Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20015

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,493,870	+				+0.1
4,493,981	+		HER17_RS20005	0.27	+1.5
4,493,982	-		HER17_RS20005	0.27	+0.1
4,494,010	-		HER17_RS20005	0.37	+0.7
4,494,054	-		HER17_RS20005	0.52	+0.8
4,494,073	+		HER17_RS20005	0.58	-1.1
4,494,073	+		HER17_RS20005	0.58	+0.8
4,494,074	-		HER17_RS20005	0.59	+1.6
4,494,326	+		HER17_RS20010	0.19	+0.9
4,494,326	+		HER17_RS20010	0.19	-0.0
4,494,327	-		HER17_RS20010	0.19	+0.5
4,494,383	+		HER17_RS20010	0.28	-1.5
4,494,383	+		HER17_RS20010	0.28	-1.7
4,494,384	-		HER17_RS20010	0.28	-2.3
4,494,384	-		HER17_RS20010	0.28	-0.5
4,494,461	+		HER17_RS20010	0.40	-0.4
4,494,493	+		HER17_RS20010	0.45	-1.6
4,494,494	-		HER17_RS20010	0.46	-1.4
4,494,494	-		HER17_RS20010	0.46	-0.2
4,494,506	+		HER17_RS20010	0.47	+0.1
4,494,508	+		HER17_RS20010	0.48	-0.5
4,494,508	+		HER17_RS20010	0.48	-0.8
4,494,508	+		HER17_RS20010	0.48	-1.9
4,494,508	+		HER17_RS20010	0.48	-1.2
4,494,508	+		HER17_RS20010	0.48	-0.3
4,494,508	+		HER17_RS20010	0.48	+0.3
4,494,508	+		HER17_RS20010	0.48	-0.8
4,494,508	+		HER17_RS20010	0.48	-2.1
4,494,509	-		HER17_RS20010	0.48	+1.5
4,494,509	-		HER17_RS20010	0.48	+0.1
4,494,544	+		HER17_RS20010	0.53	+0.7
4,494,545	-		HER17_RS20010	0.54	-0.1
4,494,565	+		HER17_RS20010	0.57	+0.1
4,494,566	-		HER17_RS20010	0.57	-0.3
4,494,598	+		HER17_RS20010	0.62	-1.1
4,494,598	+		HER17_RS20010	0.62	-0.5
4,494,599	-		HER17_RS20010	0.62	+0.2
4,494,599	-		HER17_RS20010	0.62	-1.0
4,494,599	-		HER17_RS20010	0.62	-0.2
4,494,602	-		HER17_RS20010	0.63	-2.2
4,494,629	-		HER17_RS20010	0.67	+0.2
4,494,643	+		HER17_RS20010	0.69	+0.0
4,494,643	+		HER17_RS20010	0.69	+0.5
4,494,644	-		HER17_RS20010	0.69	-1.7
4,494,644	-		HER17_RS20010	0.69	+0.8
4,494,644	-		HER17_RS20010	0.69	-0.0
4,494,663	+		HER17_RS20010	0.72	-0.9
4,494,663	+		HER17_RS20010	0.72	+1.6
4,494,663	+		HER17_RS20010	0.72	-1.5
4,494,664	-		HER17_RS20010	0.73	-0.1
4,494,664	-		HER17_RS20010	0.73	+0.4
4,494,664	-		HER17_RS20010	0.73	-2.7
4,494,664	-		HER17_RS20010	0.73	-0.9
4,494,664	-		HER17_RS20010	0.73	-1.5
4,494,664	-		HER17_RS20010	0.73	+2.3
4,494,668	+		HER17_RS20010	0.73	-1.7
4,494,668	+		HER17_RS20010	0.73	+1.1
4,494,669	-		HER17_RS20010	0.73	-1.6
