Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09660

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
2,129,664	+				-0.1
2,129,664	+				+0.9
2,129,732	+		HER17_RS09655	0.13	+5.1
2,129,785	+		HER17_RS09655	0.21	+1.0
2,129,795	+		HER17_RS09655	0.23	+0.2
2,129,852	-		HER17_RS09655	0.32	-0.8
2,129,852	-		HER17_RS09655	0.32	-0.3
2,129,939	+		HER17_RS09655	0.47	-0.5
2,129,939	+		HER17_RS09655	0.47	+0.5
2,129,939	+		HER17_RS09655	0.47	+1.0
2,129,940	-		HER17_RS09655	0.47	+0.5
2,129,940	-		HER17_RS09655	0.47	-2.3
2,129,940	-		HER17_RS09655	0.47	+0.5
2,129,970	+		HER17_RS09655	0.52	-2.8
2,129,972	+		HER17_RS09655	0.52	-1.8
2,129,972	+		HER17_RS09655	0.52	-0.8
2,129,973	-		HER17_RS09655	0.52	-2.0
2,130,097	+		HER17_RS09655	0.73	-1.5
2,130,098	-		HER17_RS09655	0.73	+0.6
2,130,098	-		HER17_RS09655	0.73	-1.3
2,130,150	+		HER17_RS09655	0.82	-1.8
2,130,150	+		HER17_RS09655	0.82	+1.4
2,130,151	-		HER17_RS09655	0.82	-1.2
2,130,151	-		HER17_RS09655	0.82	+0.9
2,130,151	-		HER17_RS09655	0.82	-1.6
2,130,219	-				-0.0
2,130,299	-				+1.1
2,130,324	-				+0.3
2,130,355	+				-1.7
2,130,356	-				+0.5
2,130,368	+				-1.0
2,130,378	+				-0.0
2,130,378	+				-1.5
2,130,402	-				-1.1
2,130,421	+				-1.5
2,130,432	-				+0.5
2,130,444	+				-1.8
2,130,445	-				-2.5
2,130,445	-				-1.0
2,130,445	-				+0.9
2,130,448	-				-2.0
2,130,475	-				-1.7
2,130,475	-				+0.1
2,130,554	-				+0.2
2,130,589	+				+0.7
2,130,589	+				+2.9
2,130,590	-				+0.2
2,130,593	+				+1.2
2,130,594	-				+0.5
2,130,594	-				-0.5
2,130,594	-				+0.8
2,130,601	+				+2.3
2,130,601	+				-2.3
2,130,602	-				+1.2
2,130,610	+				-2.0
2,130,611	-				+1.1
2,130,811	+				-0.5
2,130,812	-				+1.5
2,130,842	+				+0.5
2,131,022	+		HER17_RS09660	0.11	+0.5
2,131,023	-		HER17_RS09660	0.11	+1.0
2,131,023	-		HER17_RS09660	0.11	-0.0
2,131,055	+		HER17_RS09660	0.12	+1.1
2,131,055	+		HER17_RS09660	0.12	-0.5
2,131,055	+		HER17_RS09660	0.12	+0.1
2,131,056	-		HER17_RS09660	0.12	+0.0
2,131,126	-		HER17_RS09660	0.13	-1.5
2,131,188	+		HER17_RS09660	0.15	-1.3
2,131,223	-		HER17_RS09660	0.16	+1.5
2,131,233	-		HER17_RS09660	0.16	+0.9
2,131,233	-		HER17_RS09660	0.16	-0.6
2,131,236	-		HER17_RS09660	0.16	+0.5
2,131,236	-		HER17_RS09660	0.16	-2.0
2,131,278	-		HER17_RS09660	0.17	-2.4
2,131,278	-		HER17_RS09660	0.17	+2.3
2,131,378	+		HER17_RS09660	0.20	-1.8
2,131,639	-		HER17_RS09660	0.27	-0.5
2,131,742	+		HER17_RS09660	0.29	-0.3
2,131,778	+		HER17_RS09660	0.30	+1.1
2,131,824	-		HER17_RS09660	0.32	+1.9
2,131,938	-		HER17_RS09660	0.35	+0.3
2,131,970	-		HER17_RS09660	0.35	-0.2
2,131,970	-		HER17_RS09660	0.35	+0.8
2,131,970	-		HER17_RS09660	0.35	+1.1
2,131,980	-		HER17_RS09660	0.36	+1.1
2,132,081	+		HER17_RS09660	0.38	+2.7
2,132,081	+		HER17_RS09660	0.38	-1.0
2,132,242	-		HER17_RS09660	0.42	-3.0
2,132,242	-		HER17_RS09660	0.42	-0.2
2,132,310	-		HER17_RS09660	0.44	+0.3
2,132,313	+		HER17_RS09660	0.44	-0.5
2,132,314	-		HER17_RS09660	0.44	-0.0
2,132,339	+		HER17_RS09660	0.45	+0.5
2,132,339	+		HER17_RS09660	0.45	+1.3
2,132,344	-		HER17_RS09660	0.45	-1.0
2,132,344	-		HER17_RS09660	0.45	-0.5
