Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21095

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,719,148	+		HER17_RS21090	0.42	+0.8
4,719,148	+		HER17_RS21090	0.42	-0.1
4,719,240	+		HER17_RS21090	0.48	+1.5
4,719,240	+		HER17_RS21090	0.48	-0.5
4,719,241	-		HER17_RS21090	0.48	+2.8
4,719,241	-		HER17_RS21090	0.48	+0.2
4,719,241	-		HER17_RS21090	0.48	+8.5
4,719,271	+		HER17_RS21090	0.50	+0.3
4,719,316	+		HER17_RS21090	0.53	+0.1
4,719,317	-		HER17_RS21090	0.53	-0.8
4,719,416	+		HER17_RS21090	0.60	+0.4
4,719,519	-		HER17_RS21090	0.67	-0.8
4,719,571	-		HER17_RS21090	0.71	-0.2
4,719,690	+		HER17_RS21090	0.79	+0.2
4,719,690	+		HER17_RS21090	0.79	+0.9
4,719,691	-		HER17_RS21090	0.79	-0.1
4,719,691	-		HER17_RS21090	0.79	+3.4
4,719,691	-		HER17_RS21090	0.79	+1.2
4,719,712	-		HER17_RS21090	0.80	-1.5
4,719,714	+		HER17_RS21090	0.80	-0.3
4,719,714	+		HER17_RS21090	0.80	+0.1
4,719,714	+		HER17_RS21090	0.80	-0.5
4,719,714	+		HER17_RS21090	0.80	+3.0
4,719,714	+		HER17_RS21090	0.80	+1.1
4,719,715	-		HER17_RS21090	0.80	+0.0
4,719,718	-		HER17_RS21090	0.81	+0.3
4,719,742	-		HER17_RS21090	0.82	-0.8
4,719,742	-		HER17_RS21090	0.82	+0.3
4,719,748	+		HER17_RS21090	0.83	-1.5
4,719,749	-		HER17_RS21090	0.83	-1.3
4,719,957	+				-1.2
4,719,957	+				-0.2
4,719,958	-				+0.1
4,719,958	-				+0.2
4,719,963	+				+0.8
4,719,963	+				+0.5
4,719,963	+				+1.3
4,719,963	+				+1.3
4,719,963	+				-1.1
4,719,963	+				-0.1
4,719,964	-				-0.5
4,719,964	-				+0.3
4,719,964	-				+0.2
4,719,984	+				-0.5
4,719,984	+				-0.1
4,719,984	+				+0.3
4,719,985	-				+0.9
4,719,985	-				-0.8
4,719,997	+				-0.5
4,720,011	+				+1.4
4,720,150	+		HER17_RS21095	0.14	+1.5
4,720,237	+		HER17_RS21095	0.22	-0.0
4,720,244	+		HER17_RS21095	0.23	+0.1
4,720,244	+		HER17_RS21095	0.23	+0.5
4,720,294	+		HER17_RS21095	0.28	-0.8
4,720,294	+		HER17_RS21095	0.28	-1.3
4,720,294	+		HER17_RS21095	0.28	-1.1
4,720,294	+		HER17_RS21095	0.28	-1.1
4,720,294	+		HER17_RS21095	0.28	+1.1
4,720,295	-		HER17_RS21095	0.28	+1.2
4,720,295	-		HER17_RS21095	0.28	+0.7
4,720,300	+		HER17_RS21095	0.29	-1.7
4,720,300	+		HER17_RS21095	0.29	+0.1
4,720,301	-		HER17_RS21095	0.29	+0.5
4,720,319	+		HER17_RS21095	0.31	+0.9
4,720,319	+		HER17_RS21095	0.31	+1.5
4,720,319	+		HER17_RS21095	0.31	-0.5
4,720,330	-		HER17_RS21095	0.32	+0.5
4,720,330	-		HER17_RS21095	0.32	+0.7
4,720,414	-		HER17_RS21095	0.40	+1.5
4,720,450	+		HER17_RS21095	0.44	+0.7
4,720,450	+		HER17_RS21095	0.44	-0.2
4,720,450	+		HER17_RS21095	0.44	+0.5
4,720,450	+		HER17_RS21095	0.44	+3.8
4,720,459	+		HER17_RS21095	0.45	-1.2
4,720,459	+		HER17_RS21095	0.45	+0.8
4,720,459	+		HER17_RS21095	0.45	+1.1
4,720,459	+		HER17_RS21095	0.45	-0.5
