Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS10245

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
2,284,946	+		HER17_RS10240	0.33	-1.5
2,285,048	+		HER17_RS10240	0.41	-0.2
2,285,048	+		HER17_RS10240	0.41	-0.5
2,285,048	+		HER17_RS10240	0.41	-1.8
2,285,049	-		HER17_RS10240	0.41	+0.2
2,285,049	-		HER17_RS10240	0.41	-0.8
2,285,120	-		HER17_RS10240	0.47	-2.3
2,285,132	+		HER17_RS10240	0.48	-2.3
2,285,132	+		HER17_RS10240	0.48	+1.2
2,285,132	+		HER17_RS10240	0.48	+0.5
2,285,132	+		HER17_RS10240	0.48	+0.4
2,285,133	-		HER17_RS10240	0.48	-0.7
2,285,250	-		HER17_RS10240	0.57	-1.8
2,285,250	-		HER17_RS10240	0.57	-0.1
2,285,250	-		HER17_RS10240	0.57	+0.5
2,285,250	-		HER17_RS10240	0.57	-1.7
2,285,251	+		HER17_RS10240	0.57	+1.1
2,285,252	-		HER17_RS10240	0.57	-2.1
2,285,375	+		HER17_RS10240	0.67	+0.9
2,285,423	+		HER17_RS10240	0.71	-1.8
2,285,423	+		HER17_RS10240	0.71	+1.1
2,285,476	+		HER17_RS10240	0.75	-1.4
2,285,498	+		HER17_RS10240	0.77	-0.1
2,285,499	-		HER17_RS10240	0.77	-0.5
2,285,512	+		HER17_RS10240	0.78	-1.1
2,285,512	+		HER17_RS10240	0.78	-0.7
2,285,512	+		HER17_RS10240	0.78	-0.4
2,285,512	+		HER17_RS10240	0.78	-0.5
2,285,512	+		HER17_RS10240	0.78	+1.4
2,285,512	+		HER17_RS10240	0.78	-2.6
2,285,512	+		HER17_RS10240	0.78	-0.9
2,285,513	-		HER17_RS10240	0.78	-1.8
2,285,513	-		HER17_RS10240	0.78	+0.1
2,285,513	-		HER17_RS10240	0.78	+0.9
2,285,513	-		HER17_RS10240	0.78	-0.5
2,285,513	-		HER17_RS10240	0.78	-0.5
2,285,557	+		HER17_RS10240	0.81	-1.7
2,285,739	-				+0.0
2,285,739	-				-0.8
2,285,739	-				-0.2
2,285,755	+				+1.1
2,285,755	+				+2.0
2,285,776	-				+1.7
2,285,821	-				+1.7
2,285,845	+				-0.2
2,285,845	+				-0.2
2,285,845	+				+0.1
2,285,845	+				-1.1
2,285,845	+				+2.0
2,285,845	+				+1.1
2,285,845	+				+1.8
2,285,845	+				+0.2
2,285,846	-				+2.8
2,285,846	-				+1.0
2,285,846	-				-1.3
2,285,846	-				+0.5
2,285,846	-				-0.4
2,285,847	+				+0.8
2,285,848	-				-0.9
2,285,848	-				+0.1
2,285,879	+				+1.8
2,285,880	-				-1.5
2,285,880	-				+2.9
2,285,883	+				-0.9
2,285,883	+				-1.8
2,285,883	+				+2.1
2,285,883	+				+0.4
2,285,884	-				+2.4
2,286,030	-		HER17_RS10245	0.11	+0.0
2,286,251	+		HER17_RS10245	0.25	+0.8
2,286,290	+		HER17_RS10245	0.28	+0.2
2,286,290	+		HER17_RS10245	0.28	+0.5
2,286,290	+		HER17_RS10245	0.28	+2.5
2,286,291	-		HER17_RS10245	0.28	+0.6
2,286,291	-		HER17_RS10245	0.28	+0.5
2,286,305	+		HER17_RS10245	0.29	-1.0
2,286,306	-		HER17_RS10245	0.29	+0.2
2,286,323	+		HER17_RS10245	0.30	-0.7
2,286,324	-		HER17_RS10245	0.30	-0.0
2,286,345	+		HER17_RS10245	0.31	+0.2
2,286,362	+		HER17_RS10245	0.32	+0.5
2,286,362	+		HER17_RS10245	0.32	-1.1
2,286,362	+		HER17_RS10245	0.32	+0.2
2,286,443	+		HER17_RS10245	0.37	+1.1
2,286,444	-		HER17_RS10245	0.37	-1.0
2,286,444	-		HER17_RS10245	0.37	-1.8
