Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03340 and HER17_RS03345 are separated by 89 nucleotides HER17_RS03345 and HER17_RS03350 are separated by 258 nucleotides
HER17_RS03340: HER17_RS03340 - TonB-dependent siderophore receptor, at 759,154 to 761,448
_RS03340
HER17_RS03345: HER17_RS03345 - metalloregulator ArsR/SmtB family transcription factor, at 761,538 to 761,849
_RS03345
HER17_RS03350: HER17_RS03350 - RtcB family protein, at 762,108 to 763,508
_RS03350
Position (kb) 761
762 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 760.624 kb on + strand, within HER17_RS03340 at 760.624 kb on + strand, within HER17_RS03340 at 760.625 kb on - strand, within HER17_RS03340 at 760.638 kb on - strand, within HER17_RS03340 at 760.654 kb on + strand, within HER17_RS03340 at 760.655 kb on - strand, within HER17_RS03340 at 760.655 kb on - strand, within HER17_RS03340 at 760.656 kb on + strand, within HER17_RS03340 at 760.656 kb on + strand, within HER17_RS03340 at 760.690 kb on + strand, within HER17_RS03340 at 760.690 kb on + strand, within HER17_RS03340 at 760.690 kb on + strand, within HER17_RS03340 at 760.691 kb on - strand, within HER17_RS03340 at 760.691 kb on - strand, within HER17_RS03340 at 760.691 kb on - strand, within HER17_RS03340 at 760.738 kb on + strand, within HER17_RS03340 at 760.782 kb on + strand, within HER17_RS03340 at 760.828 kb on - strand, within HER17_RS03340 at 760.834 kb on + strand, within HER17_RS03340 at 760.834 kb on + strand, within HER17_RS03340 at 760.835 kb on - strand, within HER17_RS03340 at 760.835 kb on - strand, within HER17_RS03340 at 760.835 kb on - strand, within HER17_RS03340 at 760.842 kb on + strand, within HER17_RS03340 at 760.850 kb on - strand, within HER17_RS03340 at 760.916 kb on - strand, within HER17_RS03340 at 760.916 kb on - strand, within HER17_RS03340 at 760.916 kb on - strand, within HER17_RS03340 at 760.916 kb on - strand, within HER17_RS03340 at 760.950 kb on - strand, within HER17_RS03340 at 760.981 kb on - strand, within HER17_RS03340 at 761.068 kb on + strand, within HER17_RS03340 at 761.068 kb on + strand, within HER17_RS03340 at 761.068 kb on + strand, within HER17_RS03340 at 761.069 kb on - strand, within HER17_RS03340 at 761.069 kb on - strand, within HER17_RS03340 at 761.080 kb on - strand, within HER17_RS03340 at 761.158 kb on + strand, within HER17_RS03340 at 761.158 kb on + strand, within HER17_RS03340 at 761.158 kb on + strand, within HER17_RS03340 at 761.182 kb on + strand, within HER17_RS03340 at 761.183 kb on - strand, within HER17_RS03340 at 761.183 kb on - strand, within HER17_RS03340 at 761.185 kb on - strand, within HER17_RS03340 at 761.188 kb on + strand, within HER17_RS03340 at 761.189 kb on - strand, within HER17_RS03340 at 761.189 kb on - strand, within HER17_RS03340 at 761.189 kb on - strand, within HER17_RS03340 at 761.237 kb on - strand