Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01160

Experiment: Tuber-Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS01155 and HER17_RS01160 are separated by 125 nucleotidesHER17_RS01160 and HER17_RS01165 overlap by 10 nucleotides HER17_RS01155: HER17_RS01155 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 269,347 to 270,465 _RS01155 HER17_RS01160: HER17_RS01160 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 270,591 to 271,853 _RS01160 HER17_RS01165: HER17_RS01165 - dTDP-glucose 4,6-dehydratase, at 271,844 to 272,917 _RS01165 Position (kb) 270 271 272Strain fitness (log2 ratio) -2 -1 0 1 2 3at 269.621 kb on + strand, within HER17_RS01155at 269.621 kb on + strand, within HER17_RS01155at 269.622 kb on - strand, within HER17_RS01155at 269.622 kb on - strand, within HER17_RS01155at 269.669 kb on - strand, within HER17_RS01155at 269.676 kb on + strand, within HER17_RS01155at 269.694 kb on - strand, within HER17_RS01155at 269.709 kb on + strand, within HER17_RS01155at 269.722 kb on + strand, within HER17_RS01155at 269.723 kb on - strand, within HER17_RS01155at 269.746 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.841 kb on + strand, within HER17_RS01155at 269.856 kb on + strand, within HER17_RS01155at 269.859 kb on + strand, within HER17_RS01155at 269.927 kb on + strand, within HER17_RS01155at 269.927 kb on + strand, within HER17_RS01155at 269.938 kb on + strand, within HER17_RS01155at 270.062 kb on + strand, within HER17_RS01155at 270.063 kb on - strand, within HER17_RS01155at 270.093 kb on + strand, within HER17_RS01155at 270.093 kb on + strand, within HER17_RS01155at 270.136 kb on - strand, within HER17_RS01155at 270.163 kb on + strand, within HER17_RS01155at 270.164 kb on - strand, within HER17_RS01155at 270.164 kb on - strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.179 kb on - strand, within HER17_RS01155at 270.179 kb on - strand, within HER17_RS01155at 270.196 kb on + strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.320 kb on + strand, within HER17_RS01155at 270.321 kb on - strand, within HER17_RS01155at 270.357 kb on + strandat 270.357 kb on + strandat 270.357 kb on + strandat 270.357 kb on + strandat 270.357 kb on + strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.382 kb on + strandat 270.412 kb on + strandat 270.464 kb on - strandat 270.538 kb on + strandat 270.539 kb on - strandat 270.539 kb on - strandat 270.542 kb on + strandat 270.543 kb on - strandat 270.543 kb on - strandat 270.543 kb on - strandat 270.543 kb on - strandat 270.570 kb on + strandat 270.578 kb on - strandat 270.590 kb on + strandat 270.590 kb on + strandat 270.590 kb on + strandat 270.591 kb on - strandat 270.591 kb on - strandat 270.591 kb on - strandat 270.599 kb on + strandat 270.600 kb on - strandat 270.603 kb on - strandat 270.879 kb on + strand, within HER17_RS01160at 270.879 kb on + strand, within HER17_RS01160at 271.050 kb on - strand, within HER17_RS01160at 271.104 kb on - strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.196 kb on + strand, within HER17_RS01160at 271.199 kb on + strand, within HER17_RS01160at 271.309 kb on + strand, within HER17_RS01160at 271.309 kb on + strand, within HER17_RS01160at 271.310 kb on - strand, within HER17_RS01160at 271.310 kb on - strand, within HER17_RS01160at 271.352 kb on + strand, within HER17_RS01160at 271.353 kb on - strand, within HER17_RS01160at 271.449 kb on - strand, within HER17_RS01160at 271.518 kb on + strand, within HER17_RS01160at 271.554 kb on - strand, within HER17_RS01160at 271.625 kb on + strand, within HER17_RS01160at 271.625 kb on + strand, within HER17_RS01160at 271.741 kb on + strandat 271.762 kb on + strandat 271.762 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
