Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS13250

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
2,936,485	+				-0.7
2,936,485	+				-0.3
2,936,500	+				-0.6
2,936,501	-				+0.3
2,936,505	+				-0.0
2,936,509	-				+1.7
2,936,516	-				+0.5
2,936,526	+				-1.7
2,936,527	-				-1.0
2,936,527	-				-0.7
2,936,530	+				+1.7
2,936,531	-				-0.3
2,936,552	+				-1.9
2,936,598	+				+2.3
2,936,598	+				+1.9
2,936,600	+				+2.1
2,936,601	-				-0.9
2,936,601	-				-0.3
2,936,718	+		HER17_RS21990	0.80	+0.4
2,936,718	+		HER17_RS21990	0.80	+1.2
2,936,719	-		HER17_RS21990	0.81	+0.1
2,936,719	-		HER17_RS21990	0.81	+1.4
2,936,721	+		HER17_RS21990	0.82	-0.3
2,936,721	+		HER17_RS21990	0.82	-0.1
2,936,760	-				+2.2
2,936,760	-				-1.3
2,936,763	-				-0.5
2,936,763	-				-1.9
2,936,763	-				-0.7
2,936,810	-				+0.7
2,936,827	+				-0.9
2,936,842	+				-1.3
2,936,969	-		HER17_RS13245	0.24	+0.8
2,936,975	-		HER17_RS13245	0.25	+0.1
2,937,030	+		HER17_RS13245	0.35	+1.3
2,937,030	+		HER17_RS13245	0.35	-0.3
2,937,030	+		HER17_RS13245	0.35	+3.4
2,937,030	+		HER17_RS13245	0.35	-2.6
2,937,030	+		HER17_RS13245	0.35	-1.6
2,937,031	-		HER17_RS13245	0.35	-0.3
2,937,089	+		HER17_RS13245	0.46	-1.6
2,937,090	-		HER17_RS13245	0.46	+0.1
2,937,115	-		HER17_RS13245	0.51	+1.7
2,937,131	-		HER17_RS13245	0.54	+0.0
2,937,131	-		HER17_RS13245	0.54	+1.7
2,937,182	+		HER17_RS13245	0.63	+0.3
2,937,191	+		HER17_RS13245	0.65	+0.1
2,937,192	-		HER17_RS13245	0.65	+0.2
2,937,194	+		HER17_RS13245	0.65	+2.4
2,937,194	+		HER17_RS13245	0.65	+0.7
2,937,194	+		HER17_RS13245	0.65	-2.1
2,937,194	+		HER17_RS13245	0.65	-1.6
2,937,195	-		HER17_RS13245	0.66	-1.8
2,937,195	-		HER17_RS13245	0.66	-0.2
2,937,195	-		HER17_RS13245	0.66	+0.9
2,937,202	-		HER17_RS13245	0.67	+0.5
2,937,202	-		HER17_RS13245	0.67	-1.1
2,937,269	+		HER17_RS13245	0.79	+0.0
2,937,270	-		HER17_RS13245	0.79	+1.3
2,937,270	-		HER17_RS13245	0.79	-0.9
2,937,270	-		HER17_RS13245	0.79	-1.4
2,937,271	+		HER17_RS13245	0.80	-1.5
2,937,271	+		HER17_RS13245	0.80	-1.9
2,937,271	+		HER17_RS13245	0.80	-1.4
2,937,291	+		HER17_RS13245	0.83	-0.3
2,937,291	+		HER17_RS13245	0.83	-0.3
2,937,291	+		HER17_RS13245	0.83	-0.5
2,937,291	+		HER17_RS13245	0.83	-1.4
2,937,291	+		HER17_RS13245	0.83	-0.9
2,937,291	+		HER17_RS13245	0.83	-1.3
2,937,292	-		HER17_RS13245	0.84	-0.1
2,937,292	-		HER17_RS13245	0.84	+0.3
2,937,292	-		HER17_RS13245	0.84	-0.9
2,937,292	-		HER17_RS13245	0.84	-0.3
2,937,292	-		HER17_RS13245	0.84	+1.1
2,937,292	-		HER17_RS13245	0.84	+0.7
2,937,303	+		HER17_RS13245	0.86	+0.7
2,937,303	+		HER17_RS13245	0.86	+0.2
2,937,304	-		HER17_RS13245	0.86	+0.0
2,937,380	+				-0.3
2,937,380	+				-0.3
2,937,381	-				+0.7
2,937,397	-				-0.0
2,937,397	-				-0.9
2,937,422	+				+0.3
2,937,422	+				-1.2
2,937,422	+				-0.3
2,937,423	-				-3.3
2,937,425	+				+1.3
2,937,425	+				+0.9
2,937,484	+				-0.6
2,937,484	+				-0.7
2,937,581	+				+0.5
