Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15355

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
3,442,583	+		HER17_RS15350	0.53	-0.6
3,442,584	-		HER17_RS15350	0.53	-0.1
3,442,700	-		HER17_RS15350	0.59	-1.1
3,442,700	-		HER17_RS15350	0.59	+1.6
3,442,728	+		HER17_RS15350	0.61	+0.3
3,442,728	+		HER17_RS15350	0.61	-0.6
3,442,729	-		HER17_RS15350	0.61	+1.1
3,442,729	-		HER17_RS15350	0.61	-0.8
3,442,800	-		HER17_RS15350	0.65	+0.6
3,442,834	+		HER17_RS15350	0.67	+0.0
3,442,841	+		HER17_RS15350	0.67	-0.7
3,442,843	+		HER17_RS15350	0.67	-0.1
3,442,843	+		HER17_RS15350	0.67	-0.5
3,442,844	-		HER17_RS15350	0.67	+0.5
3,442,844	-		HER17_RS15350	0.67	+3.1
3,442,844	-		HER17_RS15350	0.67	-0.9
3,442,852	+		HER17_RS15350	0.68	-0.5
3,442,852	+		HER17_RS15350	0.68	-0.1
3,442,852	+		HER17_RS15350	0.68	+2.4
3,442,853	-		HER17_RS15350	0.68	+0.6
3,442,853	-		HER17_RS15350	0.68	+0.2
3,442,853	-		HER17_RS15350	0.68	-1.4
3,442,860	-		HER17_RS15350	0.68	-1.3
3,442,861	+		HER17_RS15350	0.68	-0.3
3,442,861	+		HER17_RS15350	0.68	+0.2
3,442,862	-		HER17_RS15350	0.68	-1.7
3,442,936	+		HER17_RS15350	0.73	-1.4
3,442,937	-		HER17_RS15350	0.73	+3.0
3,442,937	-		HER17_RS15350	0.73	+0.3
3,442,964	+		HER17_RS15350	0.74	+0.9
3,442,964	+		HER17_RS15350	0.74	+2.3
3,442,964	+		HER17_RS15350	0.74	-1.1
3,442,964	+		HER17_RS15350	0.74	+3.9
3,443,007	-		HER17_RS15350	0.77	+0.9
3,443,021	+		HER17_RS15350	0.77	+0.3
3,443,022	-		HER17_RS15350	0.77	-1.1
3,443,058	+		HER17_RS15350	0.79	-1.9
3,443,058	+		HER17_RS15350	0.79	-2.1
3,443,058	+		HER17_RS15350	0.79	-0.8
3,443,059	-		HER17_RS15350	0.80	-0.6
3,443,059	-		HER17_RS15350	0.80	-0.7
3,443,065	+		HER17_RS15350	0.80	-1.7
3,443,065	+		HER17_RS15350	0.80	+0.5
3,443,066	-		HER17_RS15350	0.80	-0.7
3,443,068	+		HER17_RS15350	0.80	-2.7
3,443,068	+		HER17_RS15350	0.80	-0.3
3,443,069	-		HER17_RS15350	0.80	-0.2
3,443,098	+		HER17_RS15350	0.82	+0.7
3,443,098	+		HER17_RS15350	0.82	-0.8
3,443,098	+		HER17_RS15350	0.82	-0.3
3,443,098	+		HER17_RS15350	0.82	-1.1
3,443,099	-		HER17_RS15350	0.82	-1.4
3,443,117	+		HER17_RS15350	0.83	-3.1
3,443,152	-		HER17_RS15350	0.85	-0.9
3,443,157	+		HER17_RS15350	0.85	-1.9
3,443,158	-		HER17_RS15350	0.85	-0.9
3,443,205	-		HER17_RS15350	0.88	-1.1
3,443,218	-		HER17_RS15350	0.88	+1.2
3,443,267	+				+0.3
3,443,268	-				-0.3
3,443,268	-				+2.4
