Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02750 and HER17_RS02755 are separated by 72 nucleotides HER17_RS02755 and HER17_RS02760 are separated by 3 nucleotides HER17_RS02760 and HER17_RS02765 are separated by 50 nucleotides HER17_RS02765 and HER17_RS02770 overlap by 12 nucleotides
HER17_RS02750: HER17_RS02750 - murein transglycosylase, at 618,077 to 620,011
_RS02750
HER17_RS02755: HER17_RS02755 - trp operon repressor, at 620,084 to 620,431
_RS02755
HER17_RS02760: HER17_RS02760 - inosine/xanthosine triphosphatase, at 620,435 to 620,974
_RS02760
HER17_RS02765: HER17_RS02765 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB, at 621,025 to 621,675
_RS02765
HER17_RS02770: HER17_RS02770 - MDR efflux pump AcrAB transcriptional activator RobA, at 621,664 to 622,551
_RS02770
Position (kb) 620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 619.550 kb on - strand, within HER17_RS02750 at 619.552 kb on + strand, within HER17_RS02750 at 619.553 kb on - strand, within HER17_RS02750 at 619.562 kb on + strand, within HER17_RS02750 at 619.562 kb on + strand, within HER17_RS02750 at 619.562 kb on + strand, within HER17_RS02750 at 619.562 kb on + strand, within HER17_RS02750 at 619.563 kb on - strand, within HER17_RS02750 at 619.563 kb on - strand, within HER17_RS02750 at 619.563 kb on - strand, within HER17_RS02750 at 619.563 kb on - strand, within HER17_RS02750 at 619.666 kb on + strand, within HER17_RS02750 at 619.666 kb on + strand, within HER17_RS02750 at 619.666 kb on + strand, within HER17_RS02750 at 619.684 kb on + strand, within HER17_RS02750 at 619.684 kb on + strand, within HER17_RS02750 at 619.685 kb on - strand, within HER17_RS02750 at 619.694 kb on + strand, within HER17_RS02750 at 619.695 kb on - strand, within HER17_RS02750 at 619.695 kb on - strand, within HER17_RS02750 at 619.695 kb on - strand, within HER17_RS02750 at 619.697 kb on - strand, within HER17_RS02750 at 619.751 kb on + strand, within HER17_RS02750 at 619.752 kb on - strand, within HER17_RS02750 at 619.760 kb on + strand, within HER17_RS02750 at 619.760 kb on + strand, within HER17_RS02750 at 619.761 kb on - strand, within HER17_RS02750 at 619.761 kb on - strand, within HER17_RS02750 at 619.766 kb on + strand, within HER17_RS02750 at 619.766 kb on + strand, within HER17_RS02750 at 619.808 kb on + strand, within HER17_RS02750 at 619.808 kb on + strand, within HER17_RS02750 at 619.809 kb on - strand, within HER17_RS02750 at 619.809 kb on - strand, within HER17_RS02750 at 619.809 kb on - strand, within HER17_RS02750 at 619.809 kb on - strand, within HER17_RS02750 at 619.810 kb on + strand, within HER17_RS02750 at 619.810 kb on + strand, within HER17_RS02750 at 619.810 kb on + strand, within HER17_RS02750 at 619.811 kb on - strand, within HER17_RS02750 at 619.811 kb on - strand, within HER17_RS02750 at 619.811 kb on - strand, within HER17_RS02750 at 619.811 kb on - strand, within HER17_RS02750 at 619.834 kb on + strand at 619.835 kb on - strand at 619.835 kb on - strand at 619.889 kb on - strand at 619.889 kb on - strand at 619.914 kb on - strand at 619.934 kb on + strand at 619.934 kb on + strand at 619.934 kb on + strand at 619.935 kb on - strand at 619.946 kb on + strand at 620.046 kb on + strand at 620.056 kb on + strand at 620.060 kb on - strand at 620.060 