Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01895 and HER17_RS01900 are separated by 668 nucleotides HER17_RS01900 and HER17_RS01905 are separated by 681 nucleotides
HER17_RS01895: HER17_RS01895 - polysaccharide lyase, at 444,411 to 445,535
_RS01895
HER17_RS01900: HER17_RS01900 - polysaccharide lyase, at 446,204 to 447,328
_RS01900
HER17_RS01905: HER17_RS01905 - aminodeoxychorismate synthase component II, at 448,010 to 448,585
_RS01905
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 445.228 kb on - strand, within HER17_RS01895 at 445.262 kb on + strand, within HER17_RS01895 at 445.262 kb on + strand, within HER17_RS01895 at 445.306 kb on + strand, within HER17_RS01895 at 445.306 kb on + strand, within HER17_RS01895 at 445.307 kb on - strand, within HER17_RS01895 at 445.380 kb on - strand, within HER17_RS01895 at 445.397 kb on + strand, within HER17_RS01895 at 445.397 kb on + strand, within HER17_RS01895 at 445.397 kb on + strand, within HER17_RS01895 at 445.397 kb on + strand, within HER17_RS01895 at 445.498 kb on - strand at 445.498 kb on - strand at 445.524 kb on + strand at 445.525 kb on - strand at 445.525 kb on - strand at 445.528 kb on + strand at 445.911 kb on - strand at 445.911 kb on - strand at 445.913 kb on - strand at 445.970 kb on + strand at 446.002 kb on + strand at 446.003 kb on - strand at 446.017 kb on + strand at 446.018 kb on - strand at 446.066 kb on + strand at 446.078 kb on - strand at 446.178 kb on + strand at 446.205 kb on + strand at 446.206 kb on - strand at 446.228 kb on + strand at 446.242 kb on + strand at 446.243 kb on - strand at 446.246 kb on + strand at 446.247 kb on - strand at 446.256 kb on + strand at 446.270 kb on - strand at 446.270 kb on - strand at 446.270 kb on - strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.302 kb on - strand at 446.302 kb on - strand at 446.302 kb on - strand at 446.302 kb on - strand at 446.302 kb on - strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.306 kb on - strand at 446.306 kb on - strand at 446.306 kb on - strand at 446.306 kb on - strand at 446.306 kb on - strand at 446.307 kb on + strand at 446.326 kb on + strand, within HER17_RS01900 at 446.375 kb on - strand, within HER17_RS01900 at 446.387 kb on - strand, within HER17_RS01900 at 446.387 kb on - strand, within HER17_RS01900 at 446.392 kb on - strand, within HER17_RS01900 at 446.392 kb on - strand, within HER17_RS01900 at 446.392 kb on - strand, within HER17_RS01900 at 446.417 kb on - strand, within HER17_RS01900 at 446.464 kb on + strand, within HER17_RS01900 at 446.464 kb on + strand, within HER17_RS01900 at 446.539 kb on + strand, within HER17_RS01900 at 446.566 kb on - strand, within HER17_RS01900 at 446.566 kb on - strand, within HER17_RS01900 at 446.566 kb on - strand, within HER17_RS01900 at 446.566 kb on - strand, within HER17_RS01900 at 446.576 kb on - strand, within HER17_RS01900 at 446.577 kb on + strand, within HER17_RS01900 at 446.577 kb on + strand, within HER17_RS01900 