Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04235 and HER17_RS04240 overlap by 1 nucleotides HER17_RS04240 and HER17_RS04245 are separated by 12 nucleotides
HER17_RS04235: HER17_RS04235 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 967,842 to 969,671
_RS04235
HER17_RS04240: HER17_RS04240 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 969,671 to 971,404
_RS04240
HER17_RS04245: HER17_RS04245 - phosphoadenylyl-sulfate reductase, at 971,417 to 972,151
_RS04245
Position (kb) 969
970
971
972 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 968.865 kb on + strand, within HER17_RS04235 at 968.865 kb on + strand, within HER17_RS04235 at 968.866 kb on - strand, within HER17_RS04235 at 968.958 kb on - strand, within HER17_RS04235 at 969.033 kb on + strand, within HER17_RS04235 at 969.034 kb on - strand, within HER17_RS04235 at 969.039 kb on - strand, within HER17_RS04235 at 969.106 kb on - strand, within HER17_RS04235 at 969.106 kb on - strand, within HER17_RS04235 at 969.142 kb on - strand, within HER17_RS04235 at 969.201 kb on - strand, within HER17_RS04235 at 969.281 kb on + strand, within HER17_RS04235 at 969.281 kb on + strand, within HER17_RS04235 at 969.336 kb on - strand, within HER17_RS04235 at 969.347 kb on + strand, within HER17_RS04235 at 969.384 kb on + strand, within HER17_RS04235 at 969.385 kb on - strand, within HER17_RS04235 at 969.450 kb on + strand, within HER17_RS04235 at 969.451 kb on - strand, within HER17_RS04235 at 969.519 kb on + strand at 969.519 kb on + strand at 969.519 kb on + strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.542 kb on + strand at 969.580 kb on + strand at 969.580 kb on + strand at 969.580 kb on + strand at 969.652 kb on - strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.684 kb on - strand at 969.720 kb on + strand at 969.720 kb on + strand at 969.721 kb on - strand at 969.721 kb on - strand at 969.840 kb on + strand at 969.856 kb on + strand, within HER17_RS04240 at 969.856 kb on + strand, within HER17_RS04240 at 969.857 kb on - strand, within HER17_RS04240 at 969.860 kb on + strand, within HER17_RS04240 at 969.860 kb on + strand, within HER17_RS04240 at 969.861 kb on - strand, within HER17_RS04240 at 970.014 kb on - strand, within HER17_RS04240 at 970.014 kb on - strand, within HER17_RS04240 at 970.018 kb on + strand, within HER17_RS04240 at 970.053 kb on - strand, within HER17_RS04240 at 970.102 kb on + strand, within HER17_RS04240 at 970.102 kb on + strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.159 kb on + strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.200 kb on - strand, within HER17_RS04240 at 970.250 kb on + strand, within HER17_RS04240 at 970.251 kb on - strand, within HER17_RS04240 at 970.319 kb on + strand, within HER17_RS04240 at 970.319 kb on + strand, within HER17_RS04240 at 970.320 kb on - strand, within HER17_RS04240 at 970.320 kb on - strand, within HER17_RS04240 at 970.514 kb on + strand, within HER17_RS04240 at 970.514 kb on + strand, within HER17_RS04240 at 970.515 kb on - strand, within HER17_RS04240 at 970.532 kb on - strand, within HER17_RS04240 at 970.595 kb on - strand, within HER17_RS04240 at 970.750 