kb on - strand at 620.060 kb on - strand at 620.063 kb on + strand at 620.064 kb on - strand at 620.064 kb on - strand at 620.067 kb on + strand at 620.067 kb on + strand at 620.070 kb on + strand at 620.070 kb on + strand at 620.084 kb on - strand at 620.170 kb on + strand, within HER17_RS02755 at 620.170 kb on + strand, within HER17_RS02755 at 620.170 kb on + strand, within HER17_RS02755 at 620.171 kb on - strand, within HER17_RS02755 at 620.227 kb on + strand, within HER17_RS02755 at 620.227 kb on + strand, within HER17_RS02755 at 620.228 kb on - strand, within HER17_RS02755 at 620.228 kb on - strand, within HER17_RS02755 at 620.255 kb on - strand, within HER17_RS02755 at 620.255 kb on - strand, within HER17_RS02755 at 620.256 kb on + strand, within HER17_RS02755 at 620.256 kb on + strand, within HER17_RS02755 at 620.257 kb on - strand, within HER17_RS02755 at 620.257 kb on - strand, within HER17_RS02755 at 620.265 kb on + strand, within HER17_RS02755 at 620.266 kb on - strand, within HER17_RS02755 at 620.307 kb on + strand, within HER17_RS02755 at 620.307 kb on + strand, within HER17_RS02755 at 620.307 kb on + strand, within HER17_RS02755 at 620.307 kb on + strand, within HER17_RS02755 at 620.329 kb on + strand, within HER17_RS02755 at 620.329 kb on + strand, within HER17_RS02755 at 620.329 kb on + strand, within HER17_RS02755 at 620.330 kb on - strand, within HER17_RS02755 at 620.407 kb on + strand at 620.408 kb on - strand at 620.408 kb on - strand at 620.416 kb on - strand at 620.466 kb on + strand at 620.467 kb on - strand at 620.514 kb on + strand, within HER17_RS02760 at 620.515 kb on - strand, within HER17_RS02760 at 620.515 kb on - strand, within HER17_RS02760 at 620.515 kb on - strand, within HER17_RS02760 at 620.515 kb on - strand, within HER17_RS02760 at 620.515 kb on - strand, within HER17_RS02760 at 620.515 kb on - strand, within HER17_RS02760 at 620.515 kb on - strand, within HER17_RS02760 at 620.516 kb on + strand, within HER17_RS02760 at 620.516 kb on + strand, within HER17_RS02760 at 620.517 kb on - strand, within HER17_RS02760 at 620.517 kb on - strand, within HER17_RS02760 at 620.517 kb on - strand, within HER17_RS02760 at 620.524 kb on + strand, within HER17_RS02760 at 620.569 kb on + strand, within HER17_RS02760 at 620.569 kb on + strand, within HER17_RS02760 at 620.570 kb on - strand, within HER17_RS02760 at 620.570 kb on - strand, within HER17_RS02760 at 620.570 kb on - strand, within HER17_RS02760 at 620.576 kb on - strand, within HER17_RS02760 at 620.615 kb on + strand, within HER17_RS02760 at 620.615 kb on + strand, within HER17_RS02760 at 620.616 kb on - strand, within HER17_RS02760 at 620.636 kb on - strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.642 kb on + strand, within HER17_RS02760 at 620.643 kb on - strand, within HER17_RS02760 at 620.643 kb on - strand, within HER17_RS02760 at 620.643 kb on - strand, within HER17_RS02760 at 620.643 kb on - strand, within HER17_RS02760 at 620.643 kb on - strand, within HER17_RS02760 at 620.643 kb on - strand, within HER17_RS02760 at 620.643 kb on - strand, within HER17_RS02760 at 620.643 kb on - strand, within HER17_RS02760 at 620.643 kb on - strand, within HER17_RS02760 at 620.646 kb on - strand, within HER17_RS02760 at 620.646 kb on - strand, within