Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00340 and HER17_RS00345 are separated by 41 nucleotides HER17_RS00345 and HER17_RS00350 are separated by 66 nucleotides
HER17_RS00340: HER17_RS00340 - hypothetical protein, at 77,676 to 78,653
_RS00340
HER17_RS00345: HER17_RS00345 - ketoacyl-ACP synthase III, at 78,695 to 79,675
_RS00345
HER17_RS00350: HER17_RS00350 - cellulose biosynthesis protein BcsC, at 79,742 to 83,311
_RS00350
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 77.732 kb on - strand at 77.758 kb on + strand at 77.758 kb on + strand at 77.764 kb on + strand at 77.852 kb on + strand, within HER17_RS00340 at 77.879 kb on - strand, within HER17_RS00340 at 77.879 kb on - strand, within HER17_RS00340 at 77.937 kb on - strand, within HER17_RS00340 at 77.941 kb on + strand, within HER17_RS00340 at 77.941 kb on + strand, within HER17_RS00340 at 77.941 kb on + strand, within HER17_RS00340 at 78.075 kb on + strand, within HER17_RS00340 at 78.075 kb on + strand, within HER17_RS00340 at 78.075 kb on + strand, within HER17_RS00340 at 78.076 kb on - strand, within HER17_RS00340 at 78.102 kb on + strand, within HER17_RS00340 at 78.223 kb on - strand, within HER17_RS00340 at 78.224 kb on + strand, within HER17_RS00340 at 78.262 kb on - strand, within HER17_RS00340 at 78.296 kb on - strand, within HER17_RS00340 at 78.299 kb on + strand, within HER17_RS00340 at 78.323 kb on + strand, within HER17_RS00340 at 78.341 kb on - strand, within HER17_RS00340 at 78.341 kb on - strand, within HER17_RS00340 at 78.341 kb on - strand, within HER17_RS00340 at 78.386 kb on + strand, within HER17_RS00340 at 78.390 kb on + strand, within HER17_RS00340 at 78.390 kb on + strand, within HER17_RS00340 at 78.474 kb on + strand, within HER17_RS00340 at 78.475 kb on - strand, within HER17_RS00340 at 78.652 kb on - strand at 78.654 kb on + strand at 78.726 kb on + strand at 78.727 kb on - strand at 78.738 kb on + strand at 78.738 kb on + strand at 78.804 kb on + strand, within HER17_RS00345 at 78.805 kb on - strand, within HER17_RS00345 at 78.807 kb on + strand, within HER17_RS00345 at 78.905 kb on - strand, within HER17_RS00345 at 79.029 kb on - strand, within HER17_RS00345 at 79.034 kb on - strand, within HER17_RS00345 at 79.060 kb on + strand, within HER17_RS00345 at 79.060 kb on + strand, within HER17_RS00345 at 79.078 kb on - strand, within HER17_RS00345 at 79.137 kb on - strand, within HER17_RS00345 at 79.137 kb on - strand, within HER17_RS00345 at 79.150 kb on + strand, within HER17_RS00345 at 79.150 kb on + strand, within HER17_RS00345 at 79.151 kb on - strand, within HER17_RS00345 at 79.151 kb on - strand, within HER17_RS00345 at 79.151 kb on - strand, within HER17_RS00345 at 79.155 kb on - strand, within HER17_RS00345 at 79.155 kb on - strand, within HER17_RS00345 at 79.170 kb on - strand, within HER17_RS00345 at 79.198 kb on - strand, within HER17_RS00345 at 79.203 kb on + strand, within HER17_RS00345 at 79.210 kb on - strand, within HER17_RS00345 at 79.309 kb on + strand, within HER17_RS00345 at 79.310 kb on - strand, within HER17_RS00345 at 79.310 kb on - strand, within HER17_RS00345 at 79.369 kb on + strand, within HER17_RS00345 at 79.370 kb on - strand, within HER17_RS00345 at 79.392 kb on + strand, within HER17_RS00345 