Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21070

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,711,958	-		HER17_RS21065	0.34	+0.3
4,711,958	-		HER17_RS21065	0.34	-2.6
4,712,080	-		HER17_RS21065	0.44	-0.4
4,712,231	+		HER17_RS21065	0.57	+1.2
4,712,232	-		HER17_RS21065	0.57	+0.2
4,712,242	-		HER17_RS21065	0.58	-0.9
4,712,267	+		HER17_RS21065	0.60	+1.0
4,712,267	+		HER17_RS21065	0.60	+0.0
4,712,268	-		HER17_RS21065	0.60	+0.7
4,712,282	+		HER17_RS21065	0.61	-0.3
4,712,282	+		HER17_RS21065	0.61	+5.1
4,712,363	+		HER17_RS21065	0.68	-1.6
4,712,364	-		HER17_RS21065	0.68	+2.2
4,712,403	+		HER17_RS21065	0.72	-0.1
4,712,403	+		HER17_RS21065	0.72	-0.1
4,712,403	+		HER17_RS21065	0.72	-0.4
4,712,426	+		HER17_RS21065	0.74	+0.2
4,712,426	+		HER17_RS21065	0.74	-0.4
4,712,426	+		HER17_RS21065	0.74	-0.7
4,712,426	+		HER17_RS21065	0.74	+0.7
4,712,426	+		HER17_RS21065	0.74	-2.0
4,712,426	+		HER17_RS21065	0.74	+1.7
4,712,426	+		HER17_RS21065	0.74	-1.5
4,712,426	+		HER17_RS21065	0.74	+1.0
4,712,426	+		HER17_RS21065	0.74	-0.8
4,712,427	-		HER17_RS21065	0.74	+0.1
4,712,427	-		HER17_RS21065	0.74	+1.5
4,712,427	-		HER17_RS21065	0.74	-0.5
4,712,427	-		HER17_RS21065	0.74	+0.2
4,712,427	-		HER17_RS21065	0.74	+1.7
4,712,427	-		HER17_RS21065	0.74	+2.0
4,712,431	-		HER17_RS21065	0.74	-1.1
4,712,431	-		HER17_RS21065	0.74	-0.6
4,712,443	-		HER17_RS21065	0.75	+0.3
4,712,443	-		HER17_RS21065	0.75	-1.0
4,712,444	+		HER17_RS21065	0.75	-0.3
4,712,444	+		HER17_RS21065	0.75	-1.5
4,712,445	-		HER17_RS21065	0.75	+1.9
4,712,445	-		HER17_RS21065	0.75	-1.9
4,712,445	-		HER17_RS21065	0.75	+2.6
4,712,445	-		HER17_RS21065	0.75	-1.4
4,712,445	-		HER17_RS21065	0.75	-2.3
4,712,445	-		HER17_RS21065	0.75	+0.4
4,712,445	-		HER17_RS21065	0.75	-1.1
4,712,445	-		HER17_RS21065	0.75	-1.0
4,712,445	-		HER17_RS21065	0.75	+2.2
4,712,445	-		HER17_RS21065	0.75	-0.3
4,712,477	+		HER17_RS21065	0.78	+1.0
4,712,530	-		HER17_RS21065	0.82	-1.8
4,712,587	-		HER17_RS21065	0.87	-1.3
4,712,647	+				-0.3
4,712,651	+				-0.3
4,712,684	+				-1.7
4,712,684	+				-0.4
4,712,685	-				-3.2
4,712,773	-				+0.7
4,712,773	-				-0.2
4,712,791	+				+0.9
4,712,792	-				-0.5
4,712,792	-				-2.1
4,712,792	-				-0.2
4,712,792	-				+1.9
4,712,830	-				-0.1
4,712,876	+				+2.2
4,712,877	-				-0.8
4,712,941	-				+1.3
4,712,941	-				-0.5
4,712,941	-				-0.1
4,712,941	-				+1.6
4,712,998	+		HER17_RS21070	0.11	+1.9
4,712,998	+		HER17_RS21070	0.11	+0.3
4,712,998	+		HER17_RS21070	0.11	+0.2
4,712,998	+		HER17_RS21070	0.11	-0.8
4,712,998	+		HER17_RS21070	0.11	+0.8
4,712,999	-		HER17_RS21070	0.11	+0.3
