Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06345

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
1,408,689	-				-0.9
1,408,733	-				-0.3
1,408,769	+				-0.4
1,408,769	+				-1.0
1,408,770	-				-0.8
1,408,770	-				-2.0
1,408,776	+				-1.8
1,408,776	+				+0.4
1,408,776	+				+1.8
1,408,776	+				-1.3
1,408,777	-				+0.1
1,408,777	-				-1.0
1,408,777	-				+0.1
1,408,777	-				+1.9
1,408,777	-				+0.4
1,408,777	-				+1.0
1,408,779	-				-0.2
1,408,830	-				+1.1
1,408,830	-				-0.9
1,408,830	-				+2.3
1,408,830	-				-1.8
1,408,830	-				-0.2
1,409,052	+				+0.4
1,409,053	-				-0.6
1,409,064	+				+1.5
1,409,064	+				+1.1
1,409,116	+				-0.4
1,409,135	-				+0.1
1,409,339	+		HER17_RS06340	0.60	-0.2
1,409,391	+		HER17_RS06340	0.75	-0.4
1,409,417	+		HER17_RS06340	0.83	-0.2
1,409,477	+				-0.2
1,409,477	+				+0.1
1,409,478	-				-1.7
1,409,478	-				+0.8
1,409,478	-				-3.2
1,409,498	-				-0.8
1,409,509	+				-0.4
1,409,509	+				+0.2
1,409,510	-				+0.1
1,409,510	-				+0.3
1,409,534	+				+1.7
1,409,534	+				+0.8
1,409,534	+				+2.7
1,409,535	-				+0.4
1,409,541	-				+1.0
1,409,600	+				-1.2
1,409,601	-				-0.1
1,409,601	-				+0.0
1,409,601	-				-1.0
1,409,633	-				-1.0
1,409,633	-				-1.8
1,409,644	+				-0.2
1,409,676	+				+1.0
1,409,676	+				+0.1
1,409,677	-				-1.3
1,409,677	-				-0.0
1,409,714	+				+0.3
1,409,715	-				-2.6
1,409,753	+				-2.2
1,409,753	+				-1.1
1,409,912	+		HER17_RS06345	0.14	-2.0
1,409,912	+		HER17_RS06345	0.14	-2.2
1,409,913	-		HER17_RS06345	0.14	-0.3
1,409,913	-		HER17_RS06345	0.14	-0.4
1,409,913	-		HER17_RS06345	0.14	-0.8
1,409,915	+		HER17_RS06345	0.14	+1.8
1,409,915	+		HER17_RS06345	0.14	-0.3
1,409,915	+		HER17_RS06345	0.14	-1.8
1,409,915	+		HER17_RS06345	0.14	+0.0
1,409,916	-		HER17_RS06345	0.14	+1.0
1,409,916	-		HER17_RS06345	0.14	-1.5
1,409,916	-		HER17_RS06345	0.14	-1.6
1,409,916	-		HER17_RS06345	0.14	-0.7
1,409,981	+		HER17_RS06345	0.17	+0.5
1,409,981	+		HER17_RS06345	0.17	-1.6
1,409,981	+		HER17_RS06345	0.17	-1.9
1,409,982	-		HER17_RS06345	0.17	-0.8
1,409,982	-		HER17_RS06345	0.17	-0.8
1,410,016	+		HER17_RS06345	0.19	-1.2
1,410,017	-		HER17_RS06345	0.19	+0.4
1,410,034	+		HER17_RS06345	0.20	-1.5
1,410,035	-		HER17_RS06345	0.20	-1.8
1,410,104	+		HER17_RS06345	0.23	+1.1
1,410,105	-		HER17_RS06345	0.23	-0.2
1,410,209	+		HER17_RS06345	0.28	-1.8
1,410,209	+		HER17_RS06345	0.28	-2.0
1,410,281	+		HER17_RS06345	0.32	-2.0
1,410,281	+		HER17_RS06345	0.32	-1.3
1,410,282	-		HER17_RS06345	0.32	+0.5
1,410,282	-		HER17_RS06345	0.32	-0.9
1,410,282	-		HER17_RS06345	0.32	-0.6
1,410,282	-		HER17_RS06345	0.32	-1.0