at 79.424 kb on - strand, within HER17_RS00345 at 79.435 kb on + strand, within HER17_RS00345 at 79.435 kb on + strand, within HER17_RS00345 at 79.436 kb on - strand, within HER17_RS00345 at 79.486 kb on + strand, within HER17_RS00345 at 79.555 kb on + strand, within HER17_RS00345 at 79.556 kb on - strand, within HER17_RS00345 at 79.573 kb on - strand, within HER17_RS00345 at 79.590 kb on + strand at 79.599 kb on + strand at 79.671 kb on - strand at 79.690 kb on + strand at 79.691 kb on - strand at 79.700 kb on + strand at 79.700 kb on + strand at 79.700 kb on + strand at 79.700 kb on + strand at 79.701 kb on - strand at 79.743 kb on + strand at 79.743 kb on + strand at 79.743 kb on + strand at 79.747 kb on + strand at 79.747 kb on + strand at 79.748 kb on - strand at 79.815 kb on + strand at 79.824 kb on + strand at 79.825 kb on - strand at 79.825 kb on - strand at 79.848 kb on + strand at 79.848 kb on + strand at 79.849 kb on - strand at 79.849 kb on - strand at 80.100 kb on + strand, within HER17_RS00350 at 80.101 kb on - strand, within HER17_RS00350 at 80.101 kb on - strand, within HER17_RS00350 at 80.127 kb on + strand, within HER17_RS00350 at 80.127 kb on + strand, within HER17_RS00350 at 80.128 kb on - strand, within HER17_RS00350 at 80.128 kb on - strand, within HER17_RS00350 at 80.128 kb on - strand, within HER17_RS00350 at 80.128 kb on - strand, within HER17_RS00350 at 80.142 kb on + strand, within HER17_RS00350 at 80.142 kb on + strand, within HER17_RS00350 at 80.143 kb on - strand, within HER17_RS00350 at 80.143 kb on - strand, within HER17_RS00350 at 80.240 kb on - strand, within HER17_RS00350 at 80.250 kb on + strand, within HER17_RS00350 at 80.250 kb on + strand, within HER17_RS00350 at 80.250 kb on + strand, within HER17_RS00350 at 80.250 kb on + strand, within HER17_RS00350 at 80.251 kb on - strand, within HER17_RS00350 at 80.251 kb on - strand, within HER17_RS00350 at 80.251 kb on - strand, within HER17_RS00350 at 80.251 kb on - strand, within HER17_RS00350 at 80.251 kb on - strand, within HER17_RS00350 at 80.253 kb on + strand, within HER17_RS00350 at 80.253 kb on + strand, within HER17_RS00350 at 80.253 kb on + strand, within HER17_RS00350 at 80.254 kb on - strand, within HER17_RS00350 at 80.254 kb on - strand, within HER17_RS00350 at 80.254 kb on - strand, within HER17_RS00350 at 80.256 kb on + strand, within HER17_RS00350 at 80.257 kb on - strand, within HER17_RS00350 at 80.257 kb on - strand, within HER17_RS00350 at 80.300 kb on - strand, within HER17_RS00350 at 80.358 kb on + strand, within HER17_RS00350 at 80.404 kb on + strand, within HER17_RS00350 at 80.511 kb on + strand, within HER17_RS00350 at 80.512 kb on - strand, within HER17_RS00350
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 77,732 - +0.9 77,758 + +1.0 77,758 + +0.1 77,764 + +1.1 77,852 + HER17_RS00340 0.18 +0.5 77,879 - HER17_RS00340 0.21 +1.0 77,879 - HER17_RS00340 0.21 +1.5 77,937 - HER17_RS00340 0.27 -0.8 77,941 + HER17_RS00340 0.27 -1.1 77,941 + HER17_RS00340 0.27 +0.1 77,941 + HER17_RS00340 0.27 +0.6 78,075 + HER17_RS00340 0.41 +2.0 78,075 + HER17_RS00340 0.41 -0.5 78,075 + HER17_RS00340 0.41 -0.0 78,076 - HER17_RS00340 0.41 -2.2 78,102 + HER17_RS00340 0.44 -1.3 78,223 - HER17_RS00340 0.56 +0.3 78,224 + HER17_RS00340 