kb on + strand, within HER17_RS04240 at 970.751 kb on - strand, within HER17_RS04240 at 970.751 kb on - strand, within HER17_RS04240 at 970.906 kb on + strand, within HER17_RS04240 at 970.906 kb on + strand, within HER17_RS04240 at 970.907 kb on - strand, within HER17_RS04240 at 970.975 kb on + strand, within HER17_RS04240 at 970.975 kb on + strand, within HER17_RS04240 at 971.104 kb on + strand, within HER17_RS04240 at 971.105 kb on - strand, within HER17_RS04240 at 971.192 kb on + strand, within HER17_RS04240 at 971.192 kb on + strand, within HER17_RS04240 at 971.194 kb on + strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.240 kb on - strand at 971.243 kb on + strand at 971.243 kb on + strand at 971.362 kb on + strand at 971.362 kb on + strand at 971.363 kb on - strand at 971.363 kb on - strand at 971.365 kb on + strand at 971.365 kb on + strand at 971.429 kb on - strand at 971.488 kb on - strand at 971.488 kb on - strand at 971.558 kb on + strand, within HER17_RS04245 at 971.630 kb on - strand, within HER17_RS04245 at 971.630 kb on - strand, within HER17_RS04245 at 971.638 kb on + strand, within HER17_RS04245 at 971.639 kb on - strand, within HER17_RS04245 at 971.639 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.707 kb on - strand, within HER17_RS04245 at 971.807 kb on + strand, within HER17_RS04245 at 971.821 kb on + strand, within HER17_RS04245 at 971.857 kb on - strand, within HER17_RS04245 at 971.917 kb on - strand, within HER17_RS04245 at 971.917 kb on - strand, within HER17_RS04245 at 971.987 kb on + strand, within HER17_RS04245 at 971.987 kb on + strand, within HER17_RS04245 at 971.988 kb on - strand, within HER17_RS04245 at 971.994 kb on - strand, within HER17_RS04245 at 971.994 kb on - strand, within HER17_RS04245 at 972.017 kb on + strand, within HER17_RS04245 at 972.017 kb on + strand, within HER17_RS04245 at 972.041 kb on + strand, within HER17_RS04245 at 972.216 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.241 kb on + strand at 972.280 kb on + strand at 972.300 kb on + strand at 972.301 kb on - strand at 972.301 kb on - strand at 972.341 kb on + strand at 972.389 kb on - strand at 972.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 968,865 + HER17_RS04235 0.56 -0.9 968,865 + HER17_RS04235 0.56 +0.9 968,866 - HER17_RS04235 0.56 +3.5 968,958 - HER17_RS04235 0.61 -1.1 969,033 + HER17_RS04235 0.65 -1.7 969,034 - HER17_RS04235 0.65 +0.3 969,039 - HER17_RS04235 0.65 +0.5 969,106 - HER17_RS04235 0.69 -0.5 969,106 - HER17_RS04235 0.69 -2.1 969,142 - HER17_RS04235 0.71 +0.8 969,201 - HER17_RS04235 0.74 -0.1 969,281 + HER17_RS04235 0.79 +0.3 969,281 + HER17_RS04235 0.79 -0.5 969,336 - HER17_RS04235 0.82 -0.2 969,347 + HER17_RS04235 0.82 -0.7 969,384 + HER17_RS04235 0.84 +0.1 969,385 - HER17_RS04235 0.84 -0.1 969,450 + HER17_RS04235 0.88 -0.4 969,451 - HER17_RS04235 0.88 -0.0 969,519 + -1.0 969,519 + +6.3 969,519 + -0.2 969,520 - -0.1 969,520 - -0.1 969,520 - -1.1 969,520 - +2.1 969,520 - +0.1 969,520 - +0.5 969,520 - +0.1 969,520 - -0.2 969,520 - -0.5 969,542 + +0.7 969,580 + -0.1 969,580 + +2.7 969,580 + +0.6 969,652 - +1.6 969,666 + -1.5 969,666 + +1.2 969,666 + -0.9 969,666 + -0.6 969,666 + -1.2 969,667 - -0.7 969,667 - -2.3 969,667 - -0.9 969,667 - -1.1 969,684 - +2.8 969,720 + -0.4 969,720 + -0.2 969,721 - -0.9 969,721 - +0.7 969,840 + +0.1 969,856 + HER17_RS04240 0.11 +1.2 969,856 + HER17_RS04240 0.11 -1.0 969,857 - HER17_RS04240 0.11 -0.9 969,860 + HER17_RS04240 0.11 -1.0 969,860 + HER17_RS04240 0.11 -1.3 969,861 - HER17_RS04240 0.11 +2.1 970,014 - HER17_RS04240 0.20 -0.7 970,014 - HER17_RS04240 0.20 -2.3 970,018 + HER17_RS04240 0.20 -0.5 970,053 - HER17_RS04240 0.22 -0.5 970,102 + HER17_RS04240 0.25 -2.1 970,102 + HER17_RS04240 0.25 +2.3 970,103 - HER17_RS04240 0.25 -0.1 970,103 - HER17_RS04240 0.25 +1.6 970,103 - HER17_RS04240 0.25 +1.3 970,159 + HER17_RS04240 0.28 -0.1 970,160 - HER17_RS04240 0.28 -0.3 970,160 - HER17_RS04240 0.28 +1.1 970,160 - HER17_RS04240 0.28 +1.1 970,199 + HER17_RS04240 0.30 -1.7 970,199 + HER17_RS04240 0.30 +0.4 970,199 + HER17_RS04240 0.30 +1.6 970,200 - HER17_RS04240 0.31 +1.1 970,250 + HER17_RS04240 0.33 +1.1 970,251 - HER17_RS04240 0.33 +0.3 970,319 + HER17_RS04240 0.37 +2.2 970,319 + HER17_RS04240 0.37 -0.7 970,320 - HER17_RS04240 0.37 -4.0 970,320 - HER17_RS04240 0.37 -1.3 970,514 + HER17_RS04240 0.49 -0.7 970,514 + HER17_RS04240 0.49 -0.3 970,515 - HER17_RS04240 0.49 -1.3 970,532 - HER17_RS04240 0.50 -0.5 970,595 - HER17_RS04240 0.53 -1.3 970,750 + HER17_RS04240 0.62 -0.9 970,751 - HER17_RS04240 0.62 -1.5 970,751 - HER17_RS04240 0.62 +2.2 970,906 + HER17_RS04240 0.71 -0.8 970,906 + HER17_RS04240 0.71 +0.7 970,907 - HER17_RS04240 0.71 -1.9 970,975 + HER17_RS04240 0.75 +0.5 970,975 + HER17_RS04240 0.75 +0.7 971,104 + HER17_RS04240 0.83 -1.5 971,105 - HER17_RS04240 0.83 +0.2 971,192 + HER17_RS04240 0.88 -0.0 971,192 + HER17_RS04240 0.88 -0.5 971,194 + HER17_RS04240 0.88 -0.1 971,195 - HER17_RS04240 0.88 +3.5 971,195 - HER17_RS04240 0.88 -0.3 971,195 - HER17_RS04240 0.88 -1.9 971,195 - HER17_RS04240 0.88 +1.6 971,239 + -0.5 971,239 + +1.1 971,239 + -0.9 971,239 + -1.1 971,239 + -0.5 971,240 - -2.0 971,243 + +0.3 971,243 + -2.1 971,362 + +1.0 971,362 + -0.7 971,363 - -2.0 971,363 - +1.8 971,365 + +1.1 971,365 + +1.3 971,429 - -0.2 971,488 - -0.9 971,488 - -0.1 971,558 + HER17_RS04245 0.19 -0.9 971,630 - HER17_RS04245 0.29 -1.3 971,630 - HER17_RS04245 0.29 -0.5 971,638 + HER17_RS04245 0.30 -0.5 971,639 - HER17_RS04245 0.30 -0.1 971,639 - HER17_RS04245 0.30 +0.4 971,684 - HER17_RS04245 0.36 +1.9 971,684 - HER17_RS04245 0.36 -1.3 971,684 - HER17_RS04245 0.36 +0.1 971,707 - HER17_RS04245 0.39 -0.2 971,807 + HER17_RS04245 0.53 -1.3 971,821 + HER17_RS04245 0.55 -0.9 971,857 - HER17_RS04245 0.60 -0.8 971,917 - HER17_RS04245 0.68 -1.1 971,917 - HER17_RS04245 0.68 +1.1 971,987 + HER17_RS04245 0.78 +1.6 971,987 + HER17_RS04245 0.78 +0.8 971,988 - HER17_RS04245 0.78 -0.9 971,994 - HER17_RS04245 0.79 -1.5 971,994 - HER17_RS04245 0.79 +2.5 972,017 + HER17_RS04245 0.82 -2.9 972,017 + HER17_RS04245 0.82 +0.8 972,041 + HER17_RS04245 0.85 -0.6 972,216 - -1.7 972,218 - +1.1 972,218 - +0.6 972,218 - +0.0 972,218 - -1.4 972,218 - +0.8 972,241 + +0.4 972,280 + -0.8 972,300 + -0.3 972,301 - +0.3 972,301 - -0.5 972,341 + +0.2 972,389 - +2.4 972,389 - -0.5
Or see this region's nucleotide sequence