Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05910

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
1,308,109	+		HER17_RS05905	0.50	-1.5
1,308,109	+		HER17_RS05905	0.50	+0.3
1,308,110	-		HER17_RS05905	0.50	-1.1
1,308,110	-		HER17_RS05905	0.50	-1.4
1,308,110	-		HER17_RS05905	0.50	-1.0
1,308,111	+		HER17_RS05905	0.50	+0.1
1,308,111	+		HER17_RS05905	0.50	-0.7
1,308,111	+		HER17_RS05905	0.50	-0.8
1,308,111	+		HER17_RS05905	0.50	-0.8
1,308,111	+		HER17_RS05905	0.50	-0.7
1,308,112	-		HER17_RS05905	0.50	+0.8
1,308,179	+		HER17_RS05905	0.54	-1.2
1,308,180	-		HER17_RS05905	0.55	-0.1
1,308,208	+		HER17_RS05905	0.56	-0.7
1,308,208	+		HER17_RS05905	0.56	-2.5
1,308,208	+		HER17_RS05905	0.56	-2.1
1,308,208	+		HER17_RS05905	0.56	-1.5
1,308,208	+		HER17_RS05905	0.56	+2.4
1,308,209	-		HER17_RS05905	0.56	-1.1
1,308,209	-		HER17_RS05905	0.56	-0.9
1,308,209	-		HER17_RS05905	0.56	+1.9
1,308,209	-		HER17_RS05905	0.56	-0.1
1,308,209	-		HER17_RS05905	0.56	+2.2
1,308,210	+		HER17_RS05905	0.57	-0.1
1,308,211	-		HER17_RS05905	0.57	+0.1
1,308,243	-		HER17_RS05905	0.59	+1.2
1,308,243	-		HER17_RS05905	0.59	-2.9
1,308,243	-		HER17_RS05905	0.59	-1.1
1,308,282	-		HER17_RS05905	0.61	-0.9
1,308,306	-		HER17_RS05905	0.63	-0.9
1,308,320	-		HER17_RS05905	0.64	+0.9
1,308,426	+		HER17_RS05905	0.71	-0.2
1,308,427	-		HER17_RS05905	0.71	-0.2
1,308,429	+		HER17_RS05905	0.71	-1.7
1,308,430	-		HER17_RS05905	0.71	-1.0
1,308,430	-		HER17_RS05905	0.71	-0.5
1,308,430	-		HER17_RS05905	0.71	+1.5
1,308,430	-		HER17_RS05905	0.71	-1.4
1,308,472	-		HER17_RS05905	0.74	+0.2
1,308,472	-		HER17_RS05905	0.74	-0.1
1,308,472	-		HER17_RS05905	0.74	-1.1
1,308,636	+		HER17_RS05905	0.85	+0.1
1,308,637	-		HER17_RS05905	0.85	-0.7
1,308,664	+		HER17_RS05905	0.87	+0.4
1,308,665	-		HER17_RS05905	0.87	-0.4
1,308,665	-		HER17_RS05905	0.87	-0.4
1,308,701	+		HER17_RS05905	0.89	-1.0
1,308,702	-		HER17_RS05905	0.89	-0.8
1,308,702	-		HER17_RS05905	0.89	-0.1
1,308,730	+				+0.3
1,308,730	+				-0.1
1,308,730	+				-0.8
1,308,730	+				-1.1
1,308,731	-				-0.5
1,308,731	-				-0.4
1,308,755	+				+2.6
1,308,755	+				+1.2
1,308,804	+				+0.3
1,308,916	-				+0.1
1,309,002	+				+0.4
1,309,002	+				-1.0
1,309,002	+				+0.6
1,309,004	+				+0.0
1,309,004	+				+0.9
1,309,005	-				-1.9
1,309,005	-				-2.0
1,309,005	-				+0.9
