Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19815

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,448,748	+				-0.7
4,448,765	+				-0.8
4,448,766	-				-1.4
4,448,766	-				-0.9
4,448,766	-				+0.1
4,448,768	+				+2.0
4,448,816	+				+2.2
4,448,849	-		HER17_RS19810	0.10	+2.4
4,448,849	-		HER17_RS19810	0.10	+0.9
4,448,896	-		HER17_RS19810	0.16	-0.1
4,448,917	+		HER17_RS19810	0.18	+1.3
4,448,918	-		HER17_RS19810	0.19	+0.3
4,448,918	-		HER17_RS19810	0.19	+1.5
4,448,982	+		HER17_RS19810	0.26	+2.1
4,448,982	+		HER17_RS19810	0.26	+0.6
4,448,982	+		HER17_RS19810	0.26	+1.1
4,449,034	+		HER17_RS19810	0.33	-0.7
4,449,034	+		HER17_RS19810	0.33	+1.7
4,449,034	+		HER17_RS19810	0.33	+1.5
4,449,040	-		HER17_RS19810	0.33	+2.8
4,449,117	+		HER17_RS19810	0.43	-0.1
4,449,118	-		HER17_RS19810	0.43	+2.0
4,449,220	-		HER17_RS19810	0.55	+1.1
4,449,265	-		HER17_RS19810	0.61	+1.1
4,449,265	-		HER17_RS19810	0.61	+2.3
4,449,326	-		HER17_RS19810	0.68	+1.5
4,449,467	+		HER17_RS19810	0.85	+1.5
4,449,471	+		HER17_RS19810	0.85	-0.4
4,449,472	-		HER17_RS19810	0.86	+3.7
4,449,472	-		HER17_RS19810	0.86	+1.9
4,449,472	-		HER17_RS19810	0.86	+3.2
4,449,476	+		HER17_RS19810	0.86	+0.7
4,449,477	-		HER17_RS19810	0.86	-0.3
4,449,525	+				+0.8
4,449,526	-				+0.6
4,449,526	-				+0.8
4,449,526	-				+2.5
4,449,526	-				+2.2
4,449,526	-				+0.5
4,449,526	-				+1.6
4,449,533	-				+2.7
4,449,539	-				+1.6
4,449,607	-				-1.1
4,449,610	+				+1.6
4,449,610	+				+2.1
4,449,611	-				-1.4
4,449,622	+				-0.8
4,449,700	+				+2.0
4,449,701	-				-1.1
4,449,701	-				-0.2
4,449,736	+				+0.6
4,449,753	+		HER17_RS19815	0.12	+1.5
4,449,804	+		HER17_RS19815	0.24	+1.1
4,449,804	+		HER17_RS19815	0.24	-0.3
4,449,805	-		HER17_RS19815	0.25	+0.3
4,449,812	+		HER17_RS19815	0.26	+1.9
4,449,812	+		HER17_RS19815	0.26	+2.7
4,449,813	-		HER17_RS19815	0.26	-0.5
4,449,813	-		HER17_RS19815	0.26	+1.8
4,449,815	+		HER17_RS19815	0.27	+0.3
4,449,816	-		HER17_RS19815	0.27	+0.7
4,449,826	+		HER17_RS19815	0.29	+1.9
4,449,889	+		HER17_RS19815	0.44	-0.1
4,449,889	+		HER17_RS19815	0.44	-0.7
4,449,889	+		HER17_RS19815	0.44	-0.9
4,449,889	+		HER17_RS19815	0.44	-0.4
4,449,889	+		HER17_RS19815	0.44	-0.2
4,449,890	-		HER17_RS19815	0.44	-1.0
4,449,890	-		HER17_RS19815	0.44	-0.0
4,449,896	+		HER17_RS19815	0.46	+0.5
4,449,897	-		HER17_RS19815	0.46	-0.0
4,449,948	-		HER17_RS19815	0.58	-0.4
4,449,965	+		HER17_RS19815	0.62	+1.0
4,449,965	+		HER17_RS19815	0.62	-0.2
4,449,965	+		HER17_RS19815	0.62	-0.9
4,449,974	+		HER17_RS19815	0.64	-1.1
4,449,974	+		HER17_RS19815	0.64	+0.1
4,449,974	+		HER17_RS19815	0.64	+2.2
4,449,997	+		HER17_RS19815	0.69	+2.9
4,449,998	-		HER17_RS19815	0.69	+0.0
4,450,008	-		HER17_RS19815	0.72	-2.0
4,450,019	-		HER17_RS19815	0.74	-2.0
4,450,089	+				+0.3
4,450,090	-				-0.4
4,450,118	+				+0.2
4,450,118	+				-0.1
4,450,119	-				-1.1
4,450,119	-				-1.0
4,450,238	+		HER17_RS19820	0.16	-1.3
4,450,239	-		HER17_RS19820	0.16	-1.6
4,450,264	+		HER17_RS19820	0.20	-0.4
4,450,264	+		HER17_RS19820	0.20	-1.7
4,450,264	+		HER17_RS19820	0.20	-0.1
4,450,337	-		HER17_RS19820	0.32	-0.5
4,450,337	-		HER17_RS19820	0.32	-2.8
4,450,337	-		HER17_RS19820	0.32	-0.1
4,450,337	-		HER17_RS19820	0.32	-0.5
4,450,379	+		HER17_RS19820	0.39	+1.5
4,450,379	+		HER17_RS19820	0.39	-1.5
4,450,380	-		HER17_RS19820	0.39	-0.0
4,450,380	-		HER17_RS19820	0.39	-0.8
4,450,380	-		HER17_RS19820	0.39	-2.0
4,450,380	-		HER17_RS19820	0.39	-1.6
4,450,380	-		HER17_RS19820	0.39	-0.1
4,450,380	-		HER17_RS19820	0.39	-1.8
4,450,380	-		HER17_RS19820	0.39	-0.7
4,450,520	+		HER17_RS19820	0.61	+1.1
4,450,543	+		HER17_RS19820	0.64	-0.5
4,450,544	-		HER17_RS19820	0.65	-0.9
4,450,544	-		HER17_RS19820	0.65	-0.6
4,450,544	-		HER17_RS19820	0.65	-0.5
4,450,544	-		HER17_RS19820	0.65	-0.5
4,450,544	-		HER17_RS19820	0.65	+1.1
4,450,546	+		HER17_RS19820	0.65	-0.5
4,450,546	+		HER17_RS19820	0.65	+1.1
4,450,547	-		HER17_RS19820	0.65	-1.1
4,450,547	-		HER17_RS19820	0.65	+0.3
4,450,547	-		HER17_RS19820	0.65	-0.4
4,450,549	+		HER17_RS19820	0.65	+0.5
4,450,550	-		HER17_RS19820	0.66	+0.6
4,450,550	-		HER17_