at 446.577 kb on + strand, within HER17_RS01900 at 446.577 kb on + strand, within HER17_RS01900 at 446.577 kb on + strand, within HER17_RS01900 at 446.578 kb on - strand, within HER17_RS01900 at 446.578 kb on - strand, within HER17_RS01900 at 446.578 kb on - strand, within HER17_RS01900 at 446.578 kb on - strand, within HER17_RS01900 at 446.578 kb on - strand, within HER17_RS01900 at 446.620 kb on + strand, within HER17_RS01900 at 446.620 kb on + strand, within HER17_RS01900 at 446.636 kb on - strand, within HER17_RS01900 at 446.636 kb on - strand, within HER17_RS01900 at 446.636 kb on - strand, within HER17_RS01900 at 446.646 kb on + strand, within HER17_RS01900 at 446.646 kb on + strand, within HER17_RS01900 at 446.647 kb on - strand, within HER17_RS01900 at 446.657 kb on - strand, within HER17_RS01900 at 446.693 kb on + strand, within HER17_RS01900 at 446.713 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.721 kb on + strand, within HER17_RS01900 at 446.721 kb on + strand, within HER17_RS01900 at 446.721 kb on + strand, within HER17_RS01900 at 446.721 kb on + strand, within HER17_RS01900 at 446.722 kb on - strand, within HER17_RS01900 at 446.722 kb on - strand, within HER17_RS01900 at 446.756 kb on - strand, within HER17_RS01900 at 446.899 kb on + strand, within HER17_RS01900 at 446.900 kb on - strand, within HER17_RS01900 at 446.901 kb on + strand, within HER17_RS01900 at 446.902 kb on - strand, within HER17_RS01900 at 446.918 kb on - strand, within HER17_RS01900 at 446.943 kb on - strand, within HER17_RS01900 at 446.943 kb on - strand, within HER17_RS01900 at 446.962 kb on + strand, within HER17_RS01900 at 447.021 kb on - strand, within HER17_RS01900 at 447.058 kb on + strand, within HER17_RS01900 at 447.058 kb on + strand, within HER17_RS01900 at 447.059 kb on - strand, within HER17_RS01900 at 447.059 kb on - strand, within HER17_RS01900 at 447.059 kb on - strand, within HER17_RS01900 at 447.059 kb on - strand, within HER17_RS01900 at 447.059 kb on - strand, within HER17_RS01900 at 447.099 kb on + strand, within HER17_RS01900 at 447.099 kb on + strand, within HER17_RS01900 at 447.099 kb on + strand, within HER17_RS01900 at 447.099 kb on + strand, within HER17_RS01900 at 447.100 kb on - strand, within HER17_RS01900 at 447.103 kb on + strand, within HER17_RS01900 at 447.104 kb on - strand, within HER17_RS01900 at 447.104 kb on - strand, within HER17_RS01900 at 447.104 kb on - strand, within HER17_RS01900 at 447.257 kb on - strand at 447.322 kb on - strand at 447.322 kb on - strand at 447.322 kb on - strand at 447.329 kb on + strand at 447.366 kb on + strand at 447.367 kb on - strand at 447.372 kb on + strand at 447.444 kb on - strand at 447.469 kb on + strand at 447.488 kb on + strand at 447.827 kb on + strand at 447.886 kb on - strand at 447.897 kb on - strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.977 kb on - strand at 447.977 kb on - strand at 447.977 kb on - strand at 447.977 kb on - strand at 448.009 kb on + strand