HER17_RS02760 at 620.646 kb on - strand, within HER17_RS02760 at 620.647 kb on + strand, within HER17_RS02760 at 620.647 kb on + strand, within HER17_RS02760 at 620.647 kb on + strand, within HER17_RS02760 at 620.647 kb on + strand, within HER17_RS02760 at 620.647 kb on + strand, within HER17_RS02760 at 620.647 kb on + strand, within HER17_RS02760 at 620.648 kb on - strand, within HER17_RS02760 at 620.648 kb on - strand, within HER17_RS02760 at 620.648 kb on - strand, within HER17_RS02760 at 620.923 kb on + strand at 620.923 kb on + strand at 620.926 kb on + strand at 620.926 kb on + strand at 620.926 kb on + strand at 620.927 kb on - strand at 620.932 kb on + strand at 620.932 kb on + strand at 620.932 kb on + strand at 620.932 kb on + strand at 620.933 kb on - strand at 620.933 kb on - strand at 620.950 kb on + strand at 620.950 kb on + strand at 620.950 kb on + strand at 620.970 kb on + strand at 620.970 kb on + strand at 620.970 kb on + strand at 620.970 kb on + strand at 620.974 kb on + strand at 620.974 kb on + strand at 620.974 kb on + strand at 620.975 kb on - strand at 620.975 kb on - strand at 620.975 kb on - strand at 620.975 kb on - strand at 620.975 kb on - strand at 620.975 kb on - strand at 620.991 kb on + strand at 620.992 kb on - strand at 621.008 kb on + strand at 621.008 kb on + strand at 621.009 kb on - strand at 621.009 kb on - strand at 621.009 kb on - strand at 621.020 kb on + strand at 621.029 kb on + strand at 621.030 kb on - strand at 621.035 kb on + strand at 621.035 kb on + strand at 621.035 kb on + strand at 621.035 kb on + strand at 621.035 kb on + strand at 621.036 kb on - strand at 621.036 kb on - strand at 621.036 kb on - strand at 621.036 kb on - strand at 621.037 kb on + strand at 621.037 kb on + strand at 621.038 kb on - strand at 621.038 kb on - strand at 621.038 kb on - strand at 621.038 kb on - strand at 621.038 kb on - strand at 621.081 kb on + strand at 621.081 kb on + strand at 621.081 kb on + strand at 621.082 kb on - strand at 621.082 kb on - strand at 621.082 kb on - strand at 621.225 kb on + strand, within HER17_RS02765 at 621.248 kb on + strand, within HER17_RS02765 at 621.248 kb on + strand, within HER17_RS02765 at 621.248 kb on + strand, within HER17_RS02765 at 621.266 kb on + strand, within HER17_RS02765 at 621.504 kb on + strand, within HER17_RS02765 at 621.504 kb on + strand, within HER17_RS02765 at 621.630 kb on + strand at 621.630 kb on + strand at 621.630 kb on + strand at 621.631 kb on - strand at 621.665 kb on + strand at 621.665 kb on + strand at 621.687 kb on + strand at 621.688 kb on - strand at 621.688 kb on - strand at 621.707 kb on + strand at 621.708 kb on - strand at 621.708 kb on - strand at 621.821 kb on + strand, within HER17_RS02770 at 621.822 kb on - strand, within HER17_RS02770 at 621.822 kb on - strand, within HER17_RS02770 at 621.822 kb on - strand, within HER17_RS02770 at 621.832 kb on - strand, within HER17_RS02770 at 621.835 kb on - strand, within HER17_RS02770 at 621.835 kb on - strand, within HER17_RS02770 at 621.844 kb on + strand, within HER17_RS02770 at 621.844 kb on + strand, within HER17_RS02770 at 621.935 kb on + strand, within HER17_RS02770 at 621.935 kb on + strand, within HER17_RS02770 at 621.936 kb on - strand, within HER17_RS02770 at 621.936 kb on - strand, within HER17_RS02770 at 621.959 kb on + strand, within HER17_RS02770