at 761.237 kb on - strand at 761.259 kb on + strand at 761.259 kb on + strand at 761.259 kb on + strand at 761.259 kb on + strand at 761.260 kb on - strand at 761.260 kb on - strand at 761.260 kb on - strand at 761.263 kb on + strand at 761.263 kb on + strand at 761.264 kb on - strand at 761.264 kb on - strand at 761.362 kb on - strand at 761.362 kb on - strand at 761.398 kb on + strand at 761.398 kb on + strand at 761.398 kb on + strand at 761.399 kb on - strand at 761.399 kb on - strand at 761.436 kb on + strand at 761.437 kb on - strand at 761.437 kb on - strand at 761.437 kb on - strand at 761.447 kb on - strand at 761.447 kb on - strand at 761.464 kb on + strand at 761.465 kb on - strand at 761.468 kb on + strand at 761.469 kb on - strand at 761.469 kb on - strand at 761.516 kb on - strand at 761.516 kb on - strand at 761.536 kb on + strand at 761.536 kb on + strand at 761.536 kb on + strand at 761.537 kb on - strand at 761.559 kb on + strand at 761.559 kb on + strand at 761.560 kb on - strand at 761.560 kb on - strand at 761.605 kb on + strand, within HER17_RS03345 at 761.629 kb on + strand, within HER17_RS03345 at 761.633 kb on + strand, within HER17_RS03345 at 761.633 kb on + strand, within HER17_RS03345 at 761.633 kb on + strand, within HER17_RS03345 at 761.633 kb on + strand, within HER17_RS03345 at 761.633 kb on + strand, within HER17_RS03345 at 761.633 kb on + strand, within HER17_RS03345 at 761.633 kb on + strand, within HER17_RS03345 at 761.634 kb on - strand, within HER17_RS03345 at 761.634 kb on - strand, within HER17_RS03345 at 761.634 kb on - strand, within HER17_RS03345 at 761.634 kb on - strand, within HER17_RS03345 at 761.634 kb on - strand, within HER17_RS03345 at 761.634 kb on - strand, within HER17_RS03345 at 761.634 kb on - strand, within HER17_RS03345 at 761.738 kb on + strand, within HER17_RS03345 at 761.738 kb on + strand, within HER17_RS03345 at 761.739 kb on - strand, within HER17_RS03345 at 761.742 kb on + strand, within HER17_RS03345 at 761.742 kb on + strand, within HER17_RS03345 at 761.742 kb on + strand, within HER17_RS03345 at 761.742 kb on + strand, within HER17_RS03345 at 761.742 kb on + strand, within HER17_RS03345 at 761.742 kb on + strand, within HER17_RS03345 at 761.743 kb on - strand, within HER17_RS03345 at 761.743 kb on - strand, within HER17_RS03345 at 761.743 kb on - strand, within HER17_RS03345 at 761.790 kb on - strand, within HER17_RS03345 at 761.790 kb on - strand, within HER17_RS03345 at 761.819 kb on + strand at 761.819 kb on + strand at 761.855 kb on + strand at 761.856 kb on - strand at 761.856 kb on - strand at 761.856 kb on - strand at 761.880 kb on + strand at 761.881 kb on - strand at 761.886 kb on + strand at 761.890 kb on + strand at 761.890 kb on + strand at 761.891 kb on - strand at 761.895 kb on + strand at 761.895 kb on + strand at 761.904 kb on + strand at 