Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21530

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,824,424	+				+1.5
4,824,424	+				+0.9
4,824,424	+				-0.7
4,824,424	+				+3.2
4,824,425	-				-0.4
4,824,453	+				+1.7
4,824,512	-		HER17_RS21525	0.14	+0.6
4,824,526	+		HER17_RS21525	0.15	+2.2
4,824,526	+		HER17_RS21525	0.15	+2.6
4,824,526	+		HER17_RS21525	0.15	+1.3
4,824,526	+		HER17_RS21525	0.15	+1.5
4,824,526	+		HER17_RS21525	0.15	+1.5
4,824,526	+		HER17_RS21525	0.15	+0.5
4,824,526	+		HER17_RS21525	0.15	+1.4
4,824,526	+		HER17_RS21525	0.15	+0.7
4,824,526	+		HER17_RS21525	0.15	+1.4
4,824,527	-		HER17_RS21525	0.15	+0.8
4,824,527	-		HER17_RS21525	0.15	+4.8
4,824,527	-		HER17_RS21525	0.15	-0.4
4,824,527	-		HER17_RS21525	0.15	-0.5
4,824,527	-		HER17_RS21525	0.15	+2.8
4,824,528	+		HER17_RS21525	0.15	+1.5
4,824,528	+		HER17_RS21525	0.15	-1.3
4,824,529	-		HER17_RS21525	0.16	+0.5
4,824,529	-		HER17_RS21525	0.16	+3.3
4,824,529	-		HER17_RS21525	0.16	+4.0
4,824,552	+		HER17_RS21525	0.18	+2.7
4,824,580	+		HER17_RS21525	0.21	+2.6
4,824,580	+		HER17_RS21525	0.21	-0.8
4,824,581	-		HER17_RS21525	0.21	+0.5
4,824,597	+		HER17_RS21525	0.22	+1.1
4,824,658	+		HER17_RS21525	0.29	+2.9
4,824,658	+		HER17_RS21525	0.29	+1.7
4,824,659	-		HER17_RS21525	0.29	+1.9
4,824,685	+		HER17_RS21525	0.31	+3.1
4,824,686	-		HER17_RS21525	0.31	+1.3
4,824,746	+		HER17_RS21525	0.37	+1.5
4,824,746	+		HER17_RS21525	0.37	+1.0
4,824,747	-		HER17_RS21525	0.37	+1.9
4,824,782	+		HER17_RS21525	0.41	+0.2
4,824,782	+		HER17_RS21525	0.41	+0.9
4,824,782	+		HER17_RS21525	0.41	+1.9
4,824,792	+		HER17_RS21525	0.42	+1.1
4,824,792	+		HER17_RS21525	0.42	+0.6
4,824,792	+		HER17_RS21525	0.42	+1.5
4,824,793	-		HER17_RS21525	0.42	+2.7
4,824,793	-		HER17_RS21525	0.42	+0.8
4,824,805	+		HER17_RS21525	0.43	+3.2
4,824,806	-		HER17_RS21525	0.43	-0.8
4,824,831	-		HER17_RS21525	0.46	+0.5
4,824,839	-		HER17_RS21525	0.47	+1.3
4,824,839	-		HER17_RS21525	0.47	+0.9
4,824,858	+		HER17_RS21525	0.49	+0.7
4,824,858	+		HER17_RS21525	0.49	+1.2
4,824,859	-		HER17_RS21525	0.49	+2.3
4,824,859	-		HER17_RS21525	0.49	+0.5
4,824,859	-		HER17_RS21525	0.49	+3.3
4,824,859	-		HER17_RS21525	0.49	-2.2
4,824,893	-		HER17_RS21525	0.52	+2.3
4,824,893	-		HER17_RS21525	0.52	+2.1
4,824,893	-		HER17_RS21525	0.52	+2.3
