Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02330 and HER17_RS02335 are separated by 352 nucleotides HER17_RS02335 and HER17_RS02340 are separated by 509 nucleotides
HER17_RS02330: HER17_RS02330 - Na/Pi cotransporter family protein, at 522,582 to 524,228
_RS02330
HER17_RS02335: HER17_RS02335 - lysine-sensitive aspartokinase 3, at 524,581 to 525,957
_RS02335
HER17_RS02340: HER17_RS02340 - glucose-6-phosphate isomerase, at 526,467 to 528,116
_RS02340
Position (kb) 524
525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 523.652 kb on - strand, within HER17_RS02330 at 523.665 kb on - strand, within HER17_RS02330 at 523.713 kb on + strand, within HER17_RS02330 at 523.713 kb on + strand, within HER17_RS02330 at 523.714 kb on - strand, within HER17_RS02330 at 523.724 kb on + strand, within HER17_RS02330 at 523.724 kb on + strand, within HER17_RS02330 at 523.832 kb on + strand, within HER17_RS02330 at 523.832 kb on + strand, within HER17_RS02330 at 523.833 kb on - strand, within HER17_RS02330 at 523.833 kb on - strand, within HER17_RS02330 at 523.834 kb on + strand, within HER17_RS02330 at 523.834 kb on + strand, within HER17_RS02330 at 523.834 kb on + strand, within HER17_RS02330 at 523.834 kb on + strand, within HER17_RS02330 at 523.834 kb on + strand, within HER17_RS02330 at 523.835 kb on - strand, within HER17_RS02330 at 523.835 kb on - strand, within HER17_RS02330 at 523.835 kb on - strand, within HER17_RS02330 at 523.835 kb on - strand, within HER17_RS02330 at 523.835 kb on - strand, within HER17_RS02330 at 523.835 kb on - strand, within HER17_RS02330 at 523.876 kb on + strand, within HER17_RS02330 at 523.876 kb on + strand, within HER17_RS02330 at 523.877 kb on - strand, within HER17_RS02330 at 523.877 kb on - strand, within HER17_RS02330 at 523.877 kb on - strand, within HER17_RS02330 at 523.877 kb on - strand, within HER17_RS02330 at 523.877 kb on - strand, within HER17_RS02330 at 523.877 kb on - strand, within HER17_RS02330 at 523.877 kb on - strand, within HER17_RS02330 at 523.880 kb on + strand, within HER17_RS02330 at 523.880 kb on + strand, within HER17_RS02330 at 523.880 kb on + strand, within HER17_RS02330 at 523.880 kb on + strand, within HER17_RS02330 at 523.881 kb on - strand, within HER17_RS02330 at 523.881 kb on - strand, within HER17_RS02330 at 523.881 kb on - strand, within HER17_RS02330 at 523.881 kb on - strand, within HER17_RS02330 at 523.881 kb on - strand, within HER17_RS02330 at 523.881 kb on - strand, within HER17_RS02330 at 523.881 kb on - strand, within HER17_RS02330 at 523.881 kb on - strand, within HER17_RS02330 at 523.881 kb on - strand, within HER17_RS02330 at 524.065 kb on + strand at 524.065 kb on + strand at 524.065 kb on + strand at 524.065 kb on + strand at 524.065 kb on + strand at 524.065 kb on + strand at 524.066 kb on - strand at 524.066 kb on - strand at 524.066 kb on - strand at 524.080 kb on + strand at 524.081 kb on - strand at 524.081 kb on - strand at 524.081 kb on - strand at 524.081 kb on - strand at 524.081 kb on - strand at 524.163 kb on + strand at 524.163 kb on + strand at 524.163 kb on + strand at 524.257 kb on + strand at 524.258 kb on - strand at 524.299 kb on + strand at 524.300 kb on - strand at 524.300 kb on - strand at 524.300 kb on - strand at 524.300 kb on - strand at 524.300 kb on - strand at 524.300 kb on - strand at 524.414 kb on - strand at 524.545 kb on + strand at 524.545 kb on + strand at 524.545 kb on + strand at 524.545 kb on + strand at 524.546 kb on - strand at 524.556 kb on - strand at 524.563 kb on + strand at 524.563 kb on + strand at 524.564 kb on - strand at 524.688 kb on + strand at 524.688 kb on + strand at 524.689 kb on - strand at 524.713 kb on + strand at 524.714 kb on - strand at 524.714 kb on - strand at 524.809 kb on + strand, within HER17_RS02335 at 524.809 kb on + strand, within HER17_RS02335 at 524.810 kb on - strand, within HER17_RS02335 at 524.810 kb on - strand, within HER17_RS02335 at 524.990 kb on + strand, within HER17_RS02335 at 524.990 kb on + strand, within HER17_RS02335 at 524.990 kb on + strand, within HER17_RS02335 at 524.990 kb on + strand, within HER17_RS02335 at 524.990 kb on + strand, within HER17_RS02335 at 524.990 kb on + strand, within HER17_RS02335 at 524.991 kb on - strand, within HER17_RS02335 at 524.991 kb on - strand, within HER17_RS02335 at 524.991 kb on - strand, within HER17_RS02335 at 524.997 kb on + strand, within HER17_RS02335 at 524.998 kb on - strand, within HER17_RS02335 at 524.998 kb on - strand, within HER17_RS02335 at 524.998 kb on - strand, within HER17_RS02335 at 524.998 kb on - strand, within HER17_RS02335 at 525.057 kb on + strand, within HER17_RS02335 at 525.201 kb on + strand, within HER17_RS02335 at 525.202 kb on - strand, within HER17_RS02335 at 525.202 kb on - strand, within HER17_RS02335 at 525.251 kb on + strand, within HER17_RS02335 at 525.251 kb on + strand, within HER17_RS02335 at 525.251 kb on + strand, within HER17_RS02335 at 525.251 kb on + strand, within HER17_RS02335 at 525.251 kb on + strand, within HER17_RS02335 at 525.251 kb on + strand, within HER17_RS02335 at 525.251 kb on + strand, within HER17_RS02335 at 525.251 kb on + strand, within HER17_RS02335 at 525.251 kb on + strand, within HER17_RS02335 at 525.251 kb on + strand, within HER17_RS02335 at 525.252 kb on - strand, within HER17_RS02335 at 525.252 kb on - strand, within HER17_RS02335 at 525.252 kb on - strand, within HER17_RS02335 at 525.252 kb on - strand, within HER17_RS02335 at 525.252 kb on - strand, within HER17_RS02335 at 525.252 kb on - strand, within HER17_RS02335 at 525.252 kb on - strand, within HER17_RS02335 at 525.252 kb on - strand, within HER17_RS02335 at 525.276 kb on + strand, within HER17_RS02335 at 525.321 kb on + strand, within HER17_RS02335 at 525.321 kb on + strand, within HER17_RS02335 at 525.322 kb on - strand, within HER17_RS02335 at 525.322 kb on - strand, within HER17_RS02335 at 525.323 kb on + strand, within