Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21055

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,708,228	+				-0.2
4,708,228	+				+0.6
4,708,267	+				-0.6
4,708,296	+				-1.2
4,708,297	-				-1.3
4,708,318	-		HER17_RS21050	0.12	+0.2
4,708,435	+		HER17_RS21050	0.30	-0.4
4,708,468	-		HER17_RS21050	0.35	+2.5
4,708,573	-		HER17_RS21050	0.52	+0.2
4,708,617	+		HER17_RS21050	0.58	+0.5
4,708,667	+		HER17_RS21050	0.66	-0.9
4,708,681	-		HER17_RS21050	0.68	-0.3
4,708,692	+		HER17_RS21050	0.70	-1.3
4,708,707	+		HER17_RS21050	0.72	-0.6
4,708,738	-		HER17_RS21050	0.77	-0.5
4,708,743	+		HER17_RS21050	0.78	+0.5
4,708,748	+		HER17_RS21050	0.78	+0.5
4,708,749	-		HER17_RS21050	0.79	-0.2
4,708,774	-		HER17_RS21050	0.82	-1.2
4,708,824	+				+1.5
4,708,825	-				-1.9
4,708,868	-				-0.4
4,708,910	+				+0.1
4,708,910	+				-0.5
4,708,911	-				+0.7
4,708,911	-				+2.3
4,708,911	-				+0.3
4,708,914	+				-0.8
4,708,915	-				+0.7
4,708,965	+				+1.3
4,708,965	+				-0.1
4,708,966	-				+1.0
4,708,984	+				-0.5
4,708,985	-				-0.6
4,708,988	+				-1.0
4,708,988	+				-1.4
4,708,988	+				-0.5
4,708,988	+				-2.6
4,708,988	+				+2.1
4,708,988	+				-0.3
4,708,989	-				-0.6
4,708,989	-				+0.6
4,709,015	-				-0.1
4,709,080	+				+0.8
4,709,081	-				-0.3
4,709,087	-				+1.0
4,709,138	-				-1.1
4,709,142	+				-0.1
4,709,239	+				+0.2
4,709,240	-				+0.9
4,709,243	+				-0.7
4,709,244	-				+1.3
4,709,262	-				-0.5
4,709,301	-		HER17_RS21055	0.11	-0.9
4,709,301	-		HER17_RS21055	0.11	+0.7
4,709,357	+		HER17_RS21055	0.15	+0.5
4,709,359	+		HER17_RS21055	0.15	+0.2
4,709,359	+		HER17_RS21055	0.15	-0.1
4,709,360	-		HER17_RS21055	0.15	-0.5
4,709,360	-		HER17_RS21055	0.15	+1.5
4,709,360	-		HER17_RS21055	0.15	+0.8
4,709,545	+		HER17_RS21055	0.29	-0.6
4,709,593	+		HER17_RS21055	0.32	-0.6
4,709,594	-		HER17_RS21055	0.32	+0.2
4,709,594	-		HER17_RS21055	0.32	-0.1
4,709,630	-		HER17_RS21055	0.35	-0.5
4,709,630	-		HER17_RS21055	0.35	+0.4
4,709,853	-		HER17_RS21055	0.52	-0.5
4,709,932	+		HER17_RS21055	0.58	+0.1
4,709,932	+		HER17_RS21055	0.58	-0.1
4,709,932	+		HER17_RS21055	0.58	+0.1
4,709,933	-		HER17_RS21055	0.58	-0.8
4,709,933	-		HER17_RS21055	0.58	-0.8
4,709,956	+		HER17_RS21055	0.59	+0.3
4,709,978	+		HER17_RS21055	0.61	+0.6
4,709,978	+		HER17_RS21055	0.61	-0.9
4,709,979	-		HER17_RS21055	0.61	-1.6
4,709,979	-		HER17_RS21055	0.61	-0.5
4,710,044	-		HER17_RS21055	0.66	-1.6
4,710,082	+		HER17_RS21055	0.69	+2.3
4,710,083	-		HER17_RS21055	0.69	-0.7
4,710,107	+		HER17_RS21055	0.71	+0.5
4,710,108	-		HER17_RS21055	0.71	-0.3
4,710,109	+		HER17_RS21055	0.71	-1.6
4,710,109	+		HER17_RS21055	0.71	+0.3
4,710,109	+		HER17_RS21055	0.71	+0.3
4,710,109	+		HER17_RS21055	0.71	+0.4
4,710,109	+		HER17_RS21055	0.71	+0.7
4,710,109	+		HER17_RS21055	0.71	-0.5
4,710,110	-		HER17_RS21055	0.71	-0.1
4,710,110	-		HER17_RS21055	0.71	+0.2
4,710,110	-		HER17_RS21055	0.71	-0.1
4,710,110	-		HER17_RS21055	0.71	+0.8
4,710,110	-		HER17_RS21055	0.71	+0.2
4,710,110	-		HER17_RS21055	0.71	-1.9
4,710,208	+		HER17_RS21055	0.78	-0.3
4,710,209	-		HER17_RS21055	0.78	-0.3
4,710,347	-		HER17_RS21055	0.88	+0.5
4,710,347	-		HER17_RS21055	0.88	+1.7
4,710,382	+				+0.9
4,710,382	+				+3.2
4,710,382	+				+2.3
4,710,382	+				-0.1
4,710,383	-				+0.2
4,710,383	-				+0.9
4,710,458	+				+0.3
4,710,464	+				+1.5
4,710,504	-				+2.1
4,710,504	-				-0.3
4,710,509	+				-2.3