1,410,369	+		HER17_RS06345	0.36	-0.8
1,410,369	+		HER17_RS06345	0.36	-0.2
1,410,370	-		HER17_RS06345	0.36	-1.0
1,410,370	-		HER17_RS06345	0.36	-1.7
1,410,370	-		HER17_RS06345	0.36	-1.5
1,410,370	-		HER17_RS06345	0.36	-0.6
1,410,399	-		HER17_RS06345	0.38	-2.0
1,410,399	-		HER17_RS06345	0.38	+2.6
1,410,520	+		HER17_RS06345	0.43	+0.4
1,410,520	+		HER17_RS06345	0.43	-0.6
1,410,520	+		HER17_RS06345	0.43	+0.6
1,410,520	+		HER17_RS06345	0.43	-0.5
1,410,520	+		HER17_RS06345	0.43	-0.2
1,410,520	+		HER17_RS06345	0.43	+1.0
1,410,520	+		HER17_RS06345	0.43	-2.2
1,410,520	+		HER17_RS06345	0.43	-0.6
1,410,520	+		HER17_RS06345	0.43	-2.0
1,410,521	-		HER17_RS06345	0.43	-1.2
1,410,521	-		HER17_RS06345	0.43	+0.0
1,410,521	-		HER17_RS06345	0.43	-1.1
1,410,521	-		HER17_RS06345	0.43	-1.2
1,410,521	-		HER17_RS06345	0.43	-0.2
1,410,521	-		HER17_RS06345	0.43	-0.3
1,410,521	-		HER17_RS06345	0.43	-0.8
1,410,564	+		HER17_RS06345	0.46	+0.8
1,410,564	+		HER17_RS06345	0.46	-1.6
1,410,564	+		HER17_RS06345	0.46	-2.2
1,410,564	+		HER17_RS06345	0.46	-1.8
1,410,565	-		HER17_RS06345	0.46	-0.8
1,410,565	-		HER17_RS06345	0.46	+1.3
1,410,565	-		HER17_RS06345	0.46	+0.1
1,410,755	+		HER17_RS06345	0.55	+0.7
1,410,781	-		HER17_RS06345	0.56	-2.8
1,410,798	-		HER17_RS06345	0.57	+0.8
1,410,854	+		HER17_RS06345	0.60	-2.1
1,410,912	-		HER17_RS06345	0.62	-1.2
1,410,912	-		HER17_RS06345	0.62	+0.5
1,410,917	+		HER17_RS06345	0.63	-0.8
1,410,917	+		HER17_RS06345	0.63	+1.7
1,410,918	-		HER17_RS06345	0.63	-0.3
1,411,075	+		HER17_RS06345	0.70	-0.5
1,411,094	+		HER17_RS06345	0.71	-1.5
1,411,094	+		HER17_RS06345	0.71	-1.6
1,411,094	+		HER17_RS06345	0.71	-0.3
1,411,095	-		HER17_RS06345	0.71	-0.2
1,411,095	-		HER17_RS06345	0.71	-1.5
1,411,095	-		HER17_RS06345	0.71	-0.8
1,411,095	-		HER17_RS06345	0.71	-1.2
1,411,128	+		HER17_RS06345	0.73	-0.5
1,411,142	-		HER17_RS06345	0.74	-1.6
1,411,142	-		HER17_RS06345	0.74	-0.2
1,411,142	-		HER17_RS06345	0.74	-0.2
1,411,214	+		HER17_RS06345	0.77	-0.5
1,411,214	+		HER17_RS06345	0.77	-2.2
1,411,215	-		HER17_RS06345	0.77	-0.2
1,411,227	+		HER17_RS06345	0.78	+2.0
1,411,227	+		HER17_RS06345	0.78	+1.3
1,411,362	+		HER17_RS06345	0.84	+1.5
1,411,370	-		HER17_RS06345	0.85	-1.5
1,411,375	+		HER17_RS06345	0.85	-1.8
1,411,375	+		HER17_RS06345	0.85	-0.6
1,411,375	+		HER17_RS06345	0.85	-0.0
1,411,375	+		HER17_RS06345	0.85	-0.6
1,411,375	+		HER17_RS06345	0.85	-0.5
1,411,375	+		HER17_RS06345	0.85	-0.6
1,411,375	+		HER17_RS06345	0.85	+2.8
1,411,375	+		HER17_RS06345	0.85	+1.4
1,411,376	-		HER17_RS06345	0.85	-0.9
1,411,376	-		HER17_RS06345	0.85	-3.3