2,286,620	-		HER17_RS10245	0.49	+0.5
2,286,627	-		HER17_RS10245	0.49	+1.3
2,286,692	+		HER17_RS10245	0.53	+2.3
2,286,693	-		HER17_RS10245	0.53	-0.1
2,286,758	+		HER17_RS10245	0.57	-0.5
2,286,769	-		HER17_RS10245	0.58	-0.9
2,286,888	+		HER17_RS10245	0.65	+1.0
2,286,888	+		HER17_RS10245	0.65	-0.0
2,286,888	+		HER17_RS10245	0.65	-1.7
2,286,888	+		HER17_RS10245	0.65	-0.2
2,286,977	-		HER17_RS10245	0.71	-0.8
2,287,129	-		HER17_RS10245	0.81	+1.5
2,287,222	+		HER17_RS10245	0.86	+1.1
2,287,222	+		HER17_RS10245	0.86	-1.4
2,287,222	+		HER17_RS10245	0.86	-1.1
2,287,223	-		HER17_RS10245	0.86	+2.1
2,287,223	-		HER17_RS10245	0.86	+1.8
2,287,223	-		HER17_RS10245	0.86	-0.0
2,287,223	-		HER17_RS10245	0.86	+1.5
2,287,368	-				+0.5
2,287,448	+				+0.5
2,287,449	-				-0.1
2,287,449	-				-1.3
2,287,449	-				-0.5
2,287,460	+				-0.5
2,287,460	+				-1.4
2,287,461	-				+0.1
2,287,461	-				+0.5
2,287,461	-				-0.3
2,287,590	+		HER17_RS10250	0.13	+0.3
2,287,590	+		HER17_RS10250	0.13	-0.1
2,287,590	+		HER17_RS10250	0.13	-0.5
2,287,591	-		HER17_RS10250	0.13	-1.5
2,287,592	+		HER17_RS10250	0.13	+0.5
2,287,592	+		HER17_RS10250	0.13	-2.3
2,287,592	+		HER17_RS10250	0.13	+2.1
2,287,593	-		HER17_RS10250	0.13	+2.3
2,287,593	-		HER17_RS10250	0.13	+0.7
2,287,593	-		HER17_RS10250	0.13	-1.0
2,287,593	-		HER17_RS10250	0.13	-1.1
2,287,623	+		HER17_RS10250	0.16	-2.0
2,287,624	-		HER17_RS10250	0.16	+0.2
2,287,662	+		HER17_RS10250	0.20	-1.5
2,287,728	+		HER17_RS10250	0.26	+0.8
2,287,728	+		HER17_RS10250	0.26	-1.4
2,287,729	-		HER17_RS10250	0.26	-0.7
2,287,729	-		HER17_RS10250	0.26	-0.9
2,287,729	-		HER17_RS10250	0.26	-1.5
2,287,769	+		HER17_RS10250	0.30	+1.5
2,287,770	-		HER17_RS10250	0.30	+0.7
2,287,770	-		HER17_RS10250	0.30	-0.2
2,287,917	+		HER17_RS10250	0.43	+0.3
2,287,918	-		HER17_RS10250	0.44	-1.5
2,287,948	-		HER17_RS10250	0.46	-0.5
2,287,948	-		HER17_RS10250	0.46	-0.5
2,287,948	-		HER17_RS10250	0.46	+1.1
2,288,015	+		HER17_RS10250	0.53	-2.1
2,288,015	+		HER17_RS10250	0.53	-0.7
2,288,057	+		HER17_RS10250	0.56	-1.0
2,288,058	-		HER17_RS10250	0.57	+1.4
2,288,065	+		HER17_RS10250	0.57	-1.4
2,288,066	-		HER17_RS10250	0.57	-0.4
2,288,066	-		HER17_RS10250	0.57	+0.7
2,288,262	+		HER17_RS10250	0.75	+2.1
2,288,262	+		HER17_RS10250	0.75	-0.1
2,288,262	+		HER17_RS10250	0.75	-0.8
2,288,262	+		HER17_RS10250	0.75	+1.7
2,288,262	+		HER17_RS10250	0.75	-0.5
2,288,262	+		HER17_RS10250	0.75	+1.3
2,288,262	+		HER17_RS10250	0.75	-1.8
2,288,263	-		HER17_RS10250	0.76	-0.3
2,288,263	-		HER17_RS10250	0.76	-0.5
2,288,263	-		HER17_RS10250	0.76	-0.1
2,288,263	-		HER17_RS10250	0.76	+1.8
2,288,263	-		HER17_RS10250	0.76	+1.0
2,288,263	-		HER17_RS10250	0.76	-0.8
2,288,263	-		HER17_RS10250	0.76	-0.8
2,288,263	-		HER17_RS10250	0.76	-2.3
2,288,263	-		HER17_RS10250	0.76	+1.1
2,288,263	-		HER17_RS10250	0.76	-0.6