4,710,509	+				+0.9
4,710,510	-				-0.5
4,710,535	+				-0.5
4,710,535	+				-0.2
4,710,536	-				-0.9
4,710,536	-				+1.1
4,710,537	+				-1.6
4,710,537	+				+0.8
4,710,537	+				-1.1
4,710,537	+				-0.8
4,710,537	+				-0.2
4,710,537	+				+1.1
4,710,538	-				-0.7
4,710,538	-				-0.4
4,710,538	-				-2.1
4,710,558	+				+1.1
4,710,559	+				+0.2
4,710,559	+				+4.3
4,710,560	-				+0.6
4,710,560	-				+0.7
4,710,560	-				+0.4
4,710,560	-				+0.5
4,710,560	-				+1.2
4,710,564	+				+1.3
4,710,565	-				+0.1
4,710,565	-				-0.3
4,710,721	+				+1.5
4,710,722	-				+1.7
4,710,722	-				+0.0
4,710,763	+				-0.9
4,710,770	+				-0.9
4,710,770	+				+0.7
4,710,770	+				-2.4
4,710,771	-				-0.2
4,710,771	-				+1.3
4,710,771	-				-0.4
4,710,779	-				+0.2
4,710,812	+				+0.1
4,710,900	+				-0.8
4,710,901	-				+1.4
4,710,901	-				+0.9
4,710,915	+				-0.9
4,710,915	+				-0.1
4,710,915	+				+0.4
4,710,915	+				-1.1
4,710,915	+				+0.6
4,710,915	+				+0.5
4,710,915	+				-0.8
4,710,915	+				-0.1
4,710,915	+				-0.8
4,710,915	+				+0.7
4,710,915	+				+0.5
4,710,915	+				+2.6
4,710,915	+				+1.7
4,710,915	+				+0.8
4,710,915	+				-1.3
4,710,915	+				+0.7
4,710,915	+				-0.4
4,710,915	+				-0.1
4,710,915	+				+0.2
4,710,915	+				+0.9
4,710,915	+				-0.3
4,710,916	-				-0.1
4,710,916	-				+0.5
4,710,916	-				-1.3
4,710,916	-				-1.0
4,710,916	-				+0.0
4,710,916	-				-0.1
4,710,916	-				+0.9
4,710,916	-				-1.6
4,710,916	-				+0.2
4,710,916	-				-0.1
4,710,916	-				+0.1
4,710,916	-				+0.3
4,710,916	-				+0.7
4,710,916	-				+0.5
4,710,916	-				-0.3
4,710,916	-				-0.7
4,710,916	-				-0.1
4,710,916	-				-1.1
4,710,972	+				+0.4
4,710,996	+		HER17_RS21060	0.14	-0.6
4,710,997	-		HER17_RS21060	0.14	+0.5
4,711,004	+		HER17_RS21060	0.15	-1.6
4,711,004	+		HER17_RS21060	0.15	+0.5
4,711,005	-		HER17_RS21060	0.15	-0.3
4,711,005	-		HER17_RS21060	0.15	-0.6
4,711,005	-		HER17_RS21060	0.15	+0.2
4,711,005	-		HER17_RS21060	0.15	-0.8
4,711,027	+		HER17_RS21060	0.19	-0.6
4,711,027	+		HER17_RS21060	0.19	+0.0
4,711,027	+		HER17_RS21060	0.19	-1.0
4,711,027	+		HER17_RS21060	0.19	-0.2
4,711,028	-		HER17_RS21060	0.19	-1.0
4,711,028	-		HER17_RS21060	0.19	+0.7
4,711,028	-		HER17_RS21060	0.19	-0.6
4,711,028	-		HER17_RS21060	0.19	+0.8
4,711,051	+		HER17_RS21060	0.23	-0.9
4,711,051	+		HER17_RS21060	0.23	+1.5
4,711,051	+		HER17_RS21060	0.23	-0.5
4,711,051	+		HER17_RS21060	0.23	+0.0
4,711,051	+		HER17_RS21060	0.23	+0.6
4,711,056	+		HER17_RS21060	0.24	-0.3
4,711,056	+		HER17_RS21060	0.24	+0.6
4,711,056	+		HER17_RS21060	0.24	-1.2
4,711,059	+		HER17_RS21060	0.25	-1.8
4,711,059	+		HER17_RS21060	0.25	-0.4
4,711,059	+		HER17_RS21060	0.25	+0.4
4,711,059	+		HER17_RS21060	0.25	+0.1
4,711,091	+		HER17_RS21060	0.30	+0.5
4,711,255	-		HER17_RS21060	0.59	-0.5
4,711,280	-		HER17_RS21060	0.63	+0.0
4,711,280	-		HER17_RS21060	0.63	-1.6
4,711,299	-		HER17_RS21060	0.66	-0.4
4,711,324	+		HER17_RS21060	0.71	+1.2
4,711,324	+		HER17_RS21060	0.71	+0.9
4,711,324	+		HER17_RS21060	0.71	+0.9
4,711,324	+		HER17_RS21060	0.71	+1.3
4,711,324	+		HER17_RS21060	0.71	-0.3
4,711,324	+		HER17_RS21060	0.71	+2.5
4,711,324	+		HER17_RS21060	0.71	-0.7
4,711,325	-		HER17_RS21060	0.71	+1.5
4,711,325	-		HER17_RS21060	0.71	+0.3
4,711,325	-		HER17_RS21060	0.71	+0.3
4,711,402	-		HER17_RS21060	0.84	-2.1
4,711,402	-		HER17_RS21060	0.84	+0.0
4,711,465	+				-0.3
4,711,466	-				+0.1