HER17_RS02335 at 525.323 kb on + strand, within HER17_RS02335 at 525.564 kb on + strand, within HER17_RS02335 at 525.716 kb on + strand, within HER17_RS02335 at 525.941 kb on - strand at 525.996 kb on + strand at 526.011 kb on + strand at 526.011 kb on + strand at 526.067 kb on + strand at 526.067 kb on + strand at 526.072 kb on + strand at 526.072 kb on + strand at 526.073 kb on - strand at 526.073 kb on - strand at 526.073 kb on - strand at 526.114 kb on + strand at 526.169 kb on + strand at 526.237 kb on + strand at 526.237 kb on + strand at 526.237 kb on + strand at 526.237 kb on + strand at 526.237 kb on + strand at 526.238 kb on - strand at 526.238 kb on - strand at 526.238 kb on - strand at 526.283 kb on + strand at 526.291 kb on + strand at 526.297 kb on + strand at 526.306 kb on - strand at 526.306 kb on - strand at 526.381 kb on - strand at 526.417 kb on + strand at 526.417 kb on + strand at 526.418 kb on - strand at 526.510 kb on + strand at 526.511 kb on - strand at 526.511 kb on - strand at 526.511 kb on - strand at 526.511 kb on - strand at 526.569 kb on - strand at 526.890 kb on + strand, within HER17_RS02340 at 526.890 kb on + strand, within HER17_RS02340 at 526.908 kb on - strand, within HER17_RS02340 at 526.908 kb on - strand, within HER17_RS02340 at 526.908 kb on - strand, within HER17_RS02340
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 523,652 - HER17_RS02330 0.65 -0.2 523,665 - HER17_RS02330 0.66 +0.5 523,713 + HER17_RS02330 0.69 -0.5 523,713 + HER17_RS02330 0.69 -0.3 523,714 - HER17_RS02330 0.69 -2.1 523,724 + HER17_RS02330 0.69 +1.9 523,724 + HER17_RS02330 0.69 -0.3 523,832 + HER17_RS02330 0.76 +2.5 523,832 + HER17_RS02330 0.76 +0.3 523,833 - HER17_RS02330 0.76 -1.2 523,833 - HER17_RS02330 0.76 -0.7 523,834 + HER17_RS02330 0.76 +0.5 523,834 + HER17_RS02330 0.76 -1.2 523,834 + HER17_RS02330 0.76 +1.0 523,834 + HER17_RS02330 0.76 +0.4 523,834 + HER17_RS02330 0.76 +4.3 523,835 - HER17_RS02330 0.76 -0.8 523,835 - HER17_RS02330 0.76 +0.2 523,835 - HER17_RS02330 0.76 -0.3 523,835 - HER17_RS02330 0.76 -1.5 523,835 - HER17_RS02330 0.76 -1.1 523,835 - HER17_RS02330 0.76 +0.0 523,876 + HER17_RS02330 0.79 +0.1 523,876 + HER17_RS02330 0.79 -0.1 523,877 - HER17_RS02330 0.79 -1.1 523,877 - HER17_RS02330 0.79 -0.9 523,877 - HER17_RS02330 0.79 +0.6 523,877 - HER17_RS02330 0.79 +1.1 523,877 - HER17_RS02330 0.79 -0.9 523,877 - HER17_RS02330 0.79 -0.7 523,877 - HER17_RS02330 0.79 +0.1 523,880 + HER17_RS02330 0.79 -0.8 523,880 + HER17_RS02330 0.79 +0.1 523,880 + HER17_RS02330 0.79 -1.0 523,880 + HER17_RS02330 0.79 -1.2 523,881 - HER17_RS02330 0.79 -1.5 523,881 - HER17_RS02330 0.79 -1.2 523,881 - HER17_RS02330 0.79 -0.5 523,881 - HER17_RS02330 0.79 -0.1 523,881 - HER17_RS02330 0.79 +2.1 523,881 - HER17_RS02330 0.79 +0.7 523,881 - HER17_RS02330 0.79 -1.5 523,881 - HER17_RS02330 0.79 +0.1 523,881 - HER17_RS02330 0.79 -1.1 524,065 + -0.2 524,065 + -0.3 524,065 + -0.1 524,065 + +4.1 524,065 + +0.4 524,065 + -0.6 524,066 - -0.0 524,066 - +0.1 524,066 - +0.1 524,080 + +1.8 524,081 - -0.1 524,081 - +1.0 524,081 - -0.5 524,081 - +1.4 524,081 - -0.9 524,163 + -0.5 524,163 + +0.7 524,163 + +0.1 524,257 + -1.6 524,258 - +1.0 524,299 + +3.6 524,300 - -0.1 524,300 - -1.0 524,300 - +0.8 524,300 - -0.2 524,300 - +0.4 524,300 - -0.7 524,414 - +0.6 524,545 + +0.2 524,545 + +0.0 524,545 + -0.1 524,545 + +1.9 524,546 - +0.1 524,556 - +0.1 524,563 + -1.1 524,563 + -0.2 524,564 - -0.6 524,688 + -1.5 524,688 + +0.3 524,689 - +2.0 524,713 + -0.9 524,714 - +1.5 524,714 - +0.2 524,809 + HER17_RS02335 0.17 +0.0 524,809 + HER17_RS02335 0.17 -1.8 524,810 - HER17_RS02335 0.17 +2.0 524,810 - HER17_RS02335 0.17 -2.0 524,990 + HER17_RS02335 0.30 -1.7 524,990 + HER17_RS02335 0.30 +2.4 524,990 + HER17_RS02335 0.30 +0.4 524,990 + HER17_RS02335 0.30 -0.1 524,990 + HER17_RS02335 0.30 -0.8 524,990 + HER17_RS02335 0.30 +0.7 524,991 - HER17_RS02335 0.30 -0.0 524,991 - HER17_RS02335 0.30 -0.4 524,991 - HER17_RS02335 0.30 -0.3 524,997 + HER17_RS02335 0.30 -0.3 524,998 - HER17_RS02335 0.30 -1.2 524,998 - HER17_RS02335 0.30 -0.5 524,998 - HER17_RS02335 0.30 +2.3 524,998 - HER17_RS02335 0.30 +0.5 525,057 + HER17_RS02335 0.35 -0.4 525,201 + HER17_RS02335 0.45 +1.5 525,202 - HER17_RS02335 0.45 -2.6 525,202 - HER17_RS02335 0.45 +1.2 525,251 + HER17_RS02335 0.49 +1.1 525,251 + HER17_RS02335 0.49 -0.5 525,251 + HER17_RS02335 0.49 +0.5 525,251 + HER17_RS02335 0.49 -0.2 525,251 + HER17_RS02335 0.49 -0.8 525,251 + HER17_RS02335 0.49 -0.2 525,251 + HER17_RS02335 0.49 +0.8 525,251 + HER17_RS02335 0.49 +0.8 525,251 + HER17_RS02335 0.49 -1.5 525,251 + HER17_RS02335 0.49 -1.2 525,252 - HER17_RS02335 0.49 +0.5 525,252 - HER17_RS02335 0.49 -1.2 525,252 - HER17_RS02335 0.49 -1.9 525,252 - HER17_RS02335 0.49 +0.1 525,252 - HER17_RS02335 0.49 -1.5 525,252 - HER17_RS02335 0.49 -1.1 525,252 - HER17_RS02335 0.49 +2.0 525,252 - HER17_RS02335 0.49 -1.8 525,276 + HER17_RS02335 0.50 -2.9 525,321 + HER17_RS02335 0.54 -1.1 525,321 + HER17_RS02335 0.54 -0.2 525,322 - HER17_RS02335 0.54 -1.5 525,322 - HER17_RS02335 0.54 -3.5 525,323 + HER17_RS02335 0.54 -1.3 525,323 + HER17_RS02335 0.54 +1.5 525,564 + HER17_RS02335 0.71 +0.0 525,716 + HER17_RS02335 0.82 +1.9 525,941 - -0.9 525,996 + -0.5 526,011 + -1.7 526,011 + -0.7 526,067 + +0.6 526,067 + +1.1 526,072 + +1.1 526,072 + +0.5 526,073 - +0.6 526,073 - +1.1 526,073 - +1.1 526,114 + -0.0 526,169 + +1.1 526,237 + +0.3 526,237 + -0.7 526,237 + -0.5 526,237 + -0.6 526,237 + +0.5 526,238 - +1.7 526,238 - -2.2 526,238 - +2.5 526,283 + +1.1 526,291 + -1.2 526,297 + +0.3 526,306 - +1.1 526,306 - -2.2 526,381 - -2.5 526,417 + -0.8 526,417 + +1.0 526,418 - +2.1 526,510 + -0.5 526,511 - -1.9 526,511 - +0.7 526,511 - +0.7 526,511 - -1.1 526,569 - -2.3 526,890 + HER17_RS02340 0.26 -2.1 526,890 + HER17_RS02340 0.26 -1.3 526,908 - HER17_RS02340 0.27 -0.1 526,908 - HER17_RS02340 0.27 -0.9 526,908 - HER17_RS02340 0.27 -0.5
Or see this region's nucleotide sequence