2,132,406	+		HER17_RS09660	0.47	-1.0
2,132,414	+		HER17_RS09660	0.47	-0.7
2,132,415	-		HER17_RS09660	0.47	+0.5
2,132,465	+		HER17_RS09660	0.48	-0.2
2,132,546	+		HER17_RS09660	0.50	-1.0
2,132,546	+		HER17_RS09660	0.50	-0.5
2,132,635	+		HER17_RS09660	0.53	+0.3
2,132,760	+		HER17_RS09660	0.56	-0.6
2,132,761	-		HER17_RS09660	0.56	-0.9
2,132,761	-		HER17_RS09660	0.56	-0.3
2,132,895	-		HER17_RS09660	0.59	-0.2
2,132,946	+		HER17_RS09660	0.61	-0.5
2,132,946	+		HER17_RS09660	0.61	-0.0
2,133,059	+		HER17_RS09660	0.64	-2.9
2,133,127	+		HER17_RS09660	0.65	-0.0
2,133,128	-		HER17_RS09660	0.65	+1.1
2,133,178	+		HER17_RS09660	0.67	-0.3
2,133,179	-		HER17_RS09660	0.67	-0.5
2,133,179	-		HER17_RS09660	0.67	-0.6
2,133,182	+		HER17_RS09660	0.67	+2.2
2,133,182	+		HER17_RS09660	0.67	+0.5
2,133,183	-		HER17_RS09660	0.67	+2.0
2,133,183	-		HER17_RS09660	0.67	+0.1
2,133,183	-		HER17_RS09660	0.67	-1.5
2,133,183	-		HER17_RS09660	0.67	+2.4
2,133,194	+		HER17_RS09660	0.67	-0.6
2,133,195	-		HER17_RS09660	0.67	-0.5
2,133,272	+		HER17_RS09660	0.69	-0.2
2,133,273	-		HER17_RS09660	0.69	-0.6
2,133,273	-		HER17_RS09660	0.69	+4.5
2,133,292	+		HER17_RS09660	0.70	-0.5
2,133,299	+		HER17_RS09660	0.70	-0.5
2,133,321	+		HER17_RS09660	0.70	-1.8
2,133,344	+		HER17_RS09660	0.71	+0.4
2,133,345	-		HER17_RS09660	0.71	+3.1
2,133,348	-		HER17_RS09660	0.71	-2.3
2,133,348	-		HER17_RS09660	0.71	+0.2
2,133,348	-		HER17_RS09660	0.71	+0.7
2,133,356	-		HER17_RS09660	0.71	-1.2
2,133,657	+		HER17_RS09660	0.79	-0.3
2,133,801	+		HER17_RS09660	0.83	+1.5
2,133,801	+		HER17_RS09660	0.83	-1.3
2,133,843	+		HER17_RS09660	0.84	-1.2
2,133,888	-		HER17_RS09660	0.85	-1.0
2,134,072	+				-0.6
2,134,072	+				+0.5
2,134,072	+				-1.5
2,134,073	-				-0.7
2,134,073	-				+0.2
2,134,076	+				-2.0
2,134,298	+				+0.3
2,134,299	-				-0.9
2,134,375	-				-0.5
2,134,444	+				+1.1
2,134,444	+				-0.0
2,134,445	-				-0.5
2,134,506	-				+1.1
2,134,506	-				+1.4
2,134,533	-				-0.8
2,134,583	+		HER17_RS09665	0.13	-2.6
2,134,594	-		HER17_RS09665	0.15	-1.5
2,134,602	+		HER17_RS09665	0.16	-0.1
2,134,602	+		HER17_RS09665	0.16	+0.2
2,134,602	+		HER17_RS09665	0.16	+1.1
2,134,603	-		HER17_RS09665	0.16	-1.3
2,134,603	-		HER17_RS09665	0.16	-0.0
2,134,605	+		HER17_RS09665	0.16	+0.8
2,134,606	-		HER17_RS09665	0.16	+0.5
2,134,839	-		HER17_RS09665	0.44	-0.6
2,134,839	-		HER17_RS09665	0.44	-0.3
2,134,839	-		HER17_RS09665	0.44	+1.1
2,134,839	-		HER17_RS09665	0.44	-1.9
2,134,841	+		HER17_RS09665	0.44	-2.0
2,134,841	+		HER17_RS09665	0.44	+1.8
2,134,841	+		HER17_RS09665	0.44	+2.7
2,134,897	+		HER17_RS09665	0.51	+1.5
2,135,106	+		HER17_RS09665	0.76	+0.5
2,135,106	+		HER17_RS09665	0.76	+0.1
2,135,106	+		HER17_RS09665	0.76	-0.3
2,135,107	-		HER17_RS09665	0.76	-1.5
2,135,107	-		HER17_RS09665	0.76	-0.5
2,135,109	-		HER17_RS09665	0.76	-1.0
2,135,109	-		HER17_RS09665	0.76	-0.8
2,135,158	+		HER17_RS09665	0.82	+0.1
2,135,234	-				+2.9
2,135,234	-				-0.3
2,135,234	-				+2.9
2,135,298	+				+0.5
2,135,310	+				+2.3
2,135,337	+				-1.5
2,135,358	+				-1.0
2,135,358	+				-0.3
2,135,431	-				-0.3