Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03190 and HER17_RS03195 are separated by 18 nucleotides HER17_RS03195 and HER17_RS03200 are separated by 26 nucleotides HER17_RS03200 and HER17_RS03205 are separated by 112 nucleotides
HER17_RS03190: HER17_RS03190 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 721,908 to 722,825
_RS03190
HER17_RS03195: HER17_RS03195 - DUF721 domain-containing protein, at 722,844 to 723,371
_RS03195
HER17_RS03200: HER17_RS03200 - secA translation cis-regulator SecM, at 723,398 to 723,913
_RS03200
HER17_RS03205: HER17_RS03205 - preprotein translocase subunit SecA, at 724,026 to 726,728
_RS03205
Position (kb) 722
723
724 Strain fitness (log2 ratio) -2
-1
0
1 at 722.798 kb on + strand at 722.841 kb on + strand at 722.842 kb on - strand at 722.852 kb on + strand at 722.853 kb on - strand at 722.853 kb on - strand at 722.856 kb on - strand at 722.868 kb on - strand at 722.904 kb on + strand, within HER17_RS03195 at 722.905 kb on - strand, within HER17_RS03195 at 722.908 kb on - strand, within HER17_RS03195 at 722.908 kb on - strand, within HER17_RS03195 at 722.999 kb on + strand, within HER17_RS03195 at 723.000 kb on - strand, within HER17_RS03195 at 723.023 kb on + strand, within HER17_RS03195 at 723.371 kb on + strand at 723.371 kb on + strand at 723.371 kb on + strand at 723.393 kb on + strand at 723.406 kb on + strand at 723.459 kb on + strand, within HER17_RS03200 at 723.567 kb on + strand, within HER17_RS03200 at 723.623 kb on + strand, within HER17_RS03200 at 723.919 kb on + strand at 723.919 kb on + strand at 723.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 722,798 + +0.3 722,841 + +0.8 722,842 - +0.4 722,852 + +1.2 722,853 - -0.1 722,853 - +0.4 722,856 - -0.8 722,868 - +0.6 722,904 + HER17_RS03195 0.11 -1.1 722,905 - HER17_RS03195 0.12 +0.1 722,908 - HER17_RS03195 0.12 +1.3 722,908 - HER17_RS03195 0.12 +0.2 722,999 + HER17_RS03195 0.29 +1.2 723,000 - HER17_RS03195 0.30 +0.3 723,023 + HER17_RS03195 0.34 -0.2 723,371 + -0.8 723,371 + -2.1 723,371 + -0.7 723,393 + +0.6 723,406 + -2.0 723,459 + HER17_RS03200 0.12 +0.2 723,567 + HER17_RS03200 0.33 +0.3 723,623 + HER17_RS03200 0.44 -0.2 723,919 + -0.0 723,919 + +1.2 723,930 + +0.3
Or see this region's nucleotide sequence