Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04490

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
1,020,737	+		HER17_RS04485	0.34	-1.7
1,020,738	-		HER17_RS04485	0.34	+2.4
1,020,809	+		HER17_RS04485	0.40	-2.0
1,020,833	+		HER17_RS04485	0.42	-1.6
1,020,834	-		HER17_RS04485	0.42	-1.0
1,020,936	+		HER17_RS04485	0.50	-2.3
1,021,023	+		HER17_RS04485	0.57	-1.0
1,021,023	+		HER17_RS04485	0.57	+0.1
1,021,024	-		HER17_RS04485	0.57	-0.6
1,021,310	-		HER17_RS04485	0.81	+0.0
1,021,331	+		HER17_RS04485	0.82	+0.2
1,021,388	-		HER17_RS04485	0.87	-1.0
1,021,440	+				+1.4
1,021,440	+				-1.8
1,021,440	+				+0.1
1,021,441	-				+0.2
1,021,441	-				-0.4
1,021,441	-				-1.1
1,021,441	-				-0.7
1,021,441	-				+1.0
1,021,441	-				+0.4
1,021,441	-				+0.0
1,021,441	-				-0.2
1,021,441	-				+1.5
1,021,477	+				-0.2
1,021,477	+				-1.1
1,021,477	+				-0.6
1,021,477	+				+1.1
1,021,477	+				+1.2
1,021,477	+				+0.5
1,021,477	+				-1.3
1,021,477	+				-2.6
1,021,478	-				-1.1
1,021,478	-				-1.4
1,021,478	-				+0.5
1,021,478	-				+1.0
1,021,478	-				-0.6
1,021,546	+				+1.3
1,021,546	+				-0.6
1,021,546	+				-1.5
1,021,546	+				+0.0
1,021,546	+				+0.8
1,021,546	+				+0.6
1,021,546	+				+3.4
1,021,546	+				-1.0
1,021,547	-				-0.6
1,021,547	-				+1.3
1,021,547	-				-1.1
1,021,547	-				+2.1
1,021,570	-				-0.2
1,021,570	-				-1.1
1,021,582	+				-0.6
1,021,582	+				-1.1
1,021,582	+				-1.8
1,021,582	+				-2.0
1,021,582	+				-1.9
1,021,583	-				-1.4
1,021,583	-				+0.8
1,021,583	-				+0.4
1,021,583	-				+0.0
1,021,584	+				+0.1
1,021,584	+				+3.1
1,021,584	+				+0.8
1,021,584	+				-0.1
1,021,585	-				-0.6
1,021,585	-				+1.0
1,021,602	-				+3.0
1,021,617	+				-1.8
1,021,618	-				-2.9
1,021,663	+				+0.1
1,021,663	+				-0.3
1,021,664	-				+0.1
1,021,664	-				+0.3
1,021,664	-				+0.4
1,021,668	+				-1.6
1,021,682	+				+0.2
1,021,682	+				+0.8
1,021,704	+				-1.3
1,021,704	+				-0.6
1,021,704	+				-1.0
1,021,704	+				-1.1
1,021,704	+				+0.2
1,021,705	-				+0.0
1,021,705	-				+1.0
1,021,718	-				+1.4
1,021,816	+				-0.8
1,021,817	-				+1.2
1,021,817	-				+6.6
1,021,841	+		HER17_RS04490	0.12	-1.1
1,021,852	+		HER17_RS04490	0.13	-0.0
1,021,853	-		HER17_RS04490	0.13	-0.4
1,021,863	+		HER17_RS04490	0.14	-0.6
1,021,881	-		HER17_RS04490	0.15	-1.1
1,021,881	-		HER17_RS04490	0.15	+3.2
1,021,881	-		HER17_RS04490	0.15	-0.8
1,021,954	+		HER17_RS04490	0.22	-1.1
1,021,993	+		HER17_RS04490	0.25	-1.6
