Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19545

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,389,766	+		HER17_RS19535	0.44	+0.9
4,389,869	-		HER17_RS19535	0.60	-0.2
4,389,869	-		HER17_RS19535	0.60	+2.3
4,389,893	+		HER17_RS19535	0.64	-0.3
4,389,894	-		HER17_RS19535	0.64	-0.7
4,390,026	-		HER17_RS19535	0.84	-0.7
4,390,039	+		HER17_RS19535	0.86	+0.5
4,390,039	+		HER17_RS19535	0.86	-1.5
4,390,039	+		HER17_RS19535	0.86	-2.0
4,390,039	+		HER17_RS19535	0.86	+1.2
4,390,040	-		HER17_RS19535	0.86	-1.5
4,390,040	-		HER17_RS19535	0.86	-0.5
4,390,040	-		HER17_RS19535	0.86	-0.9
4,390,040	-		HER17_RS19535	0.86	+1.5
4,390,077	+				+0.4
4,390,078	-				-0.7
4,390,095	+				+0.8
4,390,110	+				-0.2
4,390,110	+				-0.9
4,390,113	+				-0.3
4,390,113	+				-1.3
4,390,113	+				-0.5
4,390,113	+				-0.2
4,390,113	+				+1.1
4,390,114	-				+0.1
4,390,114	-				-1.0
4,390,114	-				-2.2
4,390,120	-				-0.4
4,390,149	+				+1.7
4,390,149	+				+0.8
4,390,174	+				+0.2
4,390,180	+				+0.1
4,390,180	+				-1.5
4,390,180	+				-0.3
4,390,181	-				+0.6
4,390,181	-				-0.0
4,390,188	+				+0.0
4,390,188	+				-0.5
4,390,188	+				+0.5
4,390,189	-				-1.7
4,390,189	-				+0.1
4,390,189	-				-0.7
4,390,189	-				-0.5
4,390,192	+				+0.1
4,390,193	-				+0.1
4,390,193	-				+0.1
4,390,193	-				+0.7
4,390,193	-				+0.2
4,390,193	-				-2.2
4,390,193	-				-1.6
4,390,263	+				+1.5
4,390,263	+				-0.3
4,390,278	+		HER17_RS19540	0.13	-0.0
4,390,279	-		HER17_RS19540	0.13	-1.1
4,390,279	-		HER17_RS19540	0.13	+0.2
4,390,279	-		HER17_RS19540	0.13	+1.0
4,390,279	-		HER17_RS19540	0.13	+0.3
4,390,528	+		HER17_RS19540	0.66	-2.8
4,390,528	+		HER17_RS19540	0.66	-0.2
4,390,529	-		HER17_RS19540	0.66	-0.8
4,390,532	+		HER17_RS19540	0.67	+5.9
4,390,532	+		HER17_RS19540	0.67	-0.9
4,390,533	-		HER17_RS19540	0.67	-0.5
4,390,533	-		HER17_RS19540	0.67	-1.0
4,390,533	-		HER17_RS19540	0.67	+1.5
4,390,541	-		HER17_RS19540	0.69	+0.4
4,390,556	+		HER17_RS19540	0.72	-1.8
4,390,556	+		HER17_RS19540	0.72	+1.8
4,390,556	+		HER17_RS19540	0.72	-0.0
4,390,557	-		HER17_RS19540	0.72	-0.5
4,390,557	-		HER17_RS19540	0.72	-0.1
4,390,557	-		HER17_RS19540	0.72	-0.3
4,390,560	+		HER17_RS19540	0.73	+1.1
4,390,560	+		HER17_RS19540	0.73	+0.7
4,390,560	+		HER17_RS19540	0.73	+0.1
4,390,560	+		HER17_RS19540	0.73	+0.1
4,390,560	+		HER17_RS19540	0.73	-0.5
4,390,561	-		HER17_RS19540	0.73	-1.3
4,390,561	-		HER17_RS19540	0.73	-0.2
4,390,561	-		HER17_RS19540	0.73	-1.5
4,390,562	+		HER17_RS19540	0.73	-0.7
4,390,562	+		HER17_RS19540	0.73	-2.2
4,390,562	+		HER17_RS19540	0.73	+0.1
4,390,563	-		HER17_RS19540	0.74	+1.1
4,390,563	-		HER17_RS19540	0.74	-0.7
4,390,563	-		HER17_RS19540	0.74	+1.5
4,390,563	-		HER17_RS19540	0.74	-0.8
4,390,563	-		HER17_RS19540	0.74	-0.5
4,390,563	-		HER17_RS19540	0.74	+3.9
4,390,563	-		HER17_RS19540	0.74	-0.1
4,390,582	+		HER17_RS19540	0.78	+0.1
4,390,616	-		HER17_RS19540	0.85	-1.3
4,390,688	-				+0.9