2,937,582	-				-1.5
2,937,640	+				-1.9
2,937,641	-				-1.1
2,937,641	-				-0.3
2,937,641	-				-0.2
2,937,687	+				+0.5
2,937,688	-				-0.6
2,937,688	-				-1.3
2,937,688	-				-0.5
2,937,710	+				-0.3
2,937,710	+				-0.1
2,937,710	+				+1.7
2,937,710	+				-0.3
2,937,711	-				+0.3
2,937,711	-				-1.2
2,937,711	-				-0.0
2,937,711	-				-0.3
2,937,711	-				-0.3
2,937,719	-		HER17_RS13250	0.10	-1.8
2,937,719	-		HER17_RS13250	0.10	+1.3
2,937,836	+		HER17_RS13250	0.15	-0.9
2,937,836	+		HER17_RS13250	0.15	-1.6
2,937,837	-		HER17_RS13250	0.15	-0.3
2,937,837	-		HER17_RS13250	0.15	+0.6
2,937,884	+		HER17_RS13250	0.17	-1.1
2,937,885	-		HER17_RS13250	0.18	-2.2
2,937,897	+		HER17_RS13250	0.18	+0.4
2,937,897	+		HER17_RS13250	0.18	-0.3
2,937,898	-		HER17_RS13250	0.18	+0.7
2,937,898	-		HER17_RS13250	0.18	-1.3
2,937,898	-		HER17_RS13250	0.18	-0.3
2,937,898	-		HER17_RS13250	0.18	-0.3
2,937,899	+		HER17_RS13250	0.18	-2.8
2,937,899	+		HER17_RS13250	0.18	-1.0
2,937,899	+		HER17_RS13250	0.18	-1.0
2,937,899	+		HER17_RS13250	0.18	-1.0
2,937,899	+		HER17_RS13250	0.18	+2.3
2,937,899	+		HER17_RS13250	0.18	-0.5
2,937,899	+		HER17_RS13250	0.18	+0.1
2,937,899	+		HER17_RS13250	0.18	+0.5
2,937,900	-		HER17_RS13250	0.18	+0.1
2,937,900	-		HER17_RS13250	0.18	+0.1
2,937,900	-		HER17_RS13250	0.18	+3.2
2,937,900	-		HER17_RS13250	0.18	-0.3
2,937,950	+		HER17_RS13250	0.20	+1.3
2,937,954	-		HER17_RS13250	0.21	-0.0
2,938,011	+		HER17_RS13250	0.23	+1.0
2,938,011	+		HER17_RS13250	0.23	+0.7
2,938,012	-		HER17_RS13250	0.23	-2.5
2,938,012	-		HER17_RS13250	0.23	-0.9
2,938,012	-		HER17_RS13250	0.23	+0.3
2,938,013	+		HER17_RS13250	0.23	+0.5
2,938,013	+		HER17_RS13250	0.23	-0.9
2,938,013	+		HER17_RS13250	0.23	+0.3
2,938,014	-		HER17_RS13250	0.23	-0.3
2,938,014	-		HER17_RS13250	0.23	-0.3
2,938,014	-		HER17_RS13250	0.23	+0.7
2,938,014	-		HER17_RS13250	0.23	+0.4
2,938,014	-		HER17_RS13250	0.23	+0.6
2,938,326	+		HER17_RS13250	0.37	+0.3
2,938,349	+		HER17_RS13250	0.38	-1.1
2,938,350	-		HER17_RS13250	0.38	-0.5
2,938,350	-		HER17_RS13250	0.38	+0.1
2,938,407	-		HER17_RS13250	0.40	+2.0
2,938,451	+		HER17_RS13250	0.42	-0.9
2,938,452	-		HER17_RS13250	0.42	-1.3
2,938,603	-		HER17_RS13250	0.49	+0.6
2,938,603	-		HER17_RS13250	0.49	-0.4
2,938,653	+		HER17_RS13250	0.51	-0.0
2,938,653	+		HER17_RS13250	0.51	-0.7
2,938,653	+		HER17_RS13250	0.51	-0.5
2,938,654	-		HER17_RS13250	0.51	+0.1
2,938,654	-		HER17_RS13250	0.51	-0.0
2,938,658	-		HER17_RS13250	0.51	+1.9
2,938,713	+		HER17_RS13250	0.53	+0.3
2,938,718	+		HER17_RS13250	0.54	-0.4
2,938,718	+		HER17_RS13250	0.54	-0.7
2,938,719	-		HER17_RS13250	0.54	-1.1
2,938,799	+		HER17_RS13250	0.57	+0.7
2,938,800	-		HER17_RS13250	0.57	-0.3
2,938,812	-		HER17_RS13250	0.58	+1.5
2,938,845	+		HER17_RS13250	0.59	-1.5
2,938,905	+		HER17_RS13250	0.62	+0.0
2,938,980	+		HER17_RS13250	0.65	-1.6
2,938,981	-		HER17_RS13250	0.65	-0.3
2,938,981	-		HER17_RS13250	0.65	+0.1