3,443,268	-				-0.1
3,443,290	+				+4.2
3,443,313	-				+1.3
3,443,313	-				+3.7
3,443,315	+				+0.9
3,443,315	+				+0.2
3,443,315	+				+1.4
3,443,316	-				+0.4
3,443,316	-				-0.1
3,443,316	-				-2.1
3,443,330	+				-1.6
3,443,365	+				-0.1
3,443,403	-				-1.1
3,443,508	+				+0.3
3,443,508	+				-0.1
3,443,553	+				-1.7
3,443,553	+				-1.2
3,443,553	+				+0.1
3,443,554	-				-0.1
3,443,554	-				+0.4
3,443,554	-				-1.1
3,443,554	-				-0.2
3,443,554	-				+0.4
3,443,574	+				+0.5
3,443,575	-				-1.4
3,443,575	-				+1.9
3,443,575	-				+1.0
3,443,575	-				-0.7
3,443,577	+				+0.3
3,443,577	+				+0.3
3,443,577	+				-1.1
3,443,577	+				+0.5
3,443,577	+				-1.9
3,443,577	+				-0.9
3,443,577	+				+0.8
3,443,577	+				+0.4
3,443,578	-				+0.9
3,443,578	-				-0.3
3,443,578	-				-0.3
3,443,578	-				+1.7
3,443,578	-				-0.8
3,443,581	+				+0.3
3,443,599	+				-1.4
3,443,600	-				-1.3
3,443,638	-				+0.5
3,443,772	+		HER17_RS15355	0.12	-0.3
3,443,773	-		HER17_RS15355	0.12	+0.6
3,443,828	-		HER17_RS15355	0.14	-0.6
3,443,837	-		HER17_RS15355	0.14	+0.1
3,443,837	-		HER17_RS15355	0.14	+0.8
3,443,848	-		HER17_RS15355	0.15	-0.7
3,443,848	-		HER17_RS15355	0.15	+1.9
3,443,851	+		HER17_RS15355	0.15	-0.5
3,443,851	+		HER17_RS15355	0.15	+0.2
3,443,851	+		HER17_RS15355	0.15	+0.8
3,443,851	+		HER17_RS15355	0.15	-1.4
3,443,852	-		HER17_RS15355	0.15	+0.5
3,443,852	-		HER17_RS15355	0.15	+1.1
3,443,852	-		HER17_RS15355	0.15	-0.3
3,443,852	-		HER17_RS15355	0.15	+0.9
3,443,852	-		HER17_RS15355	0.15	+0.4
3,443,853	+		HER17_RS15355	0.15	-0.5
3,443,853	+		HER17_RS15355	0.15	-2.2
3,443,853	+		HER17_RS15355	0.15	+0.7
3,443,853	+		HER17_RS15355	0.15	-0.1
3,443,854	-		HER17_RS15355	0.15	+0.3
3,443,854	-		HER17_RS15355	0.15	-0.7
3,443,854	-		HER17_RS15355	0.15	+0.3
3,443,854	-		HER17_RS15355	0.15	-0.2
3,443,950	+		HER17_RS15355	0.19	-0.2
3,443,950	+		HER17_RS15355	0.19	+0.4
3,443,950	+		HER17_RS15355	0.19	-0.9
3,443,950	+		HER17_RS15355	0.19	-0.7
3,443,950	+		HER17_RS15355	0.19	-1.4
3,443,951	-		HER17_RS15355	0.19	+0.1
3,443,954	-		HER17_RS15355	0.19	-1.2
3,443,990	+		HER17_RS15355	0.21	+1.3
3,444,049	+		HER17_RS15355	0.23	-0.7
3,444,050	-		HER17_RS15355	0.23	+1.6
3,444,115	+		HER17_RS15355	0.26	-0.1
3,444,115	+		HER17_RS15355	0.26	+1.2
3,444,116	-		HER17_RS15355	0.26	-0.7
3,444,171	+		HER17_RS15355	0.29	-0.3
3,444,172	-		HER17_RS15355	0.29	+1.3