1,411,376	-		HER17_RS06345	0.85	-0.6
1,411,379	-		HER17_RS06345	0.85	+1.0
1,411,379	-		HER17_RS06345	0.85	-0.2
1,411,379	-		HER17_RS06345	0.85	+0.3
1,411,389	-		HER17_RS06345	0.86	-1.9
1,411,446	+		HER17_RS06345	0.88	+0.5
1,411,447	-		HER17_RS06345	0.88	+0.2
1,411,447	-		HER17_RS06345	0.88	-0.2
1,411,447	-		HER17_RS06345	0.88	-0.5
1,411,447	-		HER17_RS06345	0.88	+0.4
1,411,447	-		HER17_RS06345	0.88	+2.8
1,411,447	-		HER17_RS06345	0.88	-2.2
1,411,457	+		HER17_RS06345	0.89	+2.8
1,411,457	+		HER17_RS06345	0.89	-0.6
1,411,457	+		HER17_RS06345	0.89	-0.0
1,411,458	-		HER17_RS06345	0.89	-1.2
1,411,626	+				-0.9
1,411,628	+				+0.4
1,411,628	+				-0.9
1,411,629	-				-1.0
1,411,629	-				+0.0
1,411,629	-				-1.2
1,411,728	-				+2.6
1,411,728	-				-1.2
1,411,734	+				-0.2
1,411,735	-				+1.2
1,411,735	-				+1.5
1,411,757	+				+0.6
1,411,757	+				-0.8
1,411,757	+				+0.8
1,411,757	+				-0.8
1,411,757	+				+0.4
1,411,757	+				-1.0
1,411,758	-				+0.3
1,411,758	-				-0.1
1,411,760	+				+0.0
1,411,760	+				-1.0
1,411,760	+				+0.5
1,411,760	+				+1.8
1,411,760	+				+3.7
1,411,760	+				-0.8
1,411,760	+				+0.8
1,411,761	-				+0.6
1,411,761	-				-0.5
1,411,761	-				+1.0
1,411,761	-				+0.3
1,411,830	+				-1.0
1,411,830	+				-0.2
1,411,831	-				-1.2
1,411,893	+		HER17_RS06350	0.13	+0.3
1,411,894	-		HER17_RS06350	0.14	+0.5
1,411,894	-		HER17_RS06350	0.14	+2.1
1,411,956	+		HER17_RS06350	0.19	-2.5
1,412,052	+		HER17_RS06350	0.27	-0.3
1,412,052	+		HER17_RS06350	0.27	+0.8
1,412,052	+		HER17_RS06350	0.27	-1.7
1,412,052	+		HER17_RS06350	0.27	-0.2
1,412,053	-		HER17_RS06350	0.27	-0.6
1,412,058	+		HER17_RS06350	0.27	-0.1
1,412,086	+		HER17_RS06350	0.30	-0.8
1,412,087	-		HER17_RS06350	0.30	-1.2
1,412,087	-		HER17_RS06350	0.30	+0.5
1,412,091	+		HER17_RS06350	0.30	+0.3
1,412,091	+		HER17_RS06350	0.30	-0.5
1,412,119	-		HER17_RS06350	0.32	-0.9
1,412,148	+		HER17_RS06350	0.35	-1.0
1,412,148	+		HER17_RS06350	0.35	+0.2
1,412,155	-		HER17_RS06350	0.35	+1.8
1,412,188	+		HER17_RS06350	0.38	+2.7
1,412,189	-		HER17_RS06350	0.38	-2.2
1,412,189	-		HER17_RS06350	0.38	-1.2
1,412,189	-		HER17_RS06350	0.38	-1.0
1,412,189	-		HER17_RS06350	0.38	-1.9
1,412,218	+		HER17_RS06350	0.41	-1.0
1,412,282	+		HER17_RS06350	0.46	+1.1
1,412,283	-		HER17_RS06350	0.46	-0.2
1,412,463	+		HER17_RS06350	0.61	+0.7
1,412,463	+		HER17_RS06350	0.61	-0.2
1,412,463	+		HER17_RS06350	0.61	-1.4
1,412,464	-		HER17_RS06350	0.61	-2.3
1,412,471	+		HER17_RS06350	0.62	-0.0
1,412,471	+		HER17_RS06350	0.62	+1.3
1,412,471	+		HER17_RS06350	0.62	+0.4
1,412,472	-		HER17_RS06350	0.62	-0.2