Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS20495 and HER17_RS20500 are separated by 37 nucleotides HER17_RS20500 and HER17_RS20505 overlap by 4 nucleotides HER17_RS20505 and HER17_RS20510 are separated by 154 nucleotides HER17_RS20510 and HER17_RS20515 are separated by 130 nucleotides
HER17_RS20495: HER17_RS20495 - type I pantothenate kinase, at 4,591,979 to 4,592,929
_RS20495
HER17_RS20500: HER17_RS20500 - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 4,592,967 to 4,593,926
_RS20500
HER17_RS20505: HER17_RS20505 - UDP-N-acetylmuramate dehydrogenase, at 4,593,923 to 4,594,960
_RS20505
HER17_RS20510: HER17_RS20510 - 5S ribosomal RNA, at 4,595,115 to 4,595,230
_RS20510
HER17_RS20515: HER17_RS20515 - 23S ribosomal RNA, at 4,595,361 to 4,598,277
_RS20515
Position (kb)
4593
4594
4595 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4592.942 kb on - strand at 4594.974 kb on - strand at 4594.977 kb on - strand at 4594.993 kb on - strand at 4594.993 kb on - strand at 4594.993 kb on - strand at 4594.993 kb on - strand at 4594.993 kb on - strand at 4594.993 kb on - strand at 4594.993 kb on - strand at 4594.993 kb on - strand at 4594.998 kb on - strand at 4595.007 kb on - strand at 4595.007 kb on - strand at 4595.007 kb on - strand at 4595.007 kb on - strand at 4595.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 4,592,942 - +2.2 4,594,974 - +0.8 4,594,977 - +0.1 4,594,993 - -3.8 4,594,993 - -0.3 4,594,993 - +0.6 4,594,993 - +1.2 4,594,993 - -0.5 4,594,993 - +1.8 4,594,993 - -1.1 4,594,993 - -1.9 4,594,998 - -0.9 4,595,007 - +3.4 4,595,007 - +2.2 4,595,007 - +0.1 4,595,007 - -2.3 4,595,007 - -0.1
Or see this region's nucleotide sequence