3,444,198	+		HER17_RS15355	0.30	-0.3
3,444,199	-		HER17_RS15355	0.30	-1.1
3,444,199	-		HER17_RS15355	0.30	-0.2
3,444,225	+		HER17_RS15355	0.31	-0.2
3,444,225	+		HER17_RS15355	0.31	-0.1
3,444,225	+		HER17_RS15355	0.31	+0.0
3,444,225	+		HER17_RS15355	0.31	-0.7
3,444,225	+		HER17_RS15355	0.31	-0.1
3,444,225	+		HER17_RS15355	0.31	-2.9
3,444,226	-		HER17_RS15355	0.31	-0.7
3,444,226	-		HER17_RS15355	0.31	+0.4
3,444,331	+		HER17_RS15355	0.35	-0.4
3,444,332	-		HER17_RS15355	0.35	+2.2
3,444,332	-		HER17_RS15355	0.35	+0.4
3,444,332	-		HER17_RS15355	0.35	+3.6
3,444,332	-		HER17_RS15355	0.35	-0.8
3,444,332	-		HER17_RS15355	0.35	+0.7
3,444,333	+		HER17_RS15355	0.35	-0.7
3,444,333	+		HER17_RS15355	0.35	-1.5
3,444,333	+		HER17_RS15355	0.35	-0.2
3,444,333	+		HER17_RS15355	0.35	+0.8
3,444,334	-		HER17_RS15355	0.35	+0.5
3,444,334	-		HER17_RS15355	0.35	-0.4
3,444,334	-		HER17_RS15355	0.35	-1.1
3,444,334	-		HER17_RS15355	0.35	-0.2
3,444,334	-		HER17_RS15355	0.35	-0.1
3,444,371	+		HER17_RS15355	0.37	-0.9
3,444,372	-		HER17_RS15355	0.37	+0.1
3,444,372	-		HER17_RS15355	0.37	+2.6
3,444,387	+		HER17_RS15355	0.38	-0.1
3,444,387	+		HER17_RS15355	0.38	-3.2
3,444,387	+		HER17_RS15355	0.38	+0.1
3,444,388	-		HER17_RS15355	0.38	-0.2
3,444,388	-		HER17_RS15355	0.38	-2.1
3,444,426	+		HER17_RS15355	0.39	-1.9
3,444,426	+		HER17_RS15355	0.39	+1.9
3,444,426	+		HER17_RS15355	0.39	+1.5
3,444,427	-		HER17_RS15355	0.39	-0.1
3,444,427	-		HER17_RS15355	0.39	-1.2
3,444,448	+		HER17_RS15355	0.40	+0.7
3,444,448	+		HER17_RS15355	0.40	-0.3
3,444,448	+		HER17_RS15355	0.40	+0.3
3,444,448	+		HER17_RS15355	0.40	+0.7
3,444,448	+		HER17_RS15355	0.40	+1.2
3,444,449	-		HER17_RS15355	0.40	+2.3
3,444,449	-		HER17_RS15355	0.40	+1.3
3,444,450	+		HER17_RS15355	0.40	-1.1
3,444,450	+		HER17_RS15355	0.40	+1.6
3,444,451	-		HER17_RS15355	0.40	+0.9
3,444,451	-		HER17_RS15355	0.40	+1.5
3,444,451	-		HER17_RS15355	0.40	+1.3
3,444,544	+		HER17_RS15355	0.44	-0.1
3,444,545	-		HER17_RS15355	0.44	-1.4
3,444,545	-		HER17_RS15355	0.44	-1.7
3,444,546	+		HER17_RS15355	0.44	-0.4
3,444,643	+		HER17_RS15355	0.48	-0.8
3,444,644	-		HER17_RS15355	0.49	-0.2
3,444,684	+		HER17_RS15355	0.50	+2.0
3,444,685	-		HER17_RS15355	0.50	-0.1
3,444,685	-		HER17_RS15355	0.50	-0.7
3,444,685	-		HER17_RS15355	0.50	-1.2
3,444,687	+		HER17_RS15355	0.50	-1.1
3,444,687	+		HER17_RS15355	0.50	-1.7