1,021,993	+		HER17_RS04490	0.25	-1.0
1,021,995	+		HER17_RS04490	0.25	+3.0
1,021,995	+		HER17_RS04490	0.25	-0.4
1,022,008	-		HER17_RS04490	0.26	-0.3
1,022,062	+		HER17_RS04490	0.31	-0.1
1,022,062	+		HER17_RS04490	0.31	-0.3
1,022,062	+		HER17_RS04490	0.31	+0.4
1,022,062	+		HER17_RS04490	0.31	+0.7
1,022,062	+		HER17_RS04490	0.31	-0.3
1,022,062	+		HER17_RS04490	0.31	-0.7
1,022,062	+		HER17_RS04490	0.31	+1.4
1,022,063	-		HER17_RS04490	0.31	-0.1
1,022,063	-		HER17_RS04490	0.31	-0.2
1,022,063	-		HER17_RS04490	0.31	+2.4
1,022,063	-		HER17_RS04490	0.31	-0.3
1,022,063	-		HER17_RS04490	0.31	+1.0
1,022,063	-		HER17_RS04490	0.31	-0.5
1,022,118	+		HER17_RS04490	0.36	+1.0
1,022,118	+		HER17_RS04490	0.36	+0.7
1,022,142	+		HER17_RS04490	0.38	+0.0
1,022,204	+		HER17_RS04490	0.43	+1.6
1,022,205	+		HER17_RS04490	0.43	-2.2
1,022,205	+		HER17_RS04490	0.43	+1.3
1,022,206	-		HER17_RS04490	0.43	+1.0
1,022,206	-		HER17_RS04490	0.43	-0.1
1,022,209	-		HER17_RS04490	0.44	+2.6
1,022,227	-		HER17_RS04490	0.45	-1.1
1,022,268	-		HER17_RS04490	0.49	+0.0
1,022,268	-		HER17_RS04490	0.49	+1.1
1,022,326	-		HER17_RS04490	0.54	+0.8
1,022,364	-		HER17_RS04490	0.57	+2.0
1,022,364	-		HER17_RS04490	0.57	-2.6
1,022,376	+		HER17_RS04490	0.58	-0.2
1,022,377	-		HER17_RS04490	0.58	+1.4
1,022,377	-		HER17_RS04490	0.58	-0.3
1,022,377	-		HER17_RS04490	0.58	+0.5
1,022,386	+		HER17_RS04490	0.59	-1.3
1,022,386	+		HER17_RS04490	0.59	+0.7
1,022,387	-		HER17_RS04490	0.59	-2.0
1,022,387	-		HER17_RS04490	0.59	+0.9
1,022,439	+		HER17_RS04490	0.63	-1.1
1,022,440	-		HER17_RS04490	0.63	+1.0
1,022,465	-		HER17_RS04490	0.66	+0.6
1,022,550	-		HER17_RS04490	0.73	+0.5
1,022,550	-		HER17_RS04490	0.73	-0.4
1,022,564	+		HER17_RS04490	0.74	+1.3
1,022,565	-		HER17_RS04490	0.74	+0.8
1,022,565	-		HER17_RS04490	0.74	-1.0
1,022,594	-		HER17_RS04490	0.77	-1.7
1,022,622	+		HER17_RS04490	0.79	-0.2
1,022,622	+		HER17_RS04490	0.79	+0.2
1,022,623	-		HER17_RS04490	0.79	+2.0
1,022,662	+		HER17_RS04490	0.83	-2.0
1,022,662	+		HER17_RS04490	0.83	+1.4
1,022,662	+		HER17_RS04490	0.83	+0.3
1,022,662	+		HER17_RS04490	0.83	-1.0
1,022,663	-		HER17_RS04490	0.83	+0.4
1,022,663	-		HER17_RS04490	0.83	-0.8
1,022,668	-		HER17_RS04490	0.83	+1.0
1,022,768	-				-1.3
1,022,768	-				+0.3
1,022,772	+				-3.4
1,022,861	-				-2.7
1,022,861	-				-3.5
1,022,861	-				-1.1
1,022,865	-				-1.2
1,022,924	+				+2.2
1,022,924	+				-1.1
1,022,925	-				-0.1
1,023,039	+		HER17_RS04495	0.12	+0.1