2,939,060	+		HER17_RS13250	0.68	-0.3
2,939,070	+		HER17_RS13250	0.69	-0.3
2,939,070	+		HER17_RS13250	0.69	+0.4
2,939,070	+		HER17_RS13250	0.69	+0.7
2,939,070	+		HER17_RS13250	0.69	+1.3
2,939,070	+		HER17_RS13250	0.69	+0.9
2,939,071	-		HER17_RS13250	0.69	+0.6
2,939,071	-		HER17_RS13250	0.69	+2.7
2,939,071	-		HER17_RS13250	0.69	-0.3
2,939,071	-		HER17_RS13250	0.69	-0.5
2,939,071	-		HER17_RS13250	0.69	-0.6
2,939,072	+		HER17_RS13250	0.69	+1.9
2,939,072	+		HER17_RS13250	0.69	+0.5
2,939,073	-		HER17_RS13250	0.69	+0.0
2,939,073	-		HER17_RS13250	0.69	-0.1
2,939,073	-		HER17_RS13250	0.69	-2.5
2,939,113	-		HER17_RS13250	0.71	-0.8
2,939,113	-		HER17_RS13250	0.71	+0.3
2,939,113	-		HER17_RS13250	0.71	-0.0
2,939,113	-		HER17_RS13250	0.71	-0.9
2,939,114	+		HER17_RS13250	0.71	+1.4
2,939,114	+		HER17_RS13250	0.71	+1.4
2,939,115	-		HER17_RS13250	0.71	+0.3
2,939,141	+		HER17_RS13250	0.72	+0.2
2,939,150	+		HER17_RS13250	0.72	+2.4
2,939,357	-		HER17_RS13250	0.81	-1.0
2,939,416	-		HER17_RS13250	0.84	-1.9
2,939,424	+		HER17_RS13250	0.84	+2.9
2,939,440	+		HER17_RS13250	0.85	-0.6
2,939,440	+		HER17_RS13250	0.85	-0.9
2,939,441	-		HER17_RS13250	0.85	+0.5
2,939,698	+				+0.1
2,939,761	+				-0.3
2,939,761	+				+1.8
2,939,761	+				-0.9
2,939,763	+				-0.6
2,939,763	+				-1.6
2,939,763	+				-0.3
2,939,763	+				+2.2
2,939,763	+				-0.7
2,939,776	-				-1.8
2,939,793	-				-1.3
2,939,794	+				+0.7
2,939,795	-				+0.3
2,939,973	+				-0.9
2,939,976	+				+0.7
2,939,976	+				-0.6
2,939,976	+				+1.1
2,939,977	-				-0.6
2,939,977	-				+0.2
2,939,977	-				+0.1
2,939,977	-				-0.4
2,939,978	+				+1.4
2,939,979	-				-0.3
2,939,979	-				-2.0
2,939,979	-				-1.6
2,940,003	-				-1.3
2,940,020	+				+0.8
2,940,020	+				-0.0
2,940,020	+				-1.2
2,940,039	+				+2.7
2,940,039	+				-1.3
2,940,039	+				-0.3
2,940,040	-				-0.2
2,940,040	-				+1.2
2,940,040	-				+2.5
2,940,040	-				+0.5
2,940,040	-				-1.0
2,940,080	+				-3.3
2,940,103	+				-0.3
2,940,103	+				-0.7
2,940,103	+				-0.3
2,940,103	+				-0.3
2,940,104	-				-0.2
2,940,104	-				+4.3
2,940,150	+				-0.3
2,940,184	+				+0.5
2,940,184	+				-2.1
2,940,185	-				-1.9
2,940,185	-				-0.4
2,940,185	-				-0.1
2,940,185	-				-0.7
2,940,185	-				-0.1
2,940,185	-				-0.3
2,940,193	+				+1.4
2,940,193	+				+0.9
2,940,193	+				-0.9
2,940,193	+				-0.7
2,940,193	+				-2.6
2,940,193	+				-1.3
2,940,193	+				-1.1
2,940,193	+				-0.3
2,940,193	+				-1.9
2,940,194	-				+1.0
2,940,194	-				-0.0
2,940,194	-				-1.7
2,940,211	+				+2.0
2,940,212	-				+1.3
2,940,315	+		HER17_RS13255	0.20	-0.1
2,940,398	-		HER17_RS13255	0.32	-0.3
2,940,548	+		HER17_RS13255	0.53	-1.9
2,940,579	+		HER17_RS13255	0.58	+0.1
2,940,579	+		HER17_RS13255	0.58	-0.3
2,940,580	-		HER17_RS13255	0.58	+0.7
2,940,695	-		HER17_RS13255	0.75	-1.8
2,940,727	+		HER17_RS13255	0.79	-0.3
2,940,770	+		HER17_RS13255	0.86	+0.6
2,940,771	-		HER17_RS13255	0.86	+0.5
2,940,771	-		HER17_RS13255	0.86	-0.9