4,720,459	+		HER17_RS21095	0.45	+0.7
4,720,459	+		HER17_RS21095	0.45	+1.6
4,720,460	-		HER17_RS21095	0.45	+0.1
4,720,460	-		HER17_RS21095	0.45	-1.3
4,720,460	-		HER17_RS21095	0.45	-0.7
4,720,460	-		HER17_RS21095	0.45	-0.5
4,720,462	+		HER17_RS21095	0.45	+0.6
4,720,463	-		HER17_RS21095	0.45	-1.7
4,720,463	-		HER17_RS21095	0.45	+0.5
4,720,481	+		HER17_RS21095	0.47	-1.3
4,720,481	+		HER17_RS21095	0.47	-0.2
4,720,481	+		HER17_RS21095	0.47	+0.0
4,720,482	-		HER17_RS21095	0.47	+0.7
4,720,484	-		HER17_RS21095	0.47	-0.5
4,720,484	-		HER17_RS21095	0.47	+2.1
4,720,505	+		HER17_RS21095	0.49	+1.0
4,720,563	-		HER17_RS21095	0.55	+0.8
4,720,563	-		HER17_RS21095	0.55	+0.5
4,720,575	+		HER17_RS21095	0.56	+0.3
4,720,575	+		HER17_RS21095	0.56	-1.2
4,720,575	+		HER17_RS21095	0.56	+0.2
4,720,576	-		HER17_RS21095	0.57	-0.9
4,720,576	-		HER17_RS21095	0.57	-0.9
4,720,580	-		HER17_RS21095	0.57	-1.4
4,720,604	+		HER17_RS21095	0.59	+0.1
4,720,604	+		HER17_RS21095	0.59	-0.2
4,720,605	-		HER17_RS21095	0.60	+0.7
4,720,607	+		HER17_RS21095	0.60	-0.5
4,720,607	+		HER17_RS21095	0.60	+0.9
4,720,607	+		HER17_RS21095	0.60	-0.8
4,720,607	+		HER17_RS21095	0.60	-0.8
4,720,607	+		HER17_RS21095	0.60	-0.9
4,720,607	+		HER17_RS21095	0.60	+0.9
4,720,608	-		HER17_RS21095	0.60	+0.9
4,720,608	-		HER17_RS21095	0.60	+0.2
4,720,608	-		HER17_RS21095	0.60	-0.7
4,720,608	-		HER17_RS21095	0.60	+0.5
4,720,608	-		HER17_RS21095	0.60	+0.3
4,720,608	-		HER17_RS21095	0.60	+0.6
4,720,660	+		HER17_RS21095	0.65	-0.2
4,720,661	-		HER17_RS21095	0.65	-0.8
4,720,690	-		HER17_RS21095	0.68	-0.3
4,720,690	-		HER17_RS21095	0.68	+1.2
4,720,706	+		HER17_RS21095	0.70	+1.1
4,720,706	+		HER17_RS21095	0.70	-0.2
4,720,707	-		HER17_RS21095	0.70	+0.4
4,720,707	-		HER17_RS21095	0.70	-0.9
4,720,727	+		HER17_RS21095	0.72	+0.5
4,720,727	+		HER17_RS21095	0.72	-0.7
4,720,728	-		HER17_RS21095	0.72	-0.1
4,720,729	+		HER17_RS21095	0.72	+0.4
4,720,729	+		HER17_RS21095	0.72	+0.2
4,720,729	+		HER17_RS21095	0.72	-0.8
4,720,729	+		HER17_RS21095	0.72	-0.3
4,720,730	-		HER17_RS21095	0.72	-0.5
4,720,730	-		HER17_RS21095	0.72	+0.9
4,720,730	-		HER17_RS21095	0.72	-0.1
4,720,730	-		HER17_RS21095	0.72	+0.9
4,720,730	-		HER17_RS21095	0.72	-0.7
4,720,730	-		HER17_RS21095	0.72	-1.5
4,720,746	-		HER17_RS21095	0.74	-0.8
4,720,746	-		HER17_RS21095	0.74	+0.5
4,720,764	+		HER17_RS21095	0.76	-0.9
4,720,764	+		HER17_RS21095	0.76	+0.7
4,720,764	+		HER17_RS21095	0.76	+0.9
4,720,765	-		HER17_RS21095	0.76	+0.5
4,720,815	+		HER17_RS21095	0.81	+0.0
4,720,815	+		HER17_RS21095	0.81	+0.8
4,720,816	-		HER17_RS21095	0.81	+1.2
4,720,820	-		HER17_RS21095	0.81	+0.1
4,720,875	-		HER17_RS21095	0.87	-0.6
4,720,875	-		HER17_RS21095	0.87	-0.1
4,720,875	-		HER17_RS21095	0.87	+0.2
