0.3 902,844 - HER17_RS04000 0.20 -1.3 902,887 + HER17_RS04000 0.23 -0.5 902,897 + HER17_RS04000 0.23 -2.2 902,906 + HER17_RS04000 0.24 +3.4 902,906 + HER17_RS04000 0.24 -1.3 902,906 + HER17_RS04000 0.24 -0.3 902,907 - HER17_RS04000 0.24 -1.6 902,966 + HER17_RS04000 0.28 -0.7 902,966 + HER17_RS04000 0.28 -0.5 902,966 + HER17_RS04000 0.28 +0.9 902,969 + HER17_RS04000 0.28 -2.0 902,970 - HER17_RS04000 0.28 +0.3 902,970 - HER17_RS04000 0.28 -0.3 902,970 - HER17_RS04000 0.28 +1.6 902,992 - HER17_RS04000 0.29 -0.8 903,124 + HER17_RS04000 0.38 +0.6 903,124 + HER17_RS04000 0.38 +1.2 903,124 + HER17_RS04000 0.38 -1.0 903,124 + HER17_RS04000 0.38 -0.3 903,125 - HER17_RS04000 0.38 -1.8 903,125 - HER17_RS04000 0.38 +0.2 903,125 - HER17_RS04000 0.38 +0.4 903,125 - HER17_RS04000 0.38 -0.7 903,127 - HER17_RS04000 0.38 +1.5
Or see this region's nucleotide sequence