4,824,898	+		HER17_RS21525	0.53	+2.6
4,824,898	+		HER17_RS21525	0.53	+2.4
4,824,898	+		HER17_RS21525	0.53	-0.8
4,824,899	-		HER17_RS21525	0.53	+1.1
4,824,901	+		HER17_RS21525	0.53	+1.1
4,824,901	+		HER17_RS21525	0.53	+1.2
4,824,902	-		HER17_RS21525	0.53	-0.8
4,824,940	+		HER17_RS21525	0.57	+1.3
4,824,940	+		HER17_RS21525	0.57	+2.3
4,824,941	-		HER17_RS21525	0.57	+0.9
4,824,946	+		HER17_RS21525	0.57	+2.5
4,824,946	+		HER17_RS21525	0.57	+0.3
4,824,946	+		HER17_RS21525	0.57	+1.4
4,824,946	+		HER17_RS21525	0.57	+2.1
4,824,946	+		HER17_RS21525	0.57	+1.6
4,824,947	-		HER17_RS21525	0.58	-1.7
4,824,947	-		HER17_RS21525	0.58	+1.8
4,824,947	-		HER17_RS21525	0.58	+0.5
4,824,947	-		HER17_RS21525	0.58	+1.9
4,824,947	-		HER17_RS21525	0.58	+2.1
4,824,950	+		HER17_RS21525	0.58	+2.1
4,824,951	-		HER17_RS21525	0.58	+1.4
4,824,951	-		HER17_RS21525	0.58	+0.4
4,824,951	-		HER17_RS21525	0.58	+1.8
4,824,951	-		HER17_RS21525	0.58	+2.4
4,824,952	+		HER17_RS21525	0.58	+0.7
4,824,952	+		HER17_RS21525	0.58	+1.3
4,824,952	+		HER17_RS21525	0.58	+2.6
4,824,952	+		HER17_RS21525	0.58	+3.2
4,824,952	+		HER17_RS21525	0.58	+2.3
4,824,952	+		HER17_RS21525	0.58	+1.5
4,824,952	+		HER17_RS21525	0.58	+0.1
4,824,952	+		HER17_RS21525	0.58	+3.1
4,824,952	+		HER17_RS21525	0.58	+3.1
4,824,952	+		HER17_RS21525	0.58	+1.8
4,824,952	+		HER17_RS21525	0.58	+0.6
4,824,953	-		HER17_RS21525	0.58	+1.3
4,824,953	-		HER17_RS21525	0.58	+2.0
4,824,953	-		HER17_RS21525	0.58	+2.5
4,824,953	-		HER17_RS21525	0.58	+0.5
4,824,953	-		HER17_RS21525	0.58	+2.6
4,824,953	-		HER17_RS21525	0.58	+1.1
4,824,953	-		HER17_RS21525	0.58	+2.0
4,824,953	-		HER17_RS21525	0.58	+0.4
4,824,953	-		HER17_RS21525	0.58	+3.7
4,824,953	-		HER17_RS21525	0.58	+1.4
4,824,953	-		HER17_RS21525	0.58	+0.1
4,824,953	-		HER17_RS21525	0.58	+1.1
4,825,011	-		HER17_RS21525	0.64	+1.9
4,825,052	-		HER17_RS21525	0.68	+0.2
4,825,052	-		HER17_RS21525	0.68	-1.3
4,825,099	+		HER17_RS21525	0.73	+1.3
4,825,101	+		HER17_RS21525	0.73	+2.9
4,825,101	+		HER17_RS21525	0.73	+1.6
4,825,114	-		HER17_RS21525	0.74	+2.9
4,825,127	+		HER17_RS21525	0.76	+2.4
4,825,160	-		HER17_RS21525	0.79	+1.2
4,825,160	-		HER17_RS21525	0.79	+1.5
4,825,160	-		HER17_RS21525	0.79	+1.7
4,825,236	+		HER17_RS21525	0.87	+1.5
4,825,236	+		HER17_RS21525	0.87	+4.0
4,825,236	+		HER17_RS21525	0.87	+1.5