4,390,688	-				-0.9
4,390,688	-				-0.9
4,390,688	-				+0.5
4,390,719	+				-1.2
4,390,720	-				-0.5
4,390,764	+		HER17_RS19545	0.15	+0.4
4,390,764	+		HER17_RS19545	0.15	-3.3
4,390,764	+		HER17_RS19545	0.15	+0.2
4,390,764	+		HER17_RS19545	0.15	-0.1
4,390,765	-		HER17_RS19545	0.15	-0.4
4,390,765	-		HER17_RS19545	0.15	-0.6
4,390,765	-		HER17_RS19545	0.15	-1.2
4,390,765	-		HER17_RS19545	0.15	-1.8
4,390,765	-		HER17_RS19545	0.15	+0.8
4,390,798	+		HER17_RS19545	0.23	-1.2
4,390,873	+		HER17_RS19545	0.40	-0.5
4,390,874	-		HER17_RS19545	0.40	+0.1
4,390,899	+		HER17_RS19545	0.45	+0.5
4,390,899	+		HER17_RS19545	0.45	-0.2
4,390,899	+		HER17_RS19545	0.45	-2.4
4,390,900	-		HER17_RS19545	0.46	+0.6
4,390,900	-		HER17_RS19545	0.46	-2.0
4,390,901	+		HER17_RS19545	0.46	-0.3
4,390,901	+		HER17_RS19545	0.46	-0.6
4,390,901	+		HER17_RS19545	0.46	+2.1
4,390,901	+		HER17_RS19545	0.46	-0.2
4,390,902	-		HER17_RS19545	0.46	+2.1
4,390,902	-		HER17_RS19545	0.46	-1.3
4,390,902	-		HER17_RS19545	0.46	-1.2
4,390,910	+		HER17_RS19545	0.48	-0.8
4,390,965	+		HER17_RS19545	0.60	-1.6
4,390,993	-		HER17_RS19545	0.66	-0.6
4,390,993	-		HER17_RS19545	0.66	-1.2
4,391,146	+				-1.7
4,391,146	+				-1.6
4,391,146	+				-1.0
4,391,146	+				+1.0
4,391,146	+				-3.2
4,391,146	+				-2.2
4,391,146	+				-1.2
4,391,146	+				-1.2
4,391,146	+				-0.6
4,391,147	-				-0.1
4,391,147	-				+0.5
4,391,147	-				+5.6
4,391,147	-				-0.3
4,391,175	-				-1.9
4,391,242	+				-0.5
4,391,242	+				+0.1
4,391,242	+				+0.8
4,391,242	+				-0.5
4,391,242	+				+0.4
4,391,243	-				+0.9
4,391,243	-				-0.3
4,391,243	-				+1.1
4,391,243	-				-0.7
4,391,243	-				+1.4
4,391,292	+				-0.4
4,391,292	+				-1.4
4,391,292	+				-1.2
4,391,293	-				+1.0
4,391,293	-				-0.5
4,391,293	-				+4.1
4,391,293	-				-1.5
4,391,347	+				+0.1
4,391,347	+				-0.2
4,391,348	-				+0.1
4,391,379	-				-0.5
4,391,425	+		HER17_RS19550	0.10	+0.3
4,391,426	-		HER17_RS19550	0.10	-2.2
4,391,540	+		HER17_RS19550	0.19	-0.9
4,391,541	-		HER17_RS19550	0.19	-0.5
4,391,541	-		HER17_RS19550	0.19	-0.9
4,391,543	+		HER17_RS19550	0.20	-0.2
4,391,543	+		HER17_RS19550	0.20	+1.3
4,391,544	-		HER17_RS19550	0.20	-3.2
4,391,649	-		HER17_RS19550	0.28	-1.7
4,391,649	-		HER17_RS19550	0.28	-1.5
4,391,711	-		HER17_RS19550	0.33	-1.3
4,391,711	-		HER17_RS19550	0.33	-0.1
4,391,804	+		HER17_RS19550	0.40	+1.5
4,391,804	+		HER17_RS19550	0.40	-0.7
4,391,826	-		HER17_RS19550	0.42	+0.2
4,391,826	-		HER17_RS19550	0.42	+0.8
4,391,826	-		HER17_RS19550	0.42	+1.2
4,391,845	+		HER17_RS19550	0.44	+0.3
4,391,955	+		HER17_RS19550	0.52	+0.1
4,391,956	-		HER17_RS19550	0.53	+0.7
4,391,956	-		HER17_RS19550	0.53	-2.0
4,391,973	+		HER17_RS19550	0.54	+0.6
4,391,994	-		HER17_RS19550	0.56	-2.3
4,391,994	-		HER17_RS19550	0.56	+0.6
4,392,077	-		HER17_RS19550	0.62	+0.1
4,392,090	+		HER17_RS19550	0.63	-1.0
4,392,091	-		HER17_RS19550	0.63	+2.7
4,392,120	+		HER17_RS19550	0.66	-0.5
4,392,121	-		HER17_RS19550	0.66	+0.1