3,444,687	+		HER17_RS15355	0.50	+0.3
3,444,712	+		HER17_RS15355	0.51	-0.4
3,444,712	+		HER17_RS15355	0.51	-1.3
3,444,713	-		HER17_RS15355	0.51	-0.8
3,444,739	-		HER17_RS15355	0.53	-2.2
3,444,755	+		HER17_RS15355	0.53	+0.5
3,444,756	-		HER17_RS15355	0.53	+0.5
3,444,796	+		HER17_RS15355	0.55	-0.5
3,444,797	-		HER17_RS15355	0.55	+0.2
3,444,870	+		HER17_RS15355	0.58	-0.1
3,444,870	+		HER17_RS15355	0.58	+0.8
3,444,870	+		HER17_RS15355	0.58	-0.2
3,444,871	-		HER17_RS15355	0.58	+1.4
3,444,871	-		HER17_RS15355	0.58	+2.6
3,444,871	-		HER17_RS15355	0.58	-1.7
3,444,871	-		HER17_RS15355	0.58	+0.1
3,444,892	-		HER17_RS15355	0.59	-1.9
3,444,943	+		HER17_RS15355	0.61	+1.7
3,444,944	-		HER17_RS15355	0.61	-0.2
3,444,961	+		HER17_RS15355	0.62	+3.7
3,445,017	-		HER17_RS15355	0.64	+2.6
3,445,017	-		HER17_RS15355	0.64	-1.3
3,445,017	-		HER17_RS15355	0.64	+0.3
3,445,017	-		HER17_RS15355	0.64	+0.9
3,445,055	-		HER17_RS15355	0.66	-0.7
3,445,138	+		HER17_RS15355	0.69	+1.5
3,445,219	-		HER17_RS15355	0.73	-0.7
3,445,237	+		HER17_RS15355	0.74	-2.2
3,445,238	-		HER17_RS15355	0.74	-2.4
3,445,259	+		HER17_RS15355	0.75	+0.2
3,445,259	+		HER17_RS15355	0.75	-1.4
3,445,259	+		HER17_RS15355	0.75	-1.7
3,445,260	-		HER17_RS15355	0.75	-1.7
3,445,264	+		HER17_RS15355	0.75	-0.2
3,445,306	+		HER17_RS15355	0.77	+1.8
3,445,307	-		HER17_RS15355	0.77	-1.2
3,445,330	+		HER17_RS15355	0.78	-1.9
3,445,331	-		HER17_RS15355	0.78	-1.4
3,445,331	-		HER17_RS15355	0.78	+1.7
3,445,360	+		HER17_RS15355	0.79	-0.4
3,445,360	+		HER17_RS15355	0.79	+0.0
3,445,360	+		HER17_RS15355	0.79	+1.9
3,445,360	+		HER17_RS15355	0.79	+2.0
3,445,361	-		HER17_RS15355	0.79	-1.2
3,445,361	-		HER17_RS15355	0.79	-0.7
3,445,361	-		HER17_RS15355	0.79	-0.7
3,445,397	+		HER17_RS15355	0.80	+2.0
3,445,427	+		HER17_RS15355	0.82	-0.4
3,445,427	+		HER17_RS15355	0.82	+1.6
3,445,432	+		HER17_RS15355	0.82	+0.9
3,445,433	-		HER17_RS15355	0.82	-0.8
3,445,530	-		HER17_RS15355	0.86	+0.6
3,445,530	-		HER17_RS15355	0.86	+0.5
3,445,533	-		HER17_RS15355	0.86	+1.0
3,445,547	+		HER17_RS15355	0.87	-1.1
3,445,547	+		HER17_RS15355	0.87	+0.6
3,445,547	+		HER17_RS15355	0.87	+0.3
3,445,547	+		HER17_RS15355	0.87	-0.1
3,445,548	-		HER17_RS15355	0.87	-3.0
3,445,550	+		HER17_RS15355	0.87	+0.8
3,445,550	+		HER17_RS15355	0.87	+1.2
3,445,551	-		HER17_RS15355	0.87	-0.1
