Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05925

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
1,315,017	-				-0.4
1,315,017	-				-2.5
1,315,056	-				-0.2
1,315,060	+				-0.1
1,315,074	+				-0.4
1,315,075	-				-0.7
1,315,109	-				+0.4
1,315,109	-				+1.0
1,315,126	-				-2.0
1,315,140	+				+0.8
1,315,141	-				-0.3
1,315,141	-				+0.5
1,315,144	+				+0.9
1,315,145	-				-1.1
1,315,187	-				-0.1
1,315,244	+		HER17_RS05920	0.12	-0.7
1,315,245	-		HER17_RS05920	0.12	+1.2
1,315,245	-		HER17_RS05920	0.12	+0.3
1,315,248	-		HER17_RS05920	0.12	+0.8
1,315,248	-		HER17_RS05920	0.12	+0.9
1,315,289	+		HER17_RS05920	0.17	+0.5
1,315,290	-		HER17_RS05920	0.17	-0.7
1,315,290	-		HER17_RS05920	0.17	+1.3
1,315,351	+		HER17_RS05920	0.24	+1.0
1,315,351	+		HER17_RS05920	0.24	-0.6
1,315,351	+		HER17_RS05920	0.24	-0.2
1,315,352	-		HER17_RS05920	0.24	+0.4
1,315,383	+		HER17_RS05920	0.28	+1.7
1,315,463	+		HER17_RS05920	0.37	-1.3
1,315,464	-		HER17_RS05920	0.37	+0.7
1,315,482	-		HER17_RS05920	0.39	-0.5
1,315,512	-		HER17_RS05920	0.43	-0.5
1,315,512	-		HER17_RS05920	0.43	-0.0
1,315,512	-		HER17_RS05920	0.43	+0.9
1,315,514	+		HER17_RS05920	0.43	+0.1
1,315,555	+		HER17_RS05920	0.48	+1.4
1,315,556	-		HER17_RS05920	0.48	-0.2
1,315,556	-		HER17_RS05920	0.48	-0.1
1,315,654	-		HER17_RS05920	0.60	-0.4
1,315,655	+		HER17_RS05920	0.60	-0.6
1,315,656	-		HER17_RS05920	0.60	-1.2
1,315,656	-		HER17_RS05920	0.60	+0.3
1,315,687	+		HER17_RS05920	0.63	+2.7
1,315,687	+		HER17_RS05920	0.63	-1.4
1,315,688	-		HER17_RS05920	0.64	-0.0
1,315,790	+		HER17_RS05920	0.76	-1.6
1,315,838	+		HER17_RS05920	0.81	-1.9
1,315,928	+				-0.7
1,315,928	+				-2.5
1,315,928	+				+0.9
1,315,929	-				+0.0
1,315,929	-				-0.1
1,315,929	-				+2.7
1,315,929	-				+0.6
1,315,929	-				-0.9
1,315,929	-				-0.7
1,315,932	+				+0.4
1,315,932	+				+0.8
1,315,932	+				+0.8
1,315,932	+				+0.3
1,315,932	+				-1.1
1,315,933	-				-0.3
1,315,933	-				-0.4
1,315,933	-				-0.8
1,315,933	-				-1.1
1,315,933	-				-0.9
1,315,933	-				+1.9
1,315,933	-				-1.9
1,315,934	+				-0.6
1,315,955	+				+1.2
1,315,956	-				+0.9
1,315,956	-				+0.1
1,316,019	+				+0.7
1,316,087	-				-0.7
1,316,295	+		HER17_RS05925	0.22	-0.1
1,316,295	+		HER17_RS05925	0.22	+0.3
1,316,296	-		HER17_RS05925	0.23	-2.7
1,316,296	-		HER17_RS05925	0.23	+1.0
1,316,299	+		HER17_RS05925	0.23	-2.1
1,316,300	-		HER17_RS05925	0.23	+1.6
1,316,337	-		HER17_RS05925	0.26	-0.6
1,316,422	+		HER17_RS05925	0.32	+0.9
1,316,422	+		HER17_RS05925	0.32	-0.1
1,316,422	+		HER17_RS05925	0.32	-2.8
1,316,423	-		HER17_RS05925	0.32	-2.0
1,316,423	-		HER17_RS05925	0.32	+0.6
1,316,423	-		HER17_RS05925	0.32	+2.3
1,316,423	-		HER17_RS05925	0.32	-2.3
1,316,569	+		HER17_RS05925	0.43	-0.6
