Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01770 and HER17_RS01775 are separated by 351 nucleotides HER17_RS01775 and HER17_RS01780 are separated by 51 nucleotides
HER17_RS01770: HER17_RS01770 - DNA uptake porin HofQ, at 415,519 to 416,793
_RS01770
HER17_RS01775: HER17_RS01775 - shikimate kinase AroK, at 417,145 to 417,666
_RS01775
HER17_RS01780: HER17_RS01780 - 3-dehydroquinate synthase, at 417,718 to 418,803
_RS01780
Position (kb) 417
418 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 416.291 kb on + strand, within HER17_RS01770 at 416.371 kb on - strand, within HER17_RS01770 at 416.453 kb on + strand, within HER17_RS01770 at 416.467 kb on - strand, within HER17_RS01770 at 416.497 kb on - strand, within HER17_RS01770 at 416.622 kb on + strand, within HER17_RS01770 at 416.630 kb on + strand, within HER17_RS01770 at 416.675 kb on + strand at 416.675 kb on + strand at 416.675 kb on + strand at 416.676 kb on - strand at 416.700 kb on - strand at 416.736 kb on + strand at 416.736 kb on + strand at 416.796 kb on - strand at 416.820 kb on + strand at 416.820 kb on + strand at 416.820 kb on + strand at 416.820 kb on + strand at 416.821 kb on - strand at 416.821 kb on - strand at 416.850 kb on + strand at 416.872 kb on - strand at 416.897 kb on - strand at 416.897 kb on - strand at 416.901 kb on + strand at 416.901 kb on + strand at 416.901 kb on + strand at 416.901 kb on + strand at 416.902 kb on - strand at 416.960 kb on + strand at 416.960 kb on + strand at 416.960 kb on + strand at 416.960 kb on + strand at 416.961 kb on - strand at 416.961 kb on - strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.964 kb on - strand at 416.964 kb on - strand at 417.011 kb on + strand at 417.011 kb on + strand at 417.074 kb on + strand at 417.128 kb on + strand at 417.664 kb on + strand at 417.664 kb on + strand at 417.664 kb on + strand at 417.665 kb on - strand at 417.665 kb on - strand at 417.672 kb on + strand at 417.672 kb on + strand at 417.672 kb on + strand at 417.673 kb on - strand at 417.729 kb on + strand at 417.750 kb on + strand at 417.751 kb on - strand at 417.780 kb on - strand at 418.046 kb on + strand, within HER17_RS01780 at 418.189 kb on + strand, within HER17_RS01780 at 418.367 kb on - strand, within HER17_RS01780 at 418.458 kb on + strand, within HER17_RS01780 at 418.459 kb on - strand, within HER17_RS01780 at 418.660 kb on + strand, within HER17_RS01780 at 418.660 kb on + strand, within HER17_RS01780 at 418.660 kb on + strand, within HER17_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 416,291 + HER17_RS01770 0.61 -0.9 416,371 - HER17_RS01770 0.67 +2.4 416,453 + HER17_RS01770 0.73 -0.2 416,467 - HER17_RS01770 0.74 -0.7 416,497 - HER17_RS01770 0.77 -1.5 416,622 + HER17_RS01770 0.87 -0.2 416,630 + HER17_RS01770 0.87 +1.1 416,675 + +2.1 416,675 + -1.5 416,675 + -0.1 416,676 - -0.6 416,700 - +0.8 416,736 + +1.1 416,736 + +1.2 416,796 - -0.1 416,820 + +0.7 416,820 + +1.7 416,820 + -0.0 416,820 + +2.6 416,821 - +2.2 416,821 - -0.4 416,850 + +0.9 416,872 - +1.4 416,897 - +1.1 416,897 - -0.3 416,901 + -0.5 416,901 + +2.1 416,901 + +1.7 416,901 + -0.5 416,902 - +0.5 416,960 + -0.9 416,960 + +0.7 416,960 + +0.2 416,960 + -0.4 416,961 - +1.1 416,961 - +0.7 416,963 + +0.1 416,963 + -0.1 416,963 + -0.4 416,963 + -0.5 416,963 + -1.4 416,963 + +0.6 416,963 + +1.4 416,964 - +0.1 416,964 - -1.9 417,011 + -0.1 417,011 + +0.6 417,074 + +4.8 417,128 + -0.5 417,664 + +3.3 417,664 + +2.2 417,664 + +2.1 417,665 - -0.5 417,665 - +1.1 417,672 + +0.1 417,672 + +1.1 417,672 + +2.6 417,673 - -0.5 417,729 + -0.5 417,750 + -0.2 417,751 - -0.9 417,780 - +0.1 418,046 + HER17_RS01780 0.30 -1.9 418,189 + HER17_RS01780 0.43 +3.1 418,367 - HER17_RS01780 0.60 +1.4 418,458 + HER17_RS01780 0.68 -0.5 418,459 - HER17_RS01780 0.68 +1.1 418,660 + HER17_RS01780 0.87 +0.1 418,660 + HER17_RS01780 0.87 -0.9 418,660 + HER17_RS01780 0.87 -0.5
Or see this region's nucleotide sequence