at 448.009 kb on + strand at 448.009 kb on + strand at 448.010 kb on - strand at 448.010 kb on - strand at 448.010 kb on - strand at 448.017 kb on + strand at 448.017 kb on + strand at 448.018 kb on - strand at 448.018 kb on - strand at 448.027 kb on + strand at 448.031 kb on + strand at 448.031 kb on + strand at 448.031 kb on + strand at 448.032 kb on - strand at 448.042 kb on + strand at 448.046 kb on + strand at 448.046 kb on + strand at 448.056 kb on - strand at 448.171 kb on + strand, within HER17_RS01905 at 448.171 kb on + strand, within HER17_RS01905 at 448.222 kb on + strand, within HER17_RS01905 at 448.231 kb on + strand, within HER17_RS01905 at 448.232 kb on - strand, within HER17_RS01905
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 445,228 - HER17_RS01895 0.73 +0.4 445,262 + HER17_RS01895 0.76 -0.1 445,262 + HER17_RS01895 0.76 +3.0 445,306 + HER17_RS01895 0.80 -2.2 445,306 + HER17_RS01895 0.80 +0.6 445,307 - HER17_RS01895 0.80 -0.5 445,380 - HER17_RS01895 0.86 -2.1 445,397 + HER17_RS01895 0.88 +1.0 445,397 + HER17_RS01895 0.88 -1.2 445,397 + HER17_RS01895 0.88 +1.7 445,397 + HER17_RS01895 0.88 +1.4 445,498 - +1.3 445,498 - +0.6 445,524 + -0.9 445,525 - -0.2 445,525 - -0.3 445,528 + +1.0 445,911 - +0.6 445,911 - +0.3 445,913 - -0.8 445,970 + +0.1 446,002 + -1.0 446,003 - -0.2 446,017 + -0.1 446,018 - +0.1 446,066 + -1.4 446,078 - -1.6 446,178 + -1.5 446,205 + -1.5 446,206 - -0.2 446,228 + +0.1 446,242 + -0.5 446,243 - -1.1 446,246 + -0.5 446,247 - -1.6 446,256 + +0.4 446,270 - -0.9 446,270 - -1.5 446,270 - +0.0 446,301 + -1.9 446,301 + -1.0 446,301 + +0.9 446,301 + +1.7 446,301 + +0.2 446,301 + -2.1 446,301 + -0.0 446,302 - +0.1 446,302 - -1.0 446,302 - -1.6 446,302 - -0.2 446,302 - +0.1 446,305 + +1.1 446,305 + +0.4 446,305 + +0.6 446,305 + -0.0 446,305 + +0.8 446,305 + +1.0 446,305 + +0.7 446,305 + -0.0 446,305 + +2.5 446,306 - -0.3 446,306 - +0.5 446,306 - -1.0 446,306 - +1.6 446,306 - -0.7 446,307 + -0.7 446,326 + HER17_RS01900 0.11 +1.7 446,375 - HER17_RS01900 0.15 -0.3 446,387 - HER17_RS01900 0.16 +1.3 446,387 - HER17_RS01900 0.16 +0.1 446,392 - HER17_RS01900 0.17 -0.5 446,392 - HER17_RS01900 0.17 -0.5 446,392 - HER17_RS01900 0.17 +2.9 446,417 - HER17_RS01900 0.19 -1.6 446,464 + HER17_RS01900 0.23 -1.2 446,464 + HER17_RS01900 0.23 -2.1 446,539 + HER17_RS01900 0.30 -0.4 446,566 - HER17_RS01900 0.32 -0.9 446,566 - HER17_RS01900 0.32 +0.5 446,566 - HER17_RS01900 0.32 -0.3 446,566 - HER17_RS01900 0.32 +0.9 446,576 - HER17_RS01900 0.33 +1.0 446,577 + HER17_RS01900 0.33 -0.2 446,577 + HER17_RS01900 0.33 -0.9 446,577 + HER17_RS01900 0.33 -1.9 446,577 + HER17_RS01900 0.33 -1.4 446,577 + HER17_RS01900 0.33 -0.1 446,578 - HER17_RS01900 0.33 -0.1 446,578 - HER17_RS01900 0.33 -1.2 446,578 - HER17_RS01900 0.33 +1.8 446,578 - HER17_RS01900 0.33 -0.7 446,578 - HER17_RS01900 0.33 -0.1 446,620 + HER17_RS01900 0.37 +2.1 446,620 + HER17_RS01900 0.37 -0.2 446,636 - HER17_RS01900 0.38 -0.9 446,636 - HER17_RS01900 0.38 -0.0 446,636 - HER17_RS01900 0.38 -0.1 446,646 + HER17_RS01900 0.39 -0.5 446,646 + HER17_RS01900 0.39 -0.2 446,647 - HER17_RS01900 0.39 +0.7 446,657 - HER17_RS01900 0.40 +0.2 446,693 + HER17_RS01900 0.43 +0.1 446,713 + HER17_RS01900 0.45 -1.5 446,715 + HER17_RS01900 0.45 +0.6 446,715 + HER17_RS01900 0.45 -1.2 446,715 + HER17_RS01900 0.45 -0.1 446,715 + HER17_RS01900 0.45 -2.5 446,715 + HER17_RS01900 0.45 +1.0 446,715 + HER17_RS01900 0.45 +0.7 446,715 + HER17_RS01900 0.45 -2.2 446,715 + HER17_RS01900 0.45 +0.1 446,715 + HER17_RS01900 0.45 -1.5 446,715 + HER17_RS01900 0.45 +0.1 446,715 + HER17_RS01900 0.45 +0.5 446,716 - HER17_RS01900 0.46 +0.1 446,716 - HER17_RS01900 0.46 -0.6 446,716 - HER17_RS01900 0.46 -0.3 446,716 - HER17_RS01900 0.46 +0.1 446,716 - HER17_RS01900 0.46 +0.7 446,716 - HER17_RS01900 0.46 -1.3 446,716 - HER17_RS01900 0.46 -1.7 446,721 + HER17_RS01900 0.46 -0.1 446,721 + HER17_RS01900 0.46 -0.4 446,721 + HER17_RS01900 0.46 -1.7 446,721 + HER17_RS01900 0.46 -1.1 446,722 - HER17_RS01900 0.46 -0.5 446,722 - HER17_RS01900 0.46 +0.4 446,756 - HER17_RS01900 0.49 -0.7 446,899 + HER17_RS01900 0.62 -2.7 446,900 - HER17_RS01900 0.62 -0.5 446,901 + HER17_RS01900 0.62 +0.7 446,902 - HER17_RS01900 0.62 +1.2 446,918 - HER17_RS01900 0.63 -1.5 446,943 - HER17_RS01900 0.66 -0.2 446,943 - HER17_RS01900 0.66 +0.6 446,962 + HER17_RS01900 0.67 +0.5 447,021 - HER17_RS01900 0.73 +0.7 447,058 + HER17_RS01900 0.76 +0.6 447,058 + HER17_RS01900 0.76 -0.8 447,059 - HER17_RS01900 0.76 +0.0 447,059 - HER17_RS01900 0.76 +0.9 447,059 - HER17_RS01900 0.76 +1.4 447,059 - HER17_RS01900 0.76 -1.9 447,059 - HER17_RS01900 0.76 -1.1 447,099 + HER17_RS01900 0.80 -2.3 447,099 + HER17_RS01900 0.80 -2.2 447,099 + HER17_RS01900 0.80 -1.5 447,099 + HER17_RS01900 0.80 +0.3 447,100 - HER17_RS01900 0.80 -0.3 447,103 + HER17_RS01900 0.80 -0.9 447,104 - HER17_RS01900 0.80 +1.5 447,104 - HER17_RS01900 0.80 -0.5 447,104 - HER17_RS01900 0.80 +0.3 447,257 - +0.7 447,322 - +1.2 447,322 - +0.3 447,322 - +0.5 447,329 + +0.4 447,366 + -1.2 447,367 - -0.2 447,372 + +0.2 447,444 - +0.9 447,469 + -1.6 447,488 + -0.2 447,827 + -2.1 447,886 - -0.2 447,897 - -1.3 447,971 + -0.3 447,971 + -1.9 447,971 + +0.5 447,971 + +1.7 447,971 + -0.1 447,971 + -0.4 447,971 + -2.2 447,971 + +0.1 447,972 - +0.1 447,972 - -0.7 447,972 - -0.1 447,972 - +0.3 447,972 - -0.5 447,972 - -0.9 447,972 - -2.2 447,972 - -1.5 447,976 + +3.3 447,976 + -1.7 447,976 + +0.1 447,976 + +2.8 447,977 - +0.6 447,977 - -0.9 447,977 - +1.1 447,977 - +0.3 448,009 + -0.3 448,009 + -1.2 448,009 + -0.5 448,010 - +0.0 448,010 - -3.7 448,010 - +0.2 448,017 + -3.4 448,017 + -0.7 448,018 - +1.1 448,018 - +2.6 448,027 + -0.3 448,031 + +0.3 448,031 + -0.3 448,031 + -2.1 448,032 - -1.2 448,042 + -0.8 448,046 + -2.5 448,046 + +0.1 448,056 - +2.0 448,171 + HER17_RS01905 0.28 +0.7 448,171 + HER17_RS01905 0.28 +1.0 448,222 + HER17_RS01905 0.37 -0.7 448,231 + HER17_RS01905 0.38 -0.5 448,232 - HER17_RS01905 0.39 -0.1
Or see this region's nucleotide sequence