1,023,039	+		HER17_RS04495	0.12	+0.2
1,023,039	+		HER17_RS04495	0.12	+0.0
1,023,040	-		HER17_RS04495	0.12	+1.0
1,023,040	-		HER17_RS04495	0.12	+0.0
1,023,040	-		HER17_RS04495	0.12	-1.8
1,023,040	-		HER17_RS04495	0.12	-0.4
1,023,043	+		HER17_RS04495	0.12	-0.6
1,023,043	+		HER17_RS04495	0.12	+1.0
1,023,043	+		HER17_RS04495	0.12	-2.2
1,023,044	-		HER17_RS04495	0.12	+0.7
1,023,044	-		HER17_RS04495	0.12	-2.7
1,023,044	-		HER17_RS04495	0.12	-0.3
1,023,044	-		HER17_RS04495	0.12	+0.7
1,023,044	-		HER17_RS04495	0.12	-1.2
1,023,044	-		HER17_RS04495	0.12	+1.2
1,023,044	-		HER17_RS04495	0.12	-1.1
1,023,167	+		HER17_RS04495	0.24	+1.9
1,023,247	+		HER17_RS04495	0.32	+1.1
1,023,247	+		HER17_RS04495	0.32	+0.4
1,023,247	+		HER17_RS04495	0.32	+0.1
1,023,247	+		HER17_RS04495	0.32	-0.6
1,023,248	-		HER17_RS04495	0.32	+0.6
1,023,285	-		HER17_RS04495	0.36	-0.4
1,023,299	+		HER17_RS04495	0.37	+0.1
1,023,299	+		HER17_RS04495	0.37	-0.2
1,023,300	-		HER17_RS04495	0.38	+1.2
1,023,300	-		HER17_RS04495	0.38	+0.6
1,023,302	+		HER17_RS04495	0.38	-0.6
1,023,302	+		HER17_RS04495	0.38	-0.1
1,023,302	+		HER17_RS04495	0.38	+0.8
1,023,326	+		HER17_RS04495	0.40	+1.0
1,023,359	+		HER17_RS04495	0.43	-0.7
1,023,360	-		HER17_RS04495	0.43	+0.9
1,023,372	+		HER17_RS04495	0.45	+1.6
1,023,373	-		HER17_RS04495	0.45	+1.5
1,023,373	-		HER17_RS04495	0.45	-0.1
1,023,469	-		HER17_RS04495	0.54	+1.1
1,023,526	-		HER17_RS04495	0.60	+0.4
1,023,593	+		HER17_RS04495	0.67	-0.4
1,023,593	+		HER17_RS04495	0.67	-2.4
1,023,594	-		HER17_RS04495	0.67	+0.1
1,023,594	-		HER17_RS04495	0.67	-0.9
1,023,594	-		HER17_RS04495	0.67	-2.4
1,023,594	-		HER17_RS04495	0.67	-1.7
1,023,609	-		HER17_RS04495	0.68	-1.4
1,023,675	+		HER17_RS04495	0.75	-1.0
1,023,707	+		HER17_RS04495	0.78	+0.0
1,023,707	+		HER17_RS04495	0.78	-2.4
1,023,707	+		HER17_RS04495	0.78	-0.8
1,023,707	+		HER17_RS04495	0.78	-2.0
1,023,707	+		HER17_RS04495	0.78	+0.0
1,023,708	-		HER17_RS04495	0.78	+0.5
1,023,708	-		HER17_RS04495	0.78	+0.4
1,023,708	-		HER17_RS04495	0.78	-2.3
1,023,719	+		HER17_RS04495	0.79	+0.5
1,023,719	+		HER17_RS04495	0.79	+2.5
1,023,720	-		HER17_RS04495	0.79	+0.4
1,023,720	-		HER17_RS04495	0.79	-1.3
1,023,749	+		HER17_RS04495	0.82	+0.0
1,023,750	-		HER17_RS04495	0.82	-1.9
1,023,750	-		HER17_RS04495	0.82	-0.6
1,023,754	+		HER17_RS04495	0.83	-0.1
1,023,755	-		HER17_RS04495	0.83	+0.2
1,023,755	-		HER17_RS04495	0.83	-0.1
1,023,834	+				+0.1
1,023,835	-				-1.0
1,023,840	+				+1.9