Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09640

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
2,123,895	+		HER17_RS09635	0.63	-0.7
2,123,943	+		HER17_RS09635	0.66	+1.0
2,123,944	-		HER17_RS09635	0.66	+2.3
2,123,962	+		HER17_RS09635	0.67	-0.7
2,124,000	+		HER17_RS09635	0.69	+0.5
2,124,001	-		HER17_RS09635	0.69	-0.2
2,124,143	+		HER17_RS09635	0.79	+0.8
2,124,143	+		HER17_RS09635	0.79	+0.0
2,124,143	+		HER17_RS09635	0.79	-0.1
2,124,144	-		HER17_RS09635	0.79	-2.4
2,124,144	-		HER17_RS09635	0.79	-0.4
2,124,144	-		HER17_RS09635	0.79	-0.1
2,124,145	+		HER17_RS09635	0.79	-0.7
2,124,145	+		HER17_RS09635	0.79	+0.6
2,124,146	-		HER17_RS09635	0.79	-0.9
2,124,203	-		HER17_RS09635	0.82	-1.2
2,124,366	-				-0.1
2,124,382	+				+0.1
2,124,490	+				-2.0
2,124,490	+				-0.4
2,124,491	-				-1.6
2,124,496	-				-1.0
2,124,512	-				-0.1
2,124,529	+				-0.8
2,124,530	-				-1.0
2,124,548	+				-0.1
2,124,549	-				+0.1
2,124,559	-				-1.9
2,124,559	-				-3.0
2,124,583	-				-1.8
2,124,583	-				+1.7
2,124,593	+				-1.8
2,124,593	+				-0.9
2,124,594	-				-0.4
2,124,599	+				-0.0
2,124,599	+				+1.1
2,124,600	-				-0.7
2,124,600	-				-0.4
2,124,600	-				+0.4
2,124,600	-				-1.8
2,124,601	+				+1.0
2,124,603	+				-0.7
2,124,609	+				-1.3
2,124,612	+				-1.8
2,124,613	-				-0.9
2,124,730	+				+2.4
2,124,730	+				-1.4
2,124,730	+				+3.2
2,124,843	+				+1.7
2,124,843	+				+0.6
2,124,843	+				+1.0
2,124,843	+				-0.9
2,124,844	-				-1.0
2,124,848	-				+0.8
2,124,880	-				+0.4
2,124,884	+				-1.8
2,124,986	+				+1.3
2,124,987	-				+4.2
2,125,074	-		HER17_RS09640	0.15	+0.6
2,125,088	+		HER17_RS09640	0.16	-0.2
2,125,125	-		HER17_RS09640	0.18	+0.1
2,125,125	-		HER17_RS09640	0.18	-1.8
2,125,125	-		HER17_RS09640	0.18	-0.3
2,125,125	-		HER17_RS09640	0.18	+0.0
2,125,127	+		HER17_RS09640	0.18	-1.0
2,125,128	-		HER17_RS09640	0.18	-1.3
2,125,128	-		HER17_RS09640	0.18	+1.1
2,125,146	-		HER17_RS09640	0.19	-0.4
2,125,419	-		HER17_RS09640	0.37	-1.0
2,125,420	+		HER17_RS09640	0.37	-1.8
2,125,451	+		HER17_RS09640	0.39	+0.7
2,125,469	+		HER17_RS09640	0.40	+0.4
2,125,469	+		HER17_RS09640	0.40	+0.8
2,125,470	-		HER17_RS09640	0.40	+0.6
2,125,538	+		HER17_RS09640	0.45	-1.0
2,125,538	+		HER17_RS09640	0.45	+2.1
2,125,539	-		HER17_RS09640	0.45	-0.2
2,125,539	-		HER17_RS09640	0.45	-2.3
2,125,650	+		HER17_RS09640	0.52	-2.4
2,125,651	-		HER17_RS09640	0.52	-0.8
2,125,742	+		HER17_RS09640	0.58	-1.0
2,125,906	-		HER17_RS09640	0.68	+1.8
2,125,950	-		HER17_RS09640	0.71	-1.4
2,125,952	-		HER17_RS09640	0.71	+1.9
2,125,952	-		HER17_RS09640	0.71	+1.3
2,125,952	-		HER17_RS09640	0.71	-0.4