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 619,550 - HER17_RS02750 0.76 -0.9 619,552 + HER17_RS02750 0.76 -0.5 619,553 - HER17_RS02750 0.76 -0.9 619,562 + HER17_RS02750 0.77 -0.7 619,562 + HER17_RS02750 0.77 -1.2 619,562 + HER17_RS02750 0.77 -1.5 619,562 + HER17_RS02750 0.77 -1.1 619,563 - HER17_RS02750 0.77 +0.3 619,563 - HER17_RS02750 0.77 +1.2 619,563 - HER17_RS02750 0.77 -2.5 619,563 - HER17_RS02750 0.77 +2.5 619,666 + HER17_RS02750 0.82 +0.1 619,666 + HER17_RS02750 0.82 +0.3 619,666 + HER17_RS02750 0.82 +1.1 619,684 + HER17_RS02750 0.83 -1.4 619,684 + HER17_RS02750 0.83 -0.2 619,685 - HER17_RS02750 0.83 -0.4 619,694 + HER17_RS02750 0.84 +0.1 619,695 - HER17_RS02750 0.84 -2.4 619,695 - HER17_RS02750 0.84 -3.0 619,695 - HER17_RS02750 0.84 -0.4 619,697 - HER17_RS02750 0.84 -0.0 619,751 + HER17_RS02750 0.87 +0.1 619,752 - HER17_RS02750 0.87 -0.4 619,760 + HER17_RS02750 0.87 +0.3 619,760 + HER17_RS02750 0.87 +0.8 619,761 - HER17_RS02750 0.87 -0.6 619,761 - HER17_RS02750 0.87 -0.7 619,766 + HER17_RS02750 0.87 +0.5 619,766 + HER17_RS02750 0.87 +0.0 619,808 + HER17_RS02750 0.89 -1.0 619,808 + HER17_RS02750 0.89 -0.6 619,809 - HER17_RS02750 0.90 +0.1 619,809 - HER17_RS02750 0.90 +0.3 619,809 - HER17_RS02750 0.90 -0.4 619,809 - HER17_RS02750 0.90 -1.3 619,810 + HER17_RS02750 0.90 +2.0 619,810 + HER17_RS02750 0.90 -0.6 619,810 + HER17_RS02750 0.90 -1.2 619,811 - HER17_RS02750 0.90 -0.2 619,811 - HER17_RS02750 0.90 +1.6 619,811 - HER17_RS02750 0.90 +0.3 619,811 - HER17_RS02750 0.90 -0.0 619,834 + +0.5 619,835 - -1.5 619,835 - +0.8 619,889 - +0.7 619,889 - +0.3 619,914 - +0.2 619,934 + +0.4 619,934 + -0.0 619,934 + -1.9 619,935 - -0.9 619,946 + +0.7 620,046 + +0.1 620,056 + -2.0 620,060 - +1.1 620,060 - +1.6 620,060 - -0.3 620,063 + -0.3 620,064 - -0.2 620,064 - +1.0 620,067 + +2.1 620,067 + +0.6 620,070 + -0.7 620,070 + +0.6 620,084 - -0.6 620,170 + HER17_RS02755 0.25 -0.4 620,170 + HER17_RS02755 0.25 +1.3 620,170 + HER17_RS02755 0.25 +0.4 620,171 - HER17_RS02755 0.25 +1.1 620,227 + HER17_RS02755 0.41 +0.8 620,227 + HER17_RS02755 0.41 +0.6 620,228 - HER17_RS02755 0.41 +0.1 620,228 - HER17_RS02755 0.41 -0.2 620,255 - HER17_RS02755 0.49 -0.6 620,255 - HER17_RS02755 0.49 +0.6 620,256 + HER17_RS02755 0.49 -1.2 620,256 + HER17_RS02755 0.49 -1.1 620,257 - HER17_RS02755 0.50 +2.2 620,257 - HER17_RS02755 0.50 +1.7 620,265 + HER17_RS02755 0.52 +0.7 620,266 - HER17_RS02755 0.52 +0.6 620,307 + HER17_RS02755 0.64 -0.4 620,307 + HER17_RS02755 0.64 -1.4 620,307 + HER17_RS02755 0.64 +1.4 620,307 + HER17_RS02755 0.64 +0.8 620,329 + HER17_RS02755 0.70 -0.4 620,329 + HER17_RS02755 0.70 +2.0 620,329 + HER17_RS02755 0.70 +0.4 620,330 - HER17_RS02755 0.71 -1.4 620,407 + +0.1 620,408 - +2.5 620,408 - +0.1 620,416 - +0.6 620,466 + -1.9 620,467 - -1.1 620,514 + HER17_RS02760 0.15 +0.1 620,515 - HER17_RS02760 0.15 +0.0 620,515 - HER17_RS02760 0.15 -0.6 620,515 - HER17_RS02760 0.15 -2.4 620,515 - HER17_RS02760 0.15 -1.4 620,515 - HER17_RS02760 0.15 -0.9 620,515 - HER17_RS02760 0.15 -0.7 620,515 - HER17_RS02760 0.15 -0.5 620,516 + HER17_RS02760 0.15 -0.9 620,516 + HER17_RS02760 0.15 -1.7 620,517 - HER17_RS02760 0.15 +0.1 620,517 - HER17_RS02760 0.15 -0.9 620,517 - HER17_RS02760 0.15 +0.8 