0.56 +0.6 78,262 - HER17_RS00340 0.60 -0.2 78,296 - HER17_RS00340 0.63 +0.6 78,299 + HER17_RS00340 0.64 +1.9 78,323 + HER17_RS00340 0.66 +1.5 78,341 - HER17_RS00340 0.68 -0.3 78,341 - HER17_RS00340 0.68 -0.2 78,341 - HER17_RS00340 0.68 -2.5 78,386 + HER17_RS00340 0.73 -0.5 78,390 + HER17_RS00340 0.73 +0.1 78,390 + HER17_RS00340 0.73 -0.3 78,474 + HER17_RS00340 0.82 -1.5 78,475 - HER17_RS00340 0.82 -1.1 78,652 - +1.8 78,654 + -1.4 78,726 + +1.0 78,727 - +0.3 78,738 + -0.3 78,738 + +0.1 78,804 + HER17_RS00345 0.11 -0.1 78,805 - HER17_RS00345 0.11 -0.3 78,807 + HER17_RS00345 0.11 -2.6 78,905 - HER17_RS00345 0.21 +3.3 79,029 - HER17_RS00345 0.34 +0.0 79,034 - HER17_RS00345 0.35 -0.8 79,060 + HER17_RS00345 0.37 +1.3 79,060 + HER17_RS00345 0.37 +1.5 79,078 - HER17_RS00345 0.39 -0.6 79,137 - HER17_RS00345 0.45 +2.6 79,137 - HER17_RS00345 0.45 -1.2 79,150 + HER17_RS00345 0.46 -1.5 79,150 + HER17_RS00345 0.46 -1.5 79,151 - HER17_RS00345 0.46 +0.1 79,151 - HER17_RS00345 0.46 -1.0 79,151 - HER17_RS00345 0.46 -1.6 79,155 - HER17_RS00345 0.47 +0.5 79,155 - HER17_RS00345 0.47 +0.5 79,170 - HER17_RS00345 0.48 +0.5 79,198 - HER17_RS00345 0.51 -0.5 79,203 + HER17_RS00345 0.52 +2.3 79,210 - HER17_RS00345 0.52 +0.8 79,309 + HER17_RS00345 0.63 +1.5 79,310 - HER17_RS00345 0.63 -0.3 79,310 - HER17_RS00345 0.63 +1.5 79,369 + HER17_RS00345 0.69 +0.0 79,370 - HER17_RS00345 0.69 +0.5 79,392 + HER17_RS00345 0.71 +1.4 79,424 - HER17_RS00345 0.74 +1.1 79,435 + HER17_RS00345 0.75 +0.4 79,435 + HER17_RS00345 0.75 -0.1 79,436 - HER17_RS00345 0.76 +1.4 79,486 + HER17_RS00345 0.81 -0.0 79,555 + HER17_RS00345 0.88 +0.4 79,556 - HER17_RS00345 0.88 -2.2 79,573 - HER17_RS00345 0.90 -0.3 79,590 + +2.5 79,599 + +1.5 79,671 - +2.0 79,690 + +0.0 79,691 - -1.5 79,700 + +1.2 79,700 + +0.4 79,700 + -0.1 79,700 + -0.1 79,701 - -1.5 79,743 + -0.7 79,743 + -0.1 79,743 + +0.4 79,747 + -1.5 79,747 + -1.8 79,748 - -1.7 79,815 + +0.6 79,824 + +0.0 79,825 - -0.5 79,825 - +1.5 79,848 + +1.4 79,848 + +1.5 79,849 - -0.6 79,849 - -1.4 80,100 + HER17_RS00350 0.10 +0.5 80,101 - HER17_RS00350 0.10 -0.3 80,101 - HER17_RS00350 0.10 -2.5 80,127 + HER17_RS00350 0.11 +0.5 80,127 + HER17_RS00350 0.11 +0.5 80,128 - HER17_RS00350 0.11 -0.3 80,128 - HER17_RS00350 0.11 -2.3 80,128 - HER17_RS00350 0.11 -1.4 80,128 - HER17_RS00350 0.11 +0.1 80,142 + HER17_RS00350 0.11 -0.5 80,142 + HER17_RS00350 0.11 +0.6 80,143 - HER17_RS00350 0.11 +0.0 80,143 - HER17_RS00350 0.11 +0.5 80,240 - HER17_RS00350 0.14 +0.1 80,250 + HER17_RS00350 0.14 +3.6 80,250 + HER17_RS00350 0.14 -0.6 80,250 + HER17_RS00350 0.14 -0.6 80,250 + HER17_RS00350 0.14 -0.6 80,251 - HER17_RS00350 0.14 -1.2 80,251 - HER17_RS00350 0.14 -1.2 80,251 - HER17_RS00350 0.14 +4.1 80,251 - HER17_RS00350 0.14 +1.9 80,251 - HER17_RS00350 0.14 +2.4 80,253 + HER17_RS00350 0.14 -3.0 80,253 + HER17_RS00350 0.14 +0.2 80,253 + HER17_RS00350 0.14 +2.2 80,254 - HER17_RS00350 0.14 -1.8 80,254 - HER17_RS00350 0.14 -0.8 80,254 - HER17_RS00350 0.14 -0.1 80,256 + HER17_RS00350 0.14 +0.5 80,257 - HER17_RS00350 0.14 +0.8 80,257 - HER17_RS00350 0.14 +0.7 80,300 - HER17_RS00350 0.16 -0.4 80,358 + HER17_RS00350 0.17 +0.2 80,404 + HER17_RS00350 0.19 -1.8 80,511 + HER17_RS00350 0.22 -0.6 80,512 - HER17_RS00350 0.22 +0.6
Or see this region's nucleotide sequence