Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20505

Experiment: Tuber-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS20495 and HER17_RS20500 are separated by 37 nucleotidesHER17_RS20500 and HER17_RS20505 overlap by 4 nucleotidesHER17_RS20505 and HER17_RS20510 are separated by 154 nucleotidesHER17_RS20510 and HER17_RS20515 are separated by 130 nucleotides HER17_RS20495: HER17_RS20495 - type I pantothenate kinase, at 4,591,979 to 4,592,929 _RS20495 HER17_RS20500: HER17_RS20500 - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 4,592,967 to 4,593,926 _RS20500 HER17_RS20505: HER17_RS20505 - UDP-N-acetylmuramate dehydrogenase, at 4,593,923 to 4,594,960 _RS20505 HER17_RS20510: HER17_RS20510 - 5S ribosomal RNA, at 4,595,115 to 4,595,230 _RS20510 HER17_RS20515: HER17_RS20515 - 23S ribosomal RNA, at 4,595,361 to 4,598,277 _RS20515 Position (kb) 4593 4594 4595Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4592.942 kb on - strandat 4594.974 kb on - strandat 4594.977 kb on - strandat 4594.993 kb on - strandat 4594.993 kb on - strandat 4594.993 kb on - strandat 4594.993 kb on - strandat 4594.993 kb on - strandat 4594.993 kb on - strandat 4594.993 kb on - strandat 4594.993 kb on - strandat 4594.998 kb on - strandat 4595.007 kb on - strandat 4595.007 kb on - strandat 4595.007 kb on - strandat 4595.007 kb on - strandat 4595.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
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4,592,942 - +2.2
4,594,974 - +0.8
4,594,977 - +0.1
4,594,993 - -3.8
4,594,993 - -0.3
4,594,993 - +0.6
4,594,993 - +1.2
4,594,993 - -0.5
4,594,993 - +1.8
4,594,993 - -1.1
4,594,993 - -1.9
4,594,998 - -0.9
4,595,007 - +3.4
4,595,007 - +2.2
4,595,007 - +0.1
4,595,007 - -2.3
4,595,007 - -0.1

Or see this region's nucleotide sequence