Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03885 and HER17_RS03890 are separated by 181 nucleotides HER17_RS03890 and HER17_RS03895 are separated by 5 nucleotides HER17_RS03895 and HER17_RS03900 are separated by 4 nucleotides HER17_RS03900 and HER17_RS03905 are separated by 41 nucleotides HER17_RS03905 and HER17_RS03910 are separated by 129 nucleotides
HER17_RS03885: HER17_RS03885 - esterase, at 879,228 to 879,980
_RS03885
HER17_RS03890: HER17_RS03890 - 30S ribosomal protein S6, at 880,162 to 880,554
_RS03890
HER17_RS03895: HER17_RS03895 - primosomal replication protein N, at 880,560 to 880,880
_RS03895
HER17_RS03900: HER17_RS03900 - 30S ribosomal protein S18, at 880,885 to 881,112
_RS03900
HER17_RS03905: HER17_RS03905 - 50S ribosomal protein L9, at 881,154 to 881,606
_RS03905
HER17_RS03910: HER17_RS03910 - DUF488 family protein, at 881,736 to 882,098
_RS03910
Position (kb) 880
881 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 879.603 kb on - strand, within HER17_RS03885 at 879.623 kb on + strand, within HER17_RS03885 at 879.623 kb on + strand, within HER17_RS03885 at 879.624 kb on - strand, within HER17_RS03885 at 879.641 kb on + strand, within HER17_RS03885 at 879.641 kb on + strand, within HER17_RS03885 at 879.642 kb on - strand, within HER17_RS03885 at 879.753 kb on + strand, within HER17_RS03885 at 879.753 kb on + strand, within HER17_RS03885 at 879.753 kb on + strand, within HER17_RS03885 at 879.754 kb on - strand, within HER17_RS03885 at 879.866 kb on - strand, within HER17_RS03885 at 879.888 kb on - strand, within HER17_RS03885 at 879.898 kb on - strand, within HER17_RS03885 at 879.978 kb on + strand at 879.979 kb on - strand at 879.979 kb on - strand at 879.998 kb on - strand at 881.153 kb on - strand at 881.698 kb on + strand at 881.698 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.704 kb on + strand at 881.705 kb on - strand at 881.708 kb on + strand at 881.708 kb on + strand at 881.708 kb on + strand at 881.709 kb on - strand at 881.709 kb on - strand at 881.709 kb on - strand at 881.709 kb on - strand at 881.709 kb on - strand at 881.714 kb on + strand at 881.767 kb on - strand at 881.864 kb on + strand, within HER17_RS03910 at 881.865 kb on - strand, within HER17_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 879,603 - HER17_RS03885 0.50 -0.5 879,623 + HER17_RS03885 0.52 -0.5 879,623 + HER17_RS03885 0.52 +2.9 879,624 - HER17_RS03885 0.53 -0.9 879,641 + HER17_RS03885 0.55 -0.1 879,641 + HER17_RS03885 0.55 -1.2 879,642 - HER17_RS03885 0.55 +0.4 879,753 + HER17_RS03885 0.70 -0.1 879,753 + HER17_RS03885 0.70 +0.5 879,753 + HER17_RS03885 0.70 +0.5 879,754 - HER17_RS03885 0.70 +0.1 879,866 - HER17_RS03885 0.85 -1.5 879,888 - HER17_RS03885 0.88 +1.4 879,898 - HER17_RS03885 0.89 +0.1 879,978 + -0.2 879,979 - -0.9 879,979 - -0.5 879,998 - +0.5 881,153 - +0.1 881,698 + -0.3 881,698 + +0.3 881,704 + +2.2 881,704 + -0.7 881,704 + -0.6 881,704 + +1.7 881,704 + +0.1 881,705 - -0.3 881,708 + -1.2 881,708 + +1.1 881,708 + +0.1 881,709 - +1.3 881,709 - -0.4 881,709 - -0.7 881,709 - -1.8 881,709 - -1.7 881,714 + +1.5 881,767 - -0.6 881,864 + HER17_RS03910 0.35 +0.8 881,865 - HER17_RS03910 0.36 -1.9
Or see this region's nucleotide sequence