4,712,999	-		HER17_RS21070	0.11	+1.1
4,713,250	-		HER17_RS21070	0.33	-0.1
4,713,250	-		HER17_RS21070	0.33	+1.0
4,713,250	-		HER17_RS21070	0.33	+0.1
4,713,357	+		HER17_RS21070	0.43	-0.3
4,713,423	-		HER17_RS21070	0.49	-0.7
4,713,434	+		HER17_RS21070	0.50	-0.5
4,713,475	+		HER17_RS21070	0.53	+0.6
4,713,486	-		HER17_RS21070	0.54	-0.3
4,713,505	+		HER17_RS21070	0.56	-0.7
4,713,528	+		HER17_RS21070	0.58	-0.4
4,713,528	+		HER17_RS21070	0.58	+0.8
4,713,528	+		HER17_RS21070	0.58	-0.5
4,713,528	+		HER17_RS21070	0.58	+0.3
4,713,529	-		HER17_RS21070	0.58	-0.4
4,713,529	-		HER17_RS21070	0.58	-0.8
4,713,776	+		HER17_RS21070	0.80	+4.0
4,713,820	+		HER17_RS21070	0.84	-0.9
4,713,821	-		HER17_RS21070	0.84	+0.2
4,713,835	+		HER17_RS21070	0.85	+2.4
4,713,903	+				+0.0
4,713,921	+				-1.4
4,713,921	+				-0.6
4,713,921	+				+0.1
4,713,921	+				-1.8
4,713,921	+				-1.4
4,713,921	+				-1.0
4,713,922	-				+0.9
4,713,922	-				+1.8
4,713,922	-				+0.2
4,713,966	+				-0.7
4,713,966	+				-1.4
4,713,967	-				+0.7
4,713,967	-				+0.6
4,713,967	-				+0.4
4,713,967	-				+0.9
4,714,219	-		HER17_RS21075	0.12	+1.2
4,714,238	+		HER17_RS21075	0.13	+0.6
4,714,238	+		HER17_RS21075	0.13	+1.4
4,714,238	+		HER17_RS21075	0.13	-0.5
4,714,240	+		HER17_RS21075	0.13	+0.9
4,714,240	+		HER17_RS21075	0.13	-0.9
4,714,240	+		HER17_RS21075	0.13	-0.6
4,714,250	-		HER17_RS21075	0.14	+0.0
4,714,250	-		HER17_RS21075	0.14	+0.1
4,714,262	+		HER17_RS21075	0.15	+0.5
4,714,322	+		HER17_RS21075	0.19	-0.9
4,714,535	+		HER17_RS21075	0.33	+0.2
4,714,535	+		HER17_RS21075	0.33	+0.4
4,714,535	+		HER17_RS21075	0.33	-0.8
4,714,536	-		HER17_RS21075	0.33	-1.8
4,714,536	-		HER17_RS21075	0.33	-2.1
4,714,604	+		HER17_RS21075	0.37	+0.9
4,714,604	+		HER17_RS21075	0.37	+0.1
4,714,604	+		HER17_RS21075	0.37	-0.1
4,714,605	-		HER17_RS21075	0.37	-1.5
4,714,605	-		HER17_RS21075	0.37	-2.1
4,714,613	+		HER17_RS21075	0.38	+0.2
4,714,613	+		HER17_RS21075	0.38	+2.3
4,714,614	-		HER17_RS21075	0.38	-0.4
4,714,674	-		HER17_RS21075	0.42	-2.1
4,714,755	-		HER17_RS21075	0.47	-0.7
4,714,797	+		HER17_RS21075	0.50	+1.8
4,714,801	-		HER17_RS21075	0.50	+1.1
4,714,982	+		HER17_RS21075	0.62	-0.8
4,714,983	-		HER17_RS21075	0.62	+0.4
4,714,984	+		HER17_RS21075	0.62	-0.1
4,714,984	+		HER17_RS21075	0.62	-0.9
4,714,985	-		HER17_RS21075	0.62	+1.2
4,714,985	-		HER17_RS21075	0.62	-0.4
4,714,985	-		HER17_RS21075	0.62	-2.4
4,714,985	-		HER17_RS21075	0.62	+2.9
4,714,985	-		HER17_RS21075	0.62	+0.6
4,714,985	-		HER17_RS21075	0.62	+2.8
4,714,985	-		HER17_RS21075	0.62	+3.1
4,714,985	-		HER17_RS21075	0.62	-0.1
4,714,985	-		HER17_RS21075	0.62	+0.8