remove
269,621 + HER17_RS01155 0.24 -0.5
269,621 + HER17_RS01155 0.24 +0.4
269,622 - HER17_RS01155 0.25 +0.3
269,622 - HER17_RS01155 0.25 -0.3
269,669 - HER17_RS01155 0.29 -0.3
269,676 + HER17_RS01155 0.29 -0.1
269,694 - HER17_RS01155 0.31 -0.0
269,709 + HER17_RS01155 0.32 +0.5
269,722 + HER17_RS01155 0.34 +1.2
269,723 - HER17_RS01155 0.34 -1.5
269,746 - HER17_RS01155 0.36 +1.0
269,777 - HER17_RS01155 0.38 -0.9
269,777 - HER17_RS01155 0.38 -1.1
269,777 - HER17_RS01155 0.38 +1.5
269,777 - HER17_RS01155 0.38 +0.7
269,841 + HER17_RS01155 0.44 -0.3
269,856 + HER17_RS01155 0.45 +1.7
269,859 + HER17_RS01155 0.46 +0.8
269,927 + HER17_RS01155 0.52 -0.1
269,927 + HER17_RS01155 0.52 -0.6
269,938 + HER17_RS01155 0.53 -0.7
270,062 + HER17_RS01155 0.64 -0.4
270,063 - HER17_RS01155 0.64 +1.0
270,093 + HER17_RS01155 0.67 -0.5
270,093 + HER17_RS01155 0.67 -0.5
270,136 - HER17_RS01155 0.71 +0.6
270,163 + HER17_RS01155 0.73 +1.0
270,164 - HER17_RS01155 0.73 -0.3
270,164 - HER17_RS01155 0.73 -0.9
270,178 + HER17_RS01155 0.74 +2.8
270,178 + HER17_RS01155 0.74 -1.0
270,178 + HER17_RS01155 0.74 -2.0
270,179 - HER17_RS01155 0.74 -0.1
270,179 - HER17_RS01155 0.74 -0.3
270,196 + HER17_RS01155 0.76 -0.0
270,197 - HER17_RS01155 0.76 -0.7
270,197 - HER17_RS01155 0.76 -0.8
270,197 - HER17_RS01155 0.76 -0.2
270,197 - HER17_RS01155 0.76 -1.1
270,197 - HER17_RS01155 0.76 -1.9
270,320 + HER17_RS01155 0.87 -1.6
270,321 - HER17_RS01155 0.87 +2.3
270,357 + -0.1
270,357 + +1.1
270,357 + -1.2
270,357 + -1.7
270,357 + -0.1
270,358 - +0.8
270,358 - +0.6
270,358 - +1.6
270,358 - -0.5
270,358 - -0.3
270,358 - -0.4
270,358 - +1.3
270,358 - +0.3
270,382 + -0.7
270,412 + -2.0
270,464 - -2.0
270,538 + -0.0
270,539 - +2.2
270,539 - -1.6
270,542 + -0.4
270,543 - -0.7
270,543 - +1.0
270,543 - -1.3
270,543 - +0.2
270,570 + -0.9
270,578 - +1.3
270,590 + +0.1
270,590 + -0.9
270,590 + -1.6
270,591 - -1.7
270,591 - -0.6
270,591 - -0.5
270,599 + -0.2
270,600 - -1.2
270,603 - -1.3
270,879 + HER17_RS01160 0.23 -0.7
270,879 + HER17_RS01160 0.23 -0.3
271,050 - HER17_RS01160 0.36 -0.9
271,104 - HER17_RS01160 0.41 -2.1
271,164 + HER17_RS01160 0.45 +0.5
271,164 + HER17_RS01160 0.45 -0.4
271,164 + HER17_RS01160 0.45 +0.7
271,164 + HER17_RS01160 0.45 -0.1
271,165 - HER17_RS01160 0.45 +0.8
271,165 - HER17_RS01160 0.45 -2.3
271,165 - HER17_RS01160 0.45 +0.1
271,165 - HER17_RS01160 0.45 +1.5
271,165 - HER17_RS01160 0.45 -1.0
271,165 - HER17_RS01160 0.45 +2.8
271,196 + HER17_RS01160 0.48 +0.7
271,199 + HER17_RS01160 0.48 -0.6
271,309 + HER17_RS01160 0.57 +0.1
271,309 + HER17_RS01160 0.57 -2.4
271,310 - HER17_RS01160 0.57 -0.1
271,310 - HER17_RS01160 0.57 +0.1
271,352 + HER17_RS01160 0.60 -0.7
271,353 - HER17_RS01160 0.60 -0.5
271,449 - HER17_RS01160 0.68 +0.4
271,518 + HER17_RS01160 0.73 -0.2
271,554 - HER17_RS01160 0.76 -1.0
271,625 + HER17_RS01160 0.82 -1.0
271,625 + HER17_RS01160 0.82 +0.7
271,741 + +0.3
271,762 + -1.4
271,762 + -1.0

Or see this region's nucleotide sequence