761.904 kb on + strand at 761.905 kb on - strand at 761.945 kb on + strand at 761.945 kb on + strand at 761.988 kb on + strand at 762.009 kb on + strand at 762.010 kb on - strand at 762.010 kb on - strand at 762.098 kb on - strand at 762.101 kb on + strand at 762.102 kb on - strand at 762.102 kb on - strand at 762.113 kb on + strand at 762.113 kb on + strand at 762.113 kb on + strand at 762.120 kb on - strand at 762.120 kb on - strand at 762.128 kb on - strand at 762.155 kb on - strand at 762.176 kb on + strand at 762.176 kb on + strand at 762.176 kb on + strand at 762.176 kb on + strand at 762.177 kb on - strand at 762.177 kb on - strand at 762.177 kb on - strand at 762.177 kb on - strand at 762.177 kb on - strand at 762.180 kb on + strand at 762.180 kb on + strand at 762.181 kb on - strand at 762.181 kb on - strand at 762.181 kb on - strand at 762.287 kb on - strand, within HER17_RS03350 at 762.458 kb on + strand, within HER17_RS03350 at 762.459 kb on - strand, within HER17_RS03350 at 762.459 kb on - strand, within HER17_RS03350 at 762.659 kb on + strand, within HER17_RS03350 at 762.659 kb on + strand, within HER17_RS03350 at 762.660 kb on - strand, within HER17_RS03350 at 762.730 kb on + strand, within HER17_RS03350 at 762.822 kb on + strand, within HER17_RS03350 at 762.822 kb on + strand, within HER17_RS03350
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 760,624 + HER17_RS03340 0.64 -1.6 760,624 + HER17_RS03340 0.64 -1.5 760,625 - HER17_RS03340 0.64 +3.4 760,638 - HER17_RS03340 0.65 +0.3 760,654 + HER17_RS03340 0.65 -0.1 760,655 - HER17_RS03340 0.65 -2.1 760,655 - HER17_RS03340 0.65 -0.8 760,656 + HER17_RS03340 0.65 +0.0 760,656 + HER17_RS03340 0.65 -0.1 760,690 + HER17_RS03340 0.67 -0.1 760,690 + HER17_RS03340 0.67 -0.1 760,690 + HER17_RS03340 0.67 +0.7 760,691 - HER17_RS03340 0.67 +2.2 760,691 - HER17_RS03340 0.67 +0.5 760,691 - HER17_RS03340 0.67 +0.6 760,738 + HER17_RS03340 0.69 -1.0 760,782 + HER17_RS03340 0.71 -0.5 760,828 - HER17_RS03340 0.73 -0.1 760,834 + HER17_RS03340 0.73 -0.5 760,834 + HER17_RS03340 0.73 +1.1 760,835 - HER17_RS03340 0.73 +0.9 760,835 - HER17_RS03340 0.73 -0.1 760,835 - HER17_RS03340 0.73 -1.5 760,842 + HER17_RS03340 0.74 +1.0 760,850 - HER17_RS03340 0.74 +1.8 760,916 - HER17_RS03340 0.77 -0.7 760,916 - HER17_RS03340 0.77 +0.2 760,916 - HER17_RS03340 0.77 +4.9 760,916 - HER17_RS03340 0.77 -0.1 760,950 - HER17_RS03340 0.78 +1.9 760,981 - HER17_RS03340 0.80 -0.2 761,068 + HER17_RS03340 0.83 +0.5 761,068 + HER17_RS03340 0.83 +0.9 761,068 + HER17_RS03340 0.83 +0.2 761,069 - HER17_RS03340 0.83 +1.8 761,069 - HER17_RS03340 0.83 +0.0 761,080 - HER17_RS03340 0.84 +0.6 761,158 + HER17_RS03340 0.87 +0.1 761,158 + HER17_RS03340 0.87 +1.3 761,158 + HER17_RS03340 0.87 +1.9 761,182 + HER17_RS03340 0.88 -0.5 761,183 - HER17_RS03340 0.88 -1.0 761,183 - HER17_RS03340 0.88 -0.3 761,185 - HER17_RS03340 0.88 -0.4 761,188 + HER17_RS03340 0.89 +1.1 761,189 - HER17_RS03340 0.89 +0.2 761,189 - HER17_RS03340 0.89 +0.3 761,189 - HER17_RS03340 0.89 -1.6 761,237 - +2.7 761,237 - +0.8 761,259 + -0.8 761,259 + -0.2 761,259 + -0.7 761,259 + -0.8 761,260 - -1.0 761,260 - -1.5 761,260 - +2.1 761,263 + +0.9 761,263 + -2.1 761,264 - +0.2 761,264 - +1.8 761,362 - -1.5 761,362 - -0.4 761,398 + -0.1 761,398 + -1.8 761,398 + +0.5 761,399 - +0.5 761,399 - +0.7 761,436 + +1.9 761,437 - +2.9 761,437 - -1.2 761,437 - +3.3 761,447 - +1.8 761,447 - +1.5 761,464 + -0.4 761,465 - -1.1 761,468 + -1.1 761,469 - -0.1 761,469 - -0.1 761,516 - -0.8 761,516 - -1.2 761,536 + +1.4 761,536 + -1.5 761,536 + -0.1 761,537 - -1.1 761,559 + -0.2 761,559 + +2.3 761,560 - -1.2 761,560 - +0.7 761,605 + HER17_RS03345 0.21 +0.9 761,629 + HER17_RS03345 0.29 -0.6 761,633 + HER17_RS03345 0.30 +0.3 761,633 + HER17_RS03345 0.30 -0.5 761,633 + HER17_RS03345 0.30 -0.3 761,633 + HER17_RS03345 0.30 +0.4 761,633 + HER17_RS03345 0.30 -2.7 761,633 + HER17_RS03345 0.30 -1.1 761,633 + HER17_RS03345 0.30 -1.9 761,634 - HER17_RS03345 0.31 +2.5 761,634 - HER17_RS03345 0.31 -0.3 761,634 - HER17_RS03345 0.31 +0.9 761,634 - HER17_RS03345 0.31 -1.7 761,634 - HER17_RS03345 0.31 +0.4 761,634 - HER17_RS03345 0.31 +0.1 761,634 - HER17_RS03345 0.31 -0.5 761,738 + HER17_RS03345 0.64 -0.1 761,738 + HER17_RS03345 0.64 -1.0 761,739 - HER17_RS03345 0.64 +0.0 761,742 + HER17_RS03345 0.65 -0.6 761,742 + HER17_RS03345 0.65 -0.0 761,742 + HER17_RS03345 0.65 -0.5 761,742 + HER17_RS03345 0.65 +0.7 761,742 + HER17_RS03345 0.65 +1.0 761,742 + HER17_RS03345 0.65 -0.4 761,743 - HER17_RS03345 0.66 -0.5 761,743 - HER17_RS03345 0.66 -0.1 761,743 - HER17_RS03345 0.66 +2.6 761,790 - HER17_RS03345 0.81 -0.2 761,790 - HER17_RS03345 0.81 -2.0 761,819 + -0.7 761,819 + -0.5 761,855 + -1.1 761,856 - -0.9 761,856 - +0.5 761,856 - +1.7 761,880 + +1.1 761,881 - +0.1 761,886 + -1.7 761,890 + -1.7 761,890 + +2.5 761,891 - +0.1 761,895 + -0.5 761,895 + -0.4 761,904 + -2.4 761,904 + +1.7 761,905 - -0.1 761,945 + -0.8 761,945 + +0.4 761,988 + +0.3 762,009 + +0.0 762,010 - -0.1 762,010 - +0.3 762,098 - -1.3 762,101 + -0.2 762,102 - -1.4 762,102 - +0.6 762,113 + +0.8 762,113 + -1.2 762,113 + +0.2 762,120 - -0.1 762,120 - -1.1 762,128 - -2.3 762,155 - +0.5 762,176 + +0.4 762,176 + +0.0 762,176 + -1.1 762,176 + -1.1 762,177 - -0.5 762,177 - -0.1 762,177 - -0.3 762,177 - -1.0 762,177 - +2.3 762,180 + +0.2 762,180 + +2.2 762,181 - -1.6 762,181 - +4.4 762,181 - +0.5 762,287 - HER17_RS03350 0.13 +0.3 762,458 + HER17_RS03350 0.25 -0.1 762,459 - HER17_RS03350 0.25 +1.2 762,459 - HER17_RS03350 0.25 -0.2 762,659 + HER17_RS03350 0.39 -0.6 762,659 + HER17_RS03350 0.39 +1.2 762,660 - HER17_RS03350 0.39 -0.2 762,730 + HER17_RS03350 0.44 +1.3 762,822 + HER17_RS03350 0.51 +1.4 762,822 + HER17_RS03350 0.51 -0.4
Or see this region's nucleotide sequence