Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00810 and HER17_RS00815 are separated by 17 nucleotides HER17_RS00815 and HER17_RS00820 are separated by 233 nucleotides HER17_RS00820 and HER17_RS00825 are separated by 255 nucleotides
HER17_RS00810: HER17_RS00810 - DUF805 domain-containing protein, at 189,881 to 190,303
_RS00810
HER17_RS00815: HER17_RS00815 - ferredoxin--NADP(+) reductase, at 190,321 to 191,067
_RS00815
HER17_RS00820: HER17_RS00820 - class II fructose-bisphosphatase, at 191,301 to 192,311
_RS00820
HER17_RS00825: HER17_RS00825 - glycerol kinase GlpK, at 192,567 to 194,078
_RS00825
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 190.301 kb on + strand at 190.302 kb on - strand at 190.310 kb on + strand at 190.310 kb on + strand at 190.310 kb on + strand at 190.310 kb on + strand at 190.310 kb on + strand at 190.310 kb on + strand at 190.311 kb on - strand at 190.311 kb on - strand at 190.322 kb on + strand at 190.323 kb on - strand at 190.323 kb on - strand at 190.323 kb on - strand at 190.344 kb on + strand at 190.344 kb on + strand at 190.345 kb on - strand at 190.345 kb on - strand at 190.345 kb on - strand at 190.345 kb on - strand at 190.415 kb on - strand, within HER17_RS00815 at 190.503 kb on + strand, within HER17_RS00815 at 190.504 kb on - strand, within HER17_RS00815 at 190.616 kb on + strand, within HER17_RS00815 at 190.616 kb on + strand, within HER17_RS00815 at 190.660 kb on - strand, within HER17_RS00815 at 190.684 kb on - strand, within HER17_RS00815 at 190.684 kb on - strand, within HER17_RS00815 at 190.684 kb on - strand, within HER17_RS00815 at 190.706 kb on + strand, within HER17_RS00815 at 190.706 kb on + strand, within HER17_RS00815 at 190.707 kb on - strand, within HER17_RS00815 at 190.801 kb on + strand, within HER17_RS00815 at 190.802 kb on - strand, within HER17_RS00815 at 190.802 kb on - strand, within HER17_RS00815 at 190.848 kb on + strand, within HER17_RS00815 at 190.871 kb on + strand, within HER17_RS00815 at 190.871 kb on + strand, within HER17_RS00815 at 190.872 kb on - strand, within HER17_RS00815 at 190.872 kb on - strand, within HER17_RS00815 at 190.907 kb on + strand, within HER17_RS00815 at 190.908 kb on - strand, within HER17_RS00815 at 190.914 kb on - strand, within HER17_RS00815 at 190.914 kb on - strand, within HER17_RS00815 at 191.007 kb on + strand at 191.007 kb on + strand at 191.008 kb on - strand at 191.067 kb on + strand at 191.068 kb on - strand at 191.096 kb on - strand at 191.151 kb on + strand at 191.199 kb on - strand at 191.207 kb on + strand at 191.207 kb on + strand at 191.208 kb on - strand at 191.211 kb on + strand at 191.212 kb on - strand at 191.212 kb on - strand at 191.212 kb on - strand at 191.231 kb on + strand at 191.232 kb on - strand at 191.232 kb on - strand at 191.232 kb on - strand at 191.244 kb on + strand at 191.245 kb on - strand at 191.258 kb on + strand at 191.303 kb on - strand at 191.303 kb on - strand at 191.324 kb on + strand at 191.324 kb on + strand at 191.334 kb on - strand at 191.344 kb on + strand at 191.345 kb on - strand at 191.345 kb on - strand at 191.357 kb on + strand at 191.358 kb on - strand at 191.409 kb on - strand, within HER17_RS00820 at 191.423 kb on + strand, within HER17_RS00820 at 191.424 kb on - strand, within HER17_RS00820 at 191.481 kb on - strand, within HER17_RS00820 at 191.695 kb on + strand, within