1,309,007	+				+1.3
1,309,007	+				+0.9
1,309,008	-				-0.4
1,309,008	-				-0.8
1,309,076	+				+0.8
1,309,076	+				+0.4
1,309,076	+				-0.7
1,309,126	+				-1.7
1,309,129	+				+0.2
1,309,130	-				-0.7
1,309,178	+				-3.3
1,309,178	+				-1.1
1,309,179	-				-2.9
1,309,179	-				+0.6
1,309,179	-				-0.9
1,309,179	-				-1.1
1,309,188	-				-0.1
1,309,188	-				+0.9
1,309,188	-				-2.2
1,309,188	-				-1.1
1,309,192	-				-1.4
1,309,259	+				-0.2
1,309,260	-				+0.4
1,309,260	-				+0.5
1,309,366	+				-1.1
1,309,367	-				-3.0
1,309,386	+				+0.9
1,309,415	+				+0.1
1,309,415	+				-0.6
1,309,415	+				-0.2
1,309,415	+				-2.1
1,309,416	-				-1.1
1,309,416	-				-1.3
1,309,417	+				-0.7
1,309,499	-		HER17_RS05910	0.11	-2.8
1,309,499	-		HER17_RS05910	0.11	-0.1
1,309,697	+		HER17_RS05910	0.16	+0.3
1,309,697	+		HER17_RS05910	0.16	+0.2
1,309,697	+		HER17_RS05910	0.16	-0.7
1,309,697	+		HER17_RS05910	0.16	-2.4
1,309,697	+		HER17_RS05910	0.16	-0.7
1,309,697	+		HER17_RS05910	0.16	+0.9
1,309,697	+		HER17_RS05910	0.16	-2.4
1,309,698	-		HER17_RS05910	0.16	+0.9
1,309,698	-		HER17_RS05910	0.16	-1.3
1,309,698	-		HER17_RS05910	0.16	-0.5
1,309,698	-		HER17_RS05910	0.16	-0.1
1,309,698	-		HER17_RS05910	0.16	+0.6
1,309,698	-		HER17_RS05910	0.16	+2.1
1,309,698	-		HER17_RS05910	0.16	-1.4
1,309,698	-		HER17_RS05910	0.16	-1.7
1,309,698	-		HER17_RS05910	0.16	-1.4
1,309,698	-		HER17_RS05910	0.16	-1.7
1,309,699	+		HER17_RS05910	0.16	-0.4
1,309,699	+		HER17_RS05910	0.16	-0.7
1,309,699	+		HER17_RS05910	0.16	-1.1
1,309,700	-		HER17_RS05910	0.16	-0.6
1,309,700	-		HER17_RS05910	0.16	-1.1
1,309,844	+		HER17_RS05910	0.20	-2.0
1,309,845	-		HER17_RS05910	0.20	-1.1
1,309,845	-		HER17_RS05910	0.20	-1.4
1,309,845	-		HER17_RS05910	0.20	-0.3
1,309,847	-		HER17_RS05910	0.20	-0.8
1,309,892	+		HER17_RS05910	0.21	-1.3
1,309,893	-		HER17_RS05910	0.21	+2.5
1,309,913	+		HER17_RS05910	0.21	+0.5
1,309,914	-		HER17_RS05910	0.21	-1.9
1,309,914	-		HER17_RS05910	0.21	+0.8
1,309,914	-		HER17_RS05910	0.21	+1.5
1,309,914	-		HER17_RS05910	0.21	-1.3
1,309,914	-		HER17_RS05910	0.21	-1.4
1,309,914	-		HER17_RS05910	0.21	-0.7
1,309,914	-		HER17_RS05910	0.21	-2.4
1,309,914	-		HER17_RS05910	0.21	-0.0
1,309,919	+		HER17_RS05910	0.22	-2.4
1,309,919	+		HER17_RS05910	0.22	+1.1
1,309,939	+		HER17_RS05910	0.22	-1.7