3,445,579	-		HER17_RS15355	0.88	+0.3
3,445,579	-		HER17_RS15355	0.88	+0.8
3,445,579	-		HER17_RS15355	0.88	+2.0
3,445,582	+		HER17_RS15355	0.88	+0.5
3,445,627	+				+0.6
3,445,697	-				-2.1
3,445,777	+				+0.3
3,445,790	-				+0.9
3,445,790	-				-0.1
3,445,790	-				+0.5
3,445,895	-				-1.7
3,445,895	-				+1.1
3,445,906	+				+1.9
3,445,906	+				+1.5
3,445,907	-				-0.2
3,445,986	-				-0.1
3,445,986	-				-1.2
3,446,012	+				-0.7
3,446,032	+				-0.1
3,446,033	-				-1.1
3,446,086	+				+0.0
3,446,094	+				-0.7
3,446,110	+				-0.5
3,446,110	+				+0.1
3,446,124	+				+0.6
3,446,128	+				+0.7
3,446,129	-				+2.0
3,446,129	-				-0.7
3,446,129	-				+4.6
3,446,135	-				+2.5
3,446,248	+				+0.5
3,446,253	+				+1.4
3,446,258	-				+1.1
3,446,258	-				-1.5
3,446,258	-				-0.2
3,446,271	+				+1.6
3,446,271	+				+2.1
3,446,272	-				-0.1
3,446,272	-				-1.3
3,446,272	-				+0.5
3,446,272	-				-1.5
3,446,272	-				+0.6
3,446,272	-				+1.5
3,446,300	-				-0.3
3,446,437	+		HER17_RS15360	0.32	+2.3
3,446,437	+		HER17_RS15360	0.32	-0.1
3,446,437	+		HER17_RS15360	0.32	-0.1
3,446,438	-		HER17_RS15360	0.33	+1.3
3,446,438	-		HER17_RS15360	0.33	-2.0
3,446,462	+		HER17_RS15360	0.37	-0.1
3,446,462	+		HER17_RS15360	0.37	-1.2
3,446,463	-		HER17_RS15360	0.37	+0.7
3,446,479	+		HER17_RS15360	0.40	+0.2
3,446,479	+		HER17_RS15360	0.40	+0.6
3,446,484	+		HER17_RS15360	0.41	+0.4
3,446,485	-		HER17_RS15360	0.42	-1.1
3,446,485	-		HER17_RS15360	0.42	-0.8
3,446,520	+		HER17_RS15360	0.48	+1.9
3,446,540	+		HER17_RS15360	0.52	+0.7
3,446,540	+		HER17_RS15360	0.52	-1.3
3,446,679	+		HER17_RS15360	0.79	+1.9
3,446,680	-		HER17_RS15360	0.79	-0.7
3,446,680	-		HER17_RS15360	0.79	+0.8
3,446,730	+		HER17_RS15360	0.89	-0.3
3,446,730	+		HER17_RS15360	0.89	+1.8
3,446,730	+		HER17_RS15360	0.89	-0.8
3,446,731	-		HER17_RS15360	0.89	-0.9
3,446,731	-		HER17_RS15360	0.89	-0.8
3,446,731	-		HER17_RS15360	0.89	-1.1
3,446,731	-		HER17_RS15360	0.89	-0.6
3,446,731	-		HER17_RS15360	0.89	+0.2
3,446,731	-		HER17_RS15360	0.89	-1.9
3,446,757	+				-0.5
3,446,785	+				-1.0
3,446,785	+				+0.0
3,446,785	+				+0.6
3,446,785	+				+2.9
3,446,785	+				-0.1
3,446,785	+				+0.5
3,446,786	-				+0.1
3,446,786	-				+0.4
3,446,786	-				-0.6
3,446,786	-				+2.5
3,446,786	-				-1.1
3,446,786	-				+0.4
3,446,787	+				-0.3
3,446,787	+				+0.3
3,446,787	+				-0.5
3,446,788	-				+0.9
3,446,788	-				-0.5