4,825,237	-		HER17_RS21525	0.87	+0.8
4,825,237	-		HER17_RS21525	0.87	+0.3
4,825,300	+				+1.1
4,825,303	+				-0.1
4,825,316	+				+2.1
4,825,321	+				+1.9
4,825,321	+				+1.4
4,825,321	+				+2.8
4,825,322	-				-0.3
4,825,327	+				+1.5
4,825,328	-				+3.4
4,825,444	+				+1.7
4,825,499	-		HER17_RS21530	0.14	+2.2
4,825,520	+		HER17_RS21530	0.16	+1.1
4,825,531	+		HER17_RS21530	0.17	+1.8
4,825,532	-		HER17_RS21530	0.17	-0.7
4,825,538	-		HER17_RS21530	0.18	+0.6
4,825,538	-		HER17_RS21530	0.18	-0.3
4,825,552	+		HER17_RS21530	0.19	+2.1
4,825,553	-		HER17_RS21530	0.19	-1.8
4,825,555	+		HER17_RS21530	0.20	-0.5
4,825,555	+		HER17_RS21530	0.20	+2.6
4,825,568	+		HER17_RS21530	0.21	-0.4
4,825,568	+		HER17_RS21530	0.21	+0.5
4,825,585	+		HER17_RS21530	0.23	+1.2
4,825,586	-		HER17_RS21530	0.23	+0.5
4,825,610	+		HER17_RS21530	0.26	+1.7
4,825,610	+		HER17_RS21530	0.26	-0.5
4,825,610	+		HER17_RS21530	0.26	-0.3
4,825,610	+		HER17_RS21530	0.26	+1.5
4,825,611	-		HER17_RS21530	0.26	+0.5
4,825,611	-		HER17_RS21530	0.26	-0.2
4,825,616	+		HER17_RS21530	0.26	+2.5
4,825,616	+		HER17_RS21530	0.26	+1.8
4,825,617	-		HER17_RS21530	0.26	+0.9
4,825,617	-		HER17_RS21530	0.26	-0.7
4,825,636	+		HER17_RS21530	0.28	-0.3
4,825,637	-		HER17_RS21530	0.28	+0.2
4,825,637	-		HER17_RS21530	0.28	-1.8
4,825,711	+		HER17_RS21530	0.36	+3.6
4,825,756	+		HER17_RS21530	0.41	+0.9
4,825,757	-		HER17_RS21530	0.41	-0.1
4,825,808	-		HER17_RS21530	0.47	+0.5
4,825,808	-		HER17_RS21530	0.47	+0.7
4,825,814	+		HER17_RS21530	0.48	+1.3
4,825,885	+		HER17_RS21530	0.55	+1.7
4,825,885	+		HER17_RS21530	0.55	+0.9
4,825,885	+		HER17_RS21530	0.55	+0.9
4,825,885	+		HER17_RS21530	0.55	+1.6
4,825,886	-		HER17_RS21530	0.55	-0.4
4,825,886	-		HER17_RS21530	0.55	+0.1
4,825,886	-		HER17_RS21530	0.55	+1.3
4,825,886	-		HER17_RS21530	0.55	-0.8
4,825,886	-		HER17_RS21530	0.55	+0.4
4,825,906	+		HER17_RS21530	0.57	+1.7
4,825,907	-		HER17_RS21530	0.58	-0.6
4,825,907	-		HER17_RS21530	0.58	+0.5
4,825,932	+		HER17_RS21530	0.60	+2.2
4,825,932	+		HER17_RS21530	0.60	+1.1
4,826,059	+		HER17_RS21530	0.74	-0.1
4,826,060	-		HER17_RS21530	0.74	+0.5
4,826,060	-		HER17_RS21530	0.74	+1.3
4,826,060	-		HER17_RS21530	0.74	+2.5
4,826,060	-		HER17_RS21530	0.74	-0.8
4,826,063	-		HER17_RS21530	0.74	-0.3
4,826,073	-		HER17_RS21530	0.76	+1.2