4,494,669	-		HER17_RS20010	0.73	+0.7
4,494,671	+		HER17_RS20010	0.74	-2.5
4,494,672	-		HER17_RS20010	0.74	-0.2
4,494,672	-		HER17_RS20010	0.74	+0.3
4,494,679	+		HER17_RS20010	0.75	-1.4
4,494,680	-		HER17_RS20010	0.75	+0.1
4,494,831	-				-0.9
4,494,831	-				+2.0
4,494,843	-				+0.3
4,494,850	+				-1.2
4,494,850	+				+1.3
4,494,850	+				+0.1
4,494,850	+				-0.2
4,494,850	+				+1.0
4,494,850	+				-1.4
4,494,850	+				+0.3
4,494,850	+				-0.3
4,494,850	+				+1.8
4,494,850	+				+2.5
4,494,850	+				-1.5
4,494,851	-				+1.4
4,494,851	-				+0.2
4,494,851	-				+3.1
4,494,851	-				+0.9
4,494,853	+				+0.7
4,494,853	+				-0.9
4,494,938	+		HER17_RS20015	0.15	-0.1
4,494,938	+		HER17_RS20015	0.15	+1.1
4,494,939	-		HER17_RS20015	0.15	-1.7
4,494,962	+		HER17_RS20015	0.19	-1.2
4,494,962	+		HER17_RS20015	0.19	-0.9
4,494,962	+		HER17_RS20015	0.19	-0.2
4,494,962	+		HER17_RS20015	0.19	-0.4
4,494,962	+		HER17_RS20015	0.19	-0.0
4,494,962	+		HER17_RS20015	0.19	+1.7
4,494,962	+		HER17_RS20015	0.19	-0.9
4,494,962	+		HER17_RS20015	0.19	-1.1
4,494,962	+		HER17_RS20015	0.19	+0.1
4,494,962	+		HER17_RS20015	0.19	-0.7
4,494,962	+		HER17_RS20015	0.19	+0.7
4,494,963	-		HER17_RS20015	0.20	+1.1
4,494,963	-		HER17_RS20015	0.20	+0.7
4,494,963	-		HER17_RS20015	0.20	+0.3
4,494,963	-		HER17_RS20015	0.20	-1.5
4,494,963	-		HER17_RS20015	0.20	+2.1
4,494,963	-		HER17_RS20015	0.20	-1.3
4,494,963	-		HER17_RS20015	0.20	+0.6
4,494,963	-		HER17_RS20015	0.20	+1.2
4,494,963	-		HER17_RS20015	0.20	+0.7
4,494,963	-		HER17_RS20015	0.20	+0.0
4,494,964	+		HER17_RS20015	0.20	+0.0
4,494,964	+		HER17_RS20015	0.20	-0.2
4,494,964	+		HER17_RS20015	0.20	+2.7
4,494,965	-		HER17_RS20015	0.20	-0.2
4,494,966	+		HER17_RS20015	0.20	-0.1
4,494,966	+		HER17_RS20015	0.20	+1.0
4,494,967	-		HER17_RS20015	0.20	-1.5
4,494,967	-		HER17_RS20015	0.20	-0.6
4,495,074	-		HER17_RS20015	0.39	-1.9
4,495,112	+		HER17_RS20015	0.46	+1.2
4,495,134	-		HER17_RS20015	0.50	+0.1
4,495,134	-		HER17_RS20015	0.50	+0.1
4,495,142	+		HER17_RS20015	0.51	+0.2
4,495,142	+		HER17_RS20015	0.51	+0.3
4,495,143	-		HER17_RS20015	0.51	+1.2
4,495,143	-		HER17_RS20015	0.51	+1.9
4,495,150	+		HER17_RS20015	0.53	-0.0
4,495,150	+		HER17_RS20015	0.53	+0.4
4,495,163	+		HER17_RS20015	0.55	-0.6
4,495,186	+		HER17_RS20015	0.59	-1.3