4,720,922	+				-0.9
4,720,922	+				+0.7
4,720,922	+				-0.8
4,720,922	+				+0.4
4,720,922	+				+1.0
4,720,923	-				+1.3
4,720,923	-				+0.3
4,720,923	-				+0.2
4,720,923	-				+1.1
4,720,923	-				+0.7
4,720,923	-				-0.5
4,720,923	-				+1.1
4,720,924	+				+1.0
4,720,924	+				-0.7
4,720,924	+				+0.2
4,720,924	+				-0.1
4,720,924	+				-0.1
4,720,924	+				+0.5
4,720,925	-				-0.1
4,720,925	-				-0.3
4,720,925	-				-0.3
4,720,925	-				-0.8
4,720,927	+				+0.2
4,720,927	+				-0.8
4,720,927	+				+0.8
4,720,927	+				-0.4
4,720,927	+				-0.1
4,720,928	-				-0.5
4,720,928	-				+0.5
4,720,928	-				+0.8
4,720,928	-				-0.8
4,720,937	+				-0.1
4,721,203	+				-2.5
4,721,212	+				+0.7
4,721,212	+				-1.2
4,721,212	+				+0.4
4,721,212	+				-1.9
4,721,212	+				-0.5
4,721,212	+				-0.9
4,721,212	+				+0.6
4,721,213	-				+0.5
4,721,213	-				-0.3
4,721,213	-				+0.1
4,721,213	-				-1.7
4,721,214	-				-0.4
4,721,220	+				+0.0
4,721,220	+				+0.3
4,721,220	+				-2.9
4,721,221	-				-0.6
4,721,239	+				+0.1
4,721,239	+				+2.1
4,721,240	-				-0.1
4,721,247	+				-1.2
4,721,247	+				+0.4
4,721,247	+				-0.1
4,721,247	+				-1.7
4,721,248	-				-0.7
4,721,248	-				+0.8
4,721,277	+				+0.0
4,721,364	+				-0.7
4,721,365	-				-0.7
4,721,422	+		HER17_RS21100	0.13	-0.5
4,721,458	-		HER17_RS21100	0.16	-3.4
4,721,458	-		HER17_RS21100	0.16	-2.5
4,721,554	+		HER17_RS21100	0.22	+0.5
4,721,573	+		HER17_RS21100	0.23	+0.2
4,721,589	+		HER17_RS21100	0.24	+0.2
4,721,590	-		HER17_RS21100	0.24	-0.9
4,721,590	-		HER17_RS21100	0.24	+1.5
4,721,590	-		HER17_RS21100	0.24	+0.4
4,721,592	+		HER17_RS21100	0.24	-1.9
4,721,593	-		HER17_RS21100	0.24	-2.2
4,721,593	-		HER17_RS21100	0.24	-0.9
4,721,593	-		HER17_RS21100	0.24	+0.3
4,721,662	+		HER17_RS21100	0.29	+0.0
4,721,676	+		HER17_RS21100	0.30	+1.5
4,721,677	-		HER17_RS21100	0.30	+0.7
4,721,677	-		HER17_RS21100	0.30	-1.3
4,721,677	-		HER17_RS21100	0.30	+0.8
4,721,677	-		HER17_RS21100	0.30	+0.1
4,721,677	-		HER17_RS21100	0.30	+0.3
4,721,680	+		HER17_RS21100	0.30	-0.1
4,721,680	+		HER17_RS21100	0.30	-0.7
4,721,680	+		HER17_RS21100	0.30	-0.8
4,721,681	-		HER17_RS21100	0.30	-0.9
4,721,681	-		HER17_RS21100	0.30	+1.2
4,721,800	-		HER17_RS21100	0.38	-1.9
4,721,803	+		HER17_RS21100	0.38	+0.5
4,721,804	-		HER17_RS21100	0.38	-0.7
4,721,804	-		HER17_RS21100	0.38	-0.1
4,721,836	+		HER17_RS21100	0.40	+1.8
4,721,836	+		HER17_RS21100	0.40	-1.1
4,721,837	-		HER17_RS21100	0.40	+0.4
4,721,837	-		HER17_RS21100	0.40	+1.1
4,721,989	-		HER17_RS21100	0.50	+0.9
4,721,989	-		HER17_RS21100	0.50	-0.5
4,721,989	-		HER17_RS21100	0.50	+0.0
4,721,989	-		HER17_RS21100	0.50	-1.8
4,721,989	-		HER17_RS21100	0.50	+0.7
4,721,989	-		HER17_RS21100	0.50	+0.2