1,316,734	+		HER17_RS05925	0.55	+1.2
1,316,800	+		HER17_RS05925	0.60	+0.0
1,316,801	-		HER17_RS05925	0.60	+1.0
1,316,812	+		HER17_RS05925	0.61	+1.5
1,316,876	+		HER17_RS05925	0.66	-1.4
1,316,877	-		HER17_RS05925	0.66	+0.1
1,316,877	-		HER17_RS05925	0.66	+0.9
1,316,958	+		HER17_RS05925	0.72	+0.2
1,316,959	-		HER17_RS05925	0.72	+0.5
1,316,959	-		HER17_RS05925	0.72	-0.2
1,316,959	-		HER17_RS05925	0.72	-0.6
1,316,959	-		HER17_RS05925	0.72	-1.1
1,316,959	-		HER17_RS05925	0.72	+0.7
1,316,959	-		HER17_RS05925	0.72	-2.6
1,317,196	+		HER17_RS05925	0.90	+0.9
1,317,197	-		HER17_RS05925	0.90	-0.5
1,317,200	+				-1.5
1,317,200	+				+3.2
1,317,201	-				+2.0
1,317,201	-				+0.1
1,317,201	-				-2.4
1,317,213	+				-0.6
1,317,214	-				+0.9
1,317,214	-				-2.3
1,317,446	+				-1.1
1,317,446	+				+0.9
1,317,446	+				+0.6
1,317,446	+				-1.1
1,317,446	+				-1.2
1,317,447	-				+1.9
1,317,447	-				-2.3
1,317,447	-				-1.1
1,317,447	-				+2.5
1,317,447	-				-1.4
1,317,447	-				-1.7
1,317,447	-				-1.9
1,317,447	-				-1.1
1,317,447	-				+1.6
1,317,489	-				+2.2
1,317,491	+				+0.6
1,317,491	+				-2.7
1,317,491	+				+0.9
1,317,515	-		HER17_RS05930	0.14	-0.4
1,317,603	+		HER17_RS05930	0.40	-1.7
1,317,618	+		HER17_RS05930	0.44	-0.1
1,317,618	+		HER17_RS05930	0.44	-0.7
1,317,618	+		HER17_RS05930	0.44	+0.5
1,317,619	-		HER17_RS05930	0.45	-1.1
1,317,619	-		HER17_RS05930	0.45	-2.3
1,317,619	-		HER17_RS05930	0.45	-1.3
1,317,619	-		HER17_RS05930	0.45	-0.7
1,317,619	-		HER17_RS05930	0.45	-0.4
1,317,619	-		HER17_RS05930	0.45	+0.2
1,317,619	-		HER17_RS05930	0.45	-2.6
1,317,619	-		HER17_RS05930	0.45	-0.3
1,317,643	+		HER17_RS05930	0.52	-0.5
1,317,829	-				-0.6
1,317,829	-				+0.9
1,317,829	-				-1.4
1,317,865	+				-1.7
1,317,865	+				-1.1
1,317,865	+				+0.6
1,317,865	+				-0.4
1,317,866	-				-1.1
1,317,866	-				-0.4
1,317,917	+				+1.2
1,317,920	-				+0.5
1,317,920	-				+0.0
1,317,920	-				-0.1
1,317,942	+				+0.0
1,317,943	-				-0.4
1,317,989	+		HER17_RS05935	0.11	+0.7
1,317,989	+		HER17_RS05935	0.11	+1.8
1,317,990	-		HER17_RS05935	0.11	+0.9
1,317,990	-		HER17_RS05935	0.11	-1.8
1,318,019	-		HER17_RS05935	0.14	-1.4
1,318,043	+		HER17_RS05935	0.16	+1.2
1,318,044	-		HER17_RS05935	0.16	+0.1
1,318,072	+		HER17_RS05935	0.19	-0.1
1,318,072	+		HER17_RS05935	0.19	+0.1
1,318,072	+		HER17_RS05935	0.19	-2.1
1,318,073	-		HER17_RS05935	0.19	+1.2
1,318,073	-		HER17_RS05935	0.19	-0.9
1,318,073	-		HER17_RS05935	0.19	-1.9
1,318,073	-		HER17_RS05935	0.19	-1.7
1,318,125	-		HER17_RS05935	0.24	+0.4
1,318,125	-		HER17_RS05935	0.24	-1.4
1,318,125	-		HER17_RS05935	0.24	-1.4
1,318,215	-		HER17_RS05935	0.32	-0.2
1,318,233	-		HER17_RS05935	0.33	-0.1
1,318,256	+		HER17_RS05935	0.35	-1.0
1,318,257	-		HER17_RS05935	0.36	-2.1