1,309,940	-		HER17_RS05910	0.22	-2.1
1,309,940	-		HER17_RS05910	0.22	-1.1
1,310,152	+		HER17_RS05910	0.28	+0.4
1,310,152	+		HER17_RS05910	0.28	-1.1
1,310,152	+		HER17_RS05910	0.28	-2.0
1,310,152	+		HER17_RS05910	0.28	-1.8
1,310,152	+		HER17_RS05910	0.28	-0.1
1,310,153	-		HER17_RS05910	0.28	-1.5
1,310,153	-		HER17_RS05910	0.28	-0.1
1,310,249	-		HER17_RS05910	0.30	-1.8
1,310,252	+		HER17_RS05910	0.30	+0.7
1,310,253	-		HER17_RS05910	0.30	-0.9
1,310,253	-		HER17_RS05910	0.30	+0.9
1,310,253	-		HER17_RS05910	0.30	+0.9
1,310,253	-		HER17_RS05910	0.30	-2.0
1,310,302	+		HER17_RS05910	0.31	-0.7
1,310,303	-		HER17_RS05910	0.31	+0.7
1,310,333	-		HER17_RS05910	0.32	-3.0
1,310,391	+		HER17_RS05910	0.34	-1.0
1,310,392	-		HER17_RS05910	0.34	-0.1
1,310,392	-		HER17_RS05910	0.34	-1.9
1,310,443	+		HER17_RS05910	0.35	-2.3
1,310,443	+		HER17_RS05910	0.35	+0.4
1,310,443	+		HER17_RS05910	0.35	-1.4
1,310,444	-		HER17_RS05910	0.35	-1.1
1,310,444	-		HER17_RS05910	0.35	-0.4
1,310,444	-		HER17_RS05910	0.35	-1.7
1,310,488	-		HER17_RS05910	0.36	-2.4
1,310,665	+		HER17_RS05910	0.41	-2.3
1,310,710	+		HER17_RS05910	0.42	-0.1
1,310,711	-		HER17_RS05910	0.42	-3.0
1,310,729	+		HER17_RS05910	0.42	-1.7
1,310,729	+		HER17_RS05910	0.42	-1.2
1,310,730	-		HER17_RS05910	0.42	-1.7
1,310,798	+		HER17_RS05910	0.44	-2.5
1,310,799	-		HER17_RS05910	0.44	+1.9
1,310,877	+		HER17_RS05910	0.46	-0.1
1,310,878	-		HER17_RS05910	0.46	+0.3
1,310,947	+		HER17_RS05910	0.48	-0.7
1,310,973	-		HER17_RS05910	0.49	-0.7
1,310,973	-		HER17_RS05910	0.49	-1.4
1,310,973	-		HER17_RS05910	0.49	-0.1
1,311,146	+		HER17_RS05910	0.53	-1.9
1,311,146	+		HER17_RS05910	0.53	-3.6
1,311,146	+		HER17_RS05910	0.53	-0.7
1,311,147	-		HER17_RS05910	0.53	+0.2
1,311,147	-		HER17_RS05910	0.53	-1.1
1,311,147	-		HER17_RS05910	0.53	-0.7
1,311,147	-		HER17_RS05910	0.53	-0.1
1,311,147	-		HER17_RS05910	0.53	-1.9
1,311,196	+		HER17_RS05910	0.54	+0.2
1,311,690	+		HER17_RS05910	0.67	-0.4
1,311,691	-		HER17_RS05910	0.67	+0.9
1,311,757	+		HER17_RS05910	0.69	+2.5
1,311,827	-		HER17_RS05910	0.71	+1.9
1,311,941	+		HER17_RS05910	0.74	+0.7
1,311,942	-		HER17_RS05910	0.74	-1.4
1,312,072	+		HER17_RS05910	0.77	+0.1
1,312,178	+		HER17_RS05910	0.80	-0.7
1,312,178	+		HER17_RS05910	0.80	-0.1
1,312,178	+		HER17_RS05910	0.80	-1.9
1,312,178	+		HER17_RS05910	0.80	+1.9