2,125,955	+		HER17_RS09640	0.71	-0.3
2,125,956	-		HER17_RS09640	0.71	-0.3
2,125,956	-		HER17_RS09640	0.71	-0.5
2,125,982	-		HER17_RS09640	0.73	-0.1
2,125,991	+		HER17_RS09640	0.74	+2.1
2,125,992	-		HER17_RS09640	0.74	+1.3
2,126,011	+		HER17_RS09640	0.75	-0.4
2,126,011	+		HER17_RS09640	0.75	+2.3
2,126,011	+		HER17_RS09640	0.75	+0.0
2,126,012	-		HER17_RS09640	0.75	+0.7
2,126,066	+		HER17_RS09640	0.79	-0.1
2,126,066	+		HER17_RS09640	0.79	-1.0
2,126,066	+		HER17_RS09640	0.79	-2.0
2,126,066	+		HER17_RS09640	0.79	-0.4
2,126,066	+		HER17_RS09640	0.79	-0.0
2,126,066	+		HER17_RS09640	0.79	-2.0
2,126,066	+		HER17_RS09640	0.79	+0.3
2,126,066	+		HER17_RS09640	0.79	-1.0
2,126,066	+		HER17_RS09640	0.79	-1.2
2,126,066	+		HER17_RS09640	0.79	-2.0
2,126,067	-		HER17_RS09640	0.79	-1.8
2,126,067	-		HER17_RS09640	0.79	+0.6
2,126,067	-		HER17_RS09640	0.79	-0.4
2,126,067	-		HER17_RS09640	0.79	-0.3
2,126,067	-		HER17_RS09640	0.79	-0.7
2,126,067	-		HER17_RS09640	0.79	+2.5
2,126,068	+		HER17_RS09640	0.79	-1.4
2,126,069	-		HER17_RS09640	0.79	+0.2
2,126,123	-		HER17_RS09640	0.82	-1.3
2,126,168	+		HER17_RS09640	0.85	-1.4
2,126,168	+		HER17_RS09640	0.85	-0.8
2,126,234	+		HER17_RS09640	0.89	-2.8
2,126,235	-		HER17_RS09640	0.89	+0.7
2,126,241	-		HER17_RS09640	0.90	-0.0
2,126,270	+				-1.3
2,126,270	+				+0.3
2,126,270	+				+3.2
2,126,271	-				-1.4
2,126,271	-				-1.3
2,126,273	-				+0.6
2,126,309	+				+0.0
2,126,309	+				-2.5
2,126,309	+				-1.8
2,126,309	+				-0.8
2,126,310	-				-1.0
2,126,310	-				+1.8
2,126,310	-				-1.4
2,126,313	-				-1.3
2,126,313	-				+3.0
2,126,313	-				-0.0
2,126,313	-				-1.0
2,126,390	+				-0.8
2,126,390	+				-3.4
2,126,391	-				+2.1
2,126,391	-				-1.4
2,126,394	-				+2.5
2,126,399	+				+0.1
2,126,399	+				-1.4
2,126,399	+				-0.0
2,126,399	+				+1.8
2,126,400	-				-0.4
2,126,414	+				+0.1
2,126,414	+				+0.2
2,126,414	+				+0.6
2,126,438	-				-0.2
2,126,509	-				-0.6
2,126,531	+				+0.6
2,126,532	-				-0.3
2,126,593	+				+0.1
2,126,593	+				-1.0
2,126,606	-				-0.2
2,126,638	+				-0.7
2,126,638	+				+1.2
2,126,639	-				-1.0
2,126,647	+				-0.4
2,126,647	+				-0.4
2,126,653	+				+0.0
2,126,653	+				-0.3
2,126,668	+				+0.6
2,126,724	-				-0.4
2,126,760	+				-2.4
2,126,760	+				+1.5
2,126,761	-				+1.3
2,126,761	-				-3.0
2,126,987	-				-0.2
2,126,987	-				-0.5
2,126,993	+				+0.9
2,127,011	+				-0.2
2,127,011	+				+0.1
2,127,011	+				-0.7
2,127,012	-				-0.6
2,127,012	-				+0.5
2,127,162	-		HER17_RS09645	0.15	-1.8
2,127,183	+		HER17_RS09645	0.16	+0.4
2,127,237	+		HER17_RS09645	0.18	-1.5
2,127,365	+		HER17_RS09645	0.23	-1.8