620,524 + HER17_RS02760 0.16 -0.0 620,569 + HER17_RS02760 0.25 +0.1 620,569 + HER17_RS02760 0.25 -0.9 620,570 - HER17_RS02760 0.25 +0.6 620,570 - HER17_RS02760 0.25 -0.7 620,570 - HER17_RS02760 0.25 -1.0 620,576 - HER17_RS02760 0.26 -0.5 620,615 + HER17_RS02760 0.33 +0.5 620,615 + HER17_RS02760 0.33 -0.3 620,616 - HER17_RS02760 0.34 -2.0 620,636 - HER17_RS02760 0.37 -0.3 620,642 + HER17_RS02760 0.38 +1.3 620,642 + HER17_RS02760 0.38 -1.0 620,642 + HER17_RS02760 0.38 -0.4 620,642 + HER17_RS02760 0.38 -1.3 620,642 + HER17_RS02760 0.38 +0.0 620,642 + HER17_RS02760 0.38 -0.5 620,642 + HER17_RS02760 0.38 -0.9 620,642 + HER17_RS02760 0.38 +1.8 620,642 + HER17_RS02760 0.38 -0.1 620,642 + HER17_RS02760 0.38 -1.3 620,642 + HER17_RS02760 0.38 -0.4 620,643 - HER17_RS02760 0.39 -1.0 620,643 - HER17_RS02760 0.39 -0.4 620,643 - HER17_RS02760 0.39 -0.1 620,643 - HER17_RS02760 0.39 -0.5 620,643 - HER17_RS02760 0.39 +1.6 620,643 - HER17_RS02760 0.39 -0.9 620,643 - HER17_RS02760 0.39 +0.3 620,643 - HER17_RS02760 0.39 +4.6 620,643 - HER17_RS02760 0.39 +1.1 620,646 - HER17_RS02760 0.39 -0.3 620,646 - HER17_RS02760 0.39 -0.2 620,646 - HER17_RS02760 0.39 +0.8 620,647 + HER17_RS02760 0.39 +0.9 620,647 + HER17_RS02760 0.39 +2.4 620,647 + HER17_RS02760 0.39 -1.3 620,647 + HER17_RS02760 0.39 -0.7 620,647 + HER17_RS02760 0.39 +1.1 620,647 + HER17_RS02760 0.39 -0.4 620,648 - HER17_RS02760 0.39 +0.1 620,648 - HER17_RS02760 0.39 +0.3 620,648 - HER17_RS02760 0.39 -1.3 620,923 + +0.3 620,923 + -1.0 620,926 + -1.9 620,926 + -1.7 620,926 + -1.2 620,927 - +1.6 620,932 + -2.0 620,932 + -0.3 620,932 + +0.7 620,932 + +4.6 620,933 - -1.7 620,933 - +2.2 620,950 + -1.4 620,950 + +0.7 620,950 + -1.2 620,970 + -1.6 620,970 + +1.0 620,970 + +1.7 620,970 + -1.2 620,974 + -0.4 620,974 + -2.0 620,974 + -1.8 620,975 - +3.1 620,975 - -1.1 620,975 - -0.3 620,975 - -0.3 620,975 - +0.1 620,975 - -2.6 620,991 + -1.0 620,992 - +0.6 621,008 + -1.0 621,008 + -0.9 621,009 - -1.8 621,009 - -1.3 621,009 - +0.4 621,020 + -1.2 621,029 + -0.6 621,030 - -0.7 621,035 + -0.9 621,035 + +1.7 621,035 + -1.0 621,035 + +0.9 621,035 + -1.0 621,036 - -0.5 621,036 - -1.0 621,036 - +1.6 621,036 - -1.7 621,037 + -0.9 621,037 + -1.2 621,038 - -1.5 621,038 - +2.0 621,038 - +0.9 621,038 - +1.1 621,038 - +0.1 621,081 + +2.4 621,081 + -0.0 621,081 + +0.9 621,082 - +0.7 621,082 - -0.8 621,082 - -2.1 621,225 + HER17_RS02765 0.31 +0.4 621,248 + HER17_RS02765 0.34 -0.0 621,248 + HER17_RS02765 0.34 -1.7 621,248 + HER17_RS02765 0.34 +1.3 621,266 + HER17_RS02765 0.37 +0.1 621,504 + HER17_RS02765 0.74 -1.5 621,504 + HER17_RS02765 0.74 +0.9 621,630 + +0.7 621,630 + +0.1 621,630 + +1.5 621,631 - -0.5 621,665 + -2.5 621,665 + +1.2 621,687 + +0.4 621,688 - -1.3 621,688 - +2.4 621,707 + +0.3 621,708 - -0.5 621,708 - -1.5 621,821 + HER17_RS02770 0.18 -0.9 621,822 - HER17_RS02770 0.18 +0.1 621,822 - HER17_RS02770 0.18 -0.7 621,822 - HER17_RS02770 0.18 -0.6 621,832 - HER17_RS02770 0.19 +1.3 621,835 - HER17_RS02770 0.19 -1.4 621,835 - HER17_RS02770 0.19 -0.6 621,844 + HER17_RS02770 0.20 -0.5 621,844 + HER17_RS02770 0.20 -0.5 621,935 + HER17_RS02770 0.31 +0.0 621,935 + HER17_RS02770 0.31 +1.1 621,936 - HER17_RS02770 0.31 +0.1 621,936 - HER17_RS02770 0.31 +3.3 621,959 + HER17_RS02770 0.33 +0.6
Or see this region's nucleotide sequence