HER17_RS00820 at 191.829 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.831 kb on + strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.832 kb on - strand, within HER17_RS00820 at 191.859 kb on - strand, within HER17_RS00820 at 191.859 kb on - strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.879 kb on + strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.880 kb on - strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.883 kb on + strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.884 kb on - strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.956 kb on + strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 191.957 kb on - strand, within HER17_RS00820 at 192.072 kb on + strand, within HER17_RS00820 at 192.073 kb on - strand, within HER17_RS00820 at 192.119 kb on + strand, within HER17_RS00820 at 192.120 kb on - strand, within HER17_RS00820 at 192.167 kb on + strand, within HER17_RS00820 at 192.201 kb on + strand, within HER17_RS00820 at 192.202 kb on - strand, within HER17_RS00820 at 192.202 kb on - strand, within HER17_RS00820 at 192.248 kb on + strand at 192.249 kb on - strand at 192.250 kb on + strand at 192.297 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.311 kb on + strand at 192.312 kb on - strand at 192.312 kb on - strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.315 kb on + strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.316 kb on - strand at 192.323 kb on + strand at 192.323 kb on + strand at 192.324 kb on - strand at 192.324 kb on - strand at 192.357 kb on - strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.364 kb on + strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.365 kb on - strand at 192.435 kb on - strand at 192.446 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.460 kb on + strand at 192.551 kb on + strand at 192.551 kb on + strand at 192.552 kb on - strand at 192.552 kb on - strand at 192.900 kb on + strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 192.901 kb on - strand, within HER17_RS00825 at 193.174 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.279 kb on + strand, within HER17_RS00825
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 190,301 + -0.5 190,302 - +2.0 190,310 + +1.5 190,310 + -0.5 190,310 + +0.1 190,310 + -2.3 190,310 + +2.3 190,310 + -1.4 190,311 - +1.9 190,311 - +1.3 190,322 + -0.6 190,323 - +1.3 190,323 - -0.8 190,323 - -0.7 190,344 + -1.3 190,344 + -0.5 190,345 - -1.4 190,345 - -2.5 190,345 - -0.4 190,345 - +4.6 190,415 - HER17_RS00815 0.13 +1.7 190,503 + HER17_RS00815 0.24 -0.1 190,504 - HER17_RS00815 0.24 +1.8 190,616 + HER17_RS00815 0.39 -0.7 190,616 + HER17_RS00815 0.39 +0.7 190,660 - HER17_RS00815 0.45 +1.4 190,684 - HER17_RS00815 0.49 -0.3 190,684 - HER17_RS00815 0.49 +0.1 190,684 - HER17_RS00815 0.49 -0.1 190,706 + HER17_RS00815 0.52 +1.9 190,706 + HER17_RS00815 0.52 +1.2 190,707 - HER17_RS00815 0.52 +1.7 190,801 + HER17_RS00815 0.64 +0.5 190,802 - HER17_RS00815 0.64 +1.5 190,802 - HER17_RS00815 0.64 -0.5 190,848 + HER17_RS00815 0.71 -0.4 190,871 + HER17_RS00815 0.74 -0.1 190,871 + HER17_RS00815 0.74 -1.1 190,872 - HER17_RS00815 0.74 -0.8 190,872 - HER17_RS00815 0.74 -2.0 190,907 + HER17_RS00815 0.78 -0.8 190,908 - HER17_RS00815 0.79 +0.1 190,914 - HER17_RS00815 0.79 -2.1 190,914 - HER17_RS00815 0.79 -0.4 191,007 + -0.5 191,007 + +0.1 191,008 - +4.0 191,067 + +0.2 191,068 - -2.1 191,096 - -0.4 191,151 + -0.1 191,199 - +0.6 191,207 + -1.2 191,207 + +1.2 191,208 - +1.3 191,211 + -0.1 191,212 - +1.2 191,212 - -1.8 191,212 - +1.4 191,231 + +0.9 191,232 - -2.3 191,232 - +0.3 191,232 - +3.6 191,244 + +0.4 191,245 - -1.3 191,258 + -1.1 191,303 - -1.1 191,303 - +1.9 191,324 + +0.5 191,324 + +1.5 191,334 - -1.1 191,344 + +0.6 191,345 - +1.4 191,345 - -0.7 191,357 + +0.1 191,358 - +3.0 191,409 - HER17_RS00820 0.11 +1.2 191,423 + HER17_RS00820 0.12 -0.5 191,424 - HER17_RS00820 0.12 +2.2 191,481 - HER17_RS00820 0.18 +0.3 191,695 + HER17_RS00820 0.39 +1.2 191,829 + HER17_RS00820 0.52 -0.8 191,831 + HER17_RS00820 0.52 +1.4 191,831 + HER17_RS00820 0.52 -0.1 191,831 + HER17_RS00820 0.52 -0.7 191,831 + HER17_RS00820 0.52 +0.5 191,832 - HER17_RS00820 0.53 -0.8 191,832 - HER17_RS00820 0.53 -0.8 191,832 - HER17_RS00820 0.53 -0.5 191,832 - HER17_RS00820 0.53 +2.0 191,859 - HER17_RS00820 0.55 -0.0 191,859 - HER17_RS00820 0.55 +0.1 191,879 + HER17_RS00820 0.57 +0.8 191,879 + HER17_RS00820 0.57 -0.1 191,879 + HER17_RS00820 0.57 -1.5 191,879 + HER17_RS00820 0.57 +0.9 191,879 + HER17_RS00820 0.57 +0.5 191,880 - HER17_RS00820 0.57 -0.5 191,880 - HER17_RS00820 0.57 +0.1 191,880 - HER17_RS00820 0.57 +1.0 191,880 - HER17_RS00820 0.57 -2.4 191,880 - HER17_RS00820 0.57 +1.5 191,883 + HER17_RS00820 0.58 +0.7 191,883 + HER17_RS00820 0.58 +2.7 191,883 + HER17_RS00820 0.58 +0.5 191,883 + HER17_RS00820 0.58 +2.5 191,884 - HER17_RS00820 0.58 +1.5 191,884 - HER17_RS00820 0.58 -0.8 191,884 - HER17_RS00820 0.58 -1.2 191,956 + HER17_RS00820 0.65 -0.7 191,956 + HER17_RS00820 0.65 -0.5 191,956 + HER17_RS00820 0.65 +0.7 191,956 + HER17_RS00820 0.65 +0.0 191,957 - HER17_RS00820 0.65 -0.5 191,957 - HER17_RS00820 0.65 +0.7 191,957 - HER17_RS00820 0.65 -2.3 191,957 - HER17_RS00820 0.65 +2.6 191,957 - HER17_RS00820 0.65 +0.9 191,957 - HER17_RS00820 0.65 -0.4 191,957 - HER17_RS00820 0.65 -0.5 191,957 - HER17_RS00820 0.65 -1.3 191,957 - HER17_RS00820 0.65 +0.1 192,072 + HER17_RS00820 0.76 -0.3 192,073 - HER17_RS00820 0.76 +1.3 192,119 + HER17_RS00820 0.81 -1.7 192,120 - HER17_RS00820 0.81 +0.7 192,167 + HER17_RS00820 0.86 +4.1 192,201 + HER17_RS00820 0.89 +0.5 192,202 - HER17_RS00820 0.89 -0.9 192,202 - HER17_RS00820 0.89 +0.9 192,248 + -0.8 192,249 - -1.6 192,250 + -1.7 192,297 + +4.6 192,311 + -1.8 192,311 + +0.7 192,311 + -0.5 192,311 + +0.5 192,312 - +1.9 192,312 - +0.2 192,315 + -0.2 192,315 + -1.8 192,315 + +1.8 192,315 + -0.6 192,316 - -1.6 192,316 - -1.0 192,316 - +1.3 192,316 - +0.7 192,323 + -2.2 192,323 + +0.7 192,324 - -0.5 192,324 - +1.1 192,357 - -0.5 192,364 + -0.1 192,364 + +0.4 192,364 + -0.6 192,364 + -1.5 192,364 + +0.9 192,364 + -1.7 192,364 + +1.3 192,364 + -0.4 192,365 - +2.5 192,365 - +2.6 192,365 - +0.9 192,365 - -0.7 192,365 - -0.3 192,435 - -0.1 192,446 + +1.2 192,460 + -2.6 192,460 + -1.3 192,460 + -0.1 192,460 + +0.5 192,460 + -1.0 192,551 + -0.5 192,551 + -0.1 192,552 - +0.5 192,552 - +1.7 192,900 + HER17_RS00825 0.22 -0.1 192,901 - HER17_RS00825 0.22 -1.2 192,901 - HER17_RS00825 0.22 -0.3 192,901 - HER17_RS00825 0.22 +4.6 192,901 - HER17_RS00825 0.22 -0.9 193,174 + HER17_RS00825 0.40 +0.9 193,178 + HER17_RS00825 0.40 -0.1 193,178 + HER17_RS00825 0.40 +0.5 193,178 + HER17_RS00825 0.40 -0.4 193,178 + HER17_RS00825 0.40 -1.1 193,279 + HER17_RS00825 0.47 -1.4
Or see this region's nucleotide sequence