4,495,187	-		HER17_RS20015	0.59	+2.0
4,495,300	+		HER17_RS20015	0.79	+1.5
4,495,300	+		HER17_RS20015	0.79	-1.5
4,495,379	+				-0.3
4,495,379	+				-1.7
4,495,380	-				+2.1
4,495,380	-				-1.7
4,495,582	+		HER17_RS20020	0.20	-0.9
4,495,582	+		HER17_RS20020	0.20	-0.5
4,495,582	+		HER17_RS20020	0.20	-0.5
4,495,587	+		HER17_RS20020	0.21	-1.8
4,495,962	+		HER17_RS20020	0.69	-1.7
4,495,964	+		HER17_RS20020	0.69	-1.0
4,495,964	+		HER17_RS20020	0.69	-0.8
4,495,964	+		HER17_RS20020	0.69	-1.6
4,495,964	+		HER17_RS20020	0.69	+0.1
4,495,964	+		HER17_RS20020	0.69	-0.3
4,495,965	-		HER17_RS20020	0.69	+2.2
4,495,982	+		HER17_RS20020	0.71	+0.7
4,495,990	+		HER17_RS20020	0.72	+0.1
4,495,991	-		HER17_RS20020	0.73	-0.5
4,496,060	+		HER17_RS20020	0.81	-0.7
4,496,061	-		HER17_RS20020	0.81	+0.0
4,496,121	+		HER17_RS20020	0.89	+0.1
4,496,200	+				-0.9
4,496,200	+				+0.9
4,496,200	+				-0.8
4,496,201	-				-1.1
4,496,201	-				+0.5
4,496,229	-				-0.4
4,496,229	-				+1.0
4,496,242	+				-0.9
4,496,242	+				+0.9
4,496,242	+				-0.5
4,496,243	-				-0.9
4,496,243	-				-0.7
4,496,243	-				+0.5
4,496,243	-				+1.2
4,496,244	+				+1.3
4,496,287	+				-2.0
4,496,320	+		HER17_RS20025	0.13	+0.0
4,496,320	+		HER17_RS20025	0.13	+1.1
4,496,320	+		HER17_RS20025	0.13	-0.5
4,496,320	+		HER17_RS20025	0.13	+1.3
4,496,321	-		HER17_RS20025	0.13	-0.3
4,496,321	-		HER17_RS20025	0.13	+0.2
4,496,321	-		HER17_RS20025	0.13	-2.5
4,496,377	+		HER17_RS20025	0.20	+0.1
4,496,377	+		HER17_RS20025	0.20	+0.2
4,496,378	-		HER17_RS20025	0.20	-0.6
4,496,378	-		HER17_RS20025	0.20	+0.4
4,496,378	-		HER17_RS20025	0.20	-1.6
4,496,378	-		HER17_RS20025	0.20	-0.5
4,496,379	+		HER17_RS20025	0.20	+0.2
4,496,379	+		HER17_RS20025	0.20	+0.4
4,496,379	+		HER17_RS20025	0.20	+0.1
4,496,379	+		HER17_RS20025	0.20	-0.3
4,496,379	+		HER17_RS20025	0.20	+0.1
4,496,379	+		HER17_RS20025	0.20	-1.7
4,496,380	-		HER17_RS20025	0.21	-0.5
4,496,380	-		HER17_RS20025	0.21	-1.3
4,496,380	-		HER17_RS20025	0.21	-0.7
4,496,380	-		HER17_RS20025	0.21	+0.1
4,496,380	-		HER17_RS20025	0.21	-0.8
4,496,411	+		HER17_RS20025	0.24	-0.7
4,496,411	+		HER17_RS20025	0.24	+1.3
4,496,412	-		HER17_RS20025	0.24	-1.1
4,496,412	-		HER17_RS20025	0.24	+0.5
4,496,412	-		HER17_RS20025	0.24	-0.9
4,496,412	-		HER17_RS20025	0.24	+0.4