1,312,179	-		HER17_RS05910	0.80	-0.7
1,312,179	-		HER17_RS05910	0.80	-1.1
1,312,179	-		HER17_RS05910	0.80	-0.4
1,312,179	-		HER17_RS05910	0.80	-0.7
1,312,179	-		HER17_RS05910	0.80	-0.1
1,312,179	-		HER17_RS05910	0.80	-1.1
1,312,179	-		HER17_RS05910	0.80	-1.7
1,312,179	-		HER17_RS05910	0.80	-0.1
1,312,179	-		HER17_RS05910	0.80	-1.4
1,312,181	-		HER17_RS05910	0.80	+2.8
1,312,181	-		HER17_RS05910	0.80	-0.5
1,312,181	-		HER17_RS05910	0.80	+1.9
1,312,181	-		HER17_RS05910	0.80	-1.0
1,312,294	+		HER17_RS05910	0.83	-1.2
1,312,295	-		HER17_RS05910	0.83	-0.7
1,312,367	+		HER17_RS05910	0.84	-2.1
1,312,368	-		HER17_RS05910	0.85	+1.2
1,312,368	-		HER17_RS05910	0.85	+0.6
1,312,428	+		HER17_RS05910	0.86	-1.8
1,312,741	-				-2.1
1,312,745	+				-2.8
1,312,746	-				-2.4
1,312,746	-				-1.7
1,312,746	-				-1.0
1,312,746	-				-2.4
1,312,748	-				-1.1
1,312,748	-				-0.7
1,312,748	-				-1.4
1,312,767	+				+0.4
1,312,810	+				-1.1
1,312,811	-				+0.3
1,312,888	+				-1.4
1,312,889	-				-1.4
1,312,936	+				+1.4
1,312,936	+				-1.1
1,312,937	-				-1.7
1,312,937	-				-0.1
1,312,972	+				+0.5
1,312,972	+				-2.1
1,312,972	+				-2.1
1,312,973	-				+0.2
1,313,010	-				+0.3
1,313,118	-				-0.4
1,313,134	-				+0.4
1,313,265	+				-0.7
1,313,265	+				+0.2
1,313,316	+				-0.9
1,313,339	+				-1.9
1,313,339	+				-2.3
1,313,373	+				+0.4
1,313,414	+				-0.4
1,313,453	-				+1.2
1,313,461	-				+0.1
1,313,583	+				-0.7
1,313,583	+				+0.7
1,313,583	+				+0.5
1,313,583	+				-2.7
1,313,583	+				-0.7
1,313,584	-				-1.5
1,313,584	-				-1.0
1,313,584	-				+0.9
1,313,584	-				-0.1
1,313,584	-				-0.8
1,313,584	-				+2.1
1,313,584	-				+2.2
1,313,584	-				+0.2
1,313,584	-				-1.1
1,313,584	-				+0.4
1,313,591	+				-0.8
1,313,591	+				-0.1
1,313,592	-				+0.2
1,313,592	-				+2.2
1,313,626	+				+2.2
1,313,627	-				-1.1
1,313,648	-				-1.1
1,313,648	-				+0.5
1,313,649	+				-1.0
1,313,661	-				+0.5
1,313,717	-				+0.0
1,313,743	+				-0.6
1,313,743	+				+2.6
1,313,743	+				-0.1
1,313,743	+				+0.1
1,313,744	-				-1.4
1,313,748	-				+0.2
1,313,748	-				-0.2
1,313,748	-				-0.9
1,313,790	+				+0.3
1,313,790	+				-0.9
1,313,909	+		HER17_RS05915	0.15	-0.6
1,313,910	-		HER17_RS05915	0.15	-0.1
1,313,910	-		HER17_RS05915	0.15	+0.2
1,313,922	+		HER17_RS05915	0.16	+1.0
1,313,959	-		HER17_RS05915	0.19	-0.4