4,826,086	+		HER17_RS21530	0.77	+2.0
4,826,086	+		HER17_RS21530	0.77	+4.9
4,826,122	+		HER17_RS21530	0.81	+0.8
4,826,122	+		HER17_RS21530	0.81	+2.2
4,826,194	+		HER17_RS21530	0.89	+3.7
4,826,194	+		HER17_RS21530	0.89	+0.5
4,826,194	+		HER17_RS21530	0.89	+2.6
4,826,194	+		HER17_RS21530	0.89	-1.3
4,826,195	-		HER17_RS21530	0.89	+0.4
4,826,195	-		HER17_RS21530	0.89	+1.4
4,826,196	+		HER17_RS21530	0.89	+1.9
4,826,196	+		HER17_RS21530	0.89	+1.4
4,826,196	+		HER17_RS21530	0.89	+2.3
4,826,196	+		HER17_RS21530	0.89	+2.6
4,826,196	+		HER17_RS21530	0.89	+1.1
4,826,197	-		HER17_RS21530	0.89	-0.4
4,826,197	-		HER17_RS21530	0.89	+1.5
4,826,197	-		HER17_RS21530	0.89	+1.6
4,826,197	-		HER17_RS21530	0.89	-0.1
4,826,197	-		HER17_RS21530	0.89	+1.2
4,826,251	+				-0.5
4,826,263	+				-0.3
4,826,263	+				+0.8
4,826,264	-				-0.2
4,826,266	+				-0.1
4,826,267	-				+1.1
4,826,301	-				+0.6
4,826,301	-				+1.9
4,826,315	+				-0.8
4,826,324	-				+0.8
4,826,361	+				+0.5
4,826,362	-				+0.2
4,826,372	+				+0.5
4,826,372	+				+1.4
4,826,373	-				-0.7
4,826,373	-				+1.4
4,826,451	+				+1.5
4,826,459	-				+0.0
4,826,459	-				-0.5
4,826,459	-				-0.1
4,826,599	+		HER17_RS21535	0.26	+4.5
4,826,600	-		HER17_RS21535	0.26	+0.1
4,826,600	-		HER17_RS21535	0.26	-1.0
4,826,627	-		HER17_RS21535	0.29	+3.0
4,826,683	-		HER17_RS21535	0.35	-0.5
4,826,685	+		HER17_RS21535	0.35	+0.5
4,826,719	-		HER17_RS21535	0.39	-0.9
4,826,727	+		HER17_RS21535	0.40	+1.2
4,826,811	+		HER17_RS21535	0.50	-0.3
4,826,926	-		HER17_RS21535	0.62	+0.7
4,826,926	-		HER17_RS21535	0.62	-1.8
4,826,926	-		HER17_RS21535	0.62	-0.3
4,826,928	+		HER17_RS21535	0.63	+2.2
4,826,929	-		HER17_RS21535	0.63	-0.0
4,826,967	+		HER17_RS21535	0.67	+1.6
4,826,967	+		HER17_RS21535	0.67	+2.1
4,826,967	+		HER17_RS21535	0.67	+1.7
4,826,968	-		HER17_RS21535	0.67	-0.1
4,826,968	-		HER17_RS21535	0.67	+1.2
4,826,971	+		HER17_RS21535	0.68	+0.9
4,826,971	+		HER17_RS21535	0.68	+0.4
4,827,077	-		HER17_RS21535	0.80	+0.7
4,827,156	+		HER17_RS21535	0.88	+1.3
4,827,157	-		HER17_RS21535	0.89	-0.4
4,827,177	+				+1.8
4,827,177	+				+0.8
4,827,177	+				+2.5
4,827,178	-				+0.8
4,827,178	-				-1.7
4,827,195	+				+0.9
4,827,237	+				+0.6
4,827,238	-				+0.4
4,827,238	-				-0.9
4,827,285	+				+1.3
4,827,285	+				+0.5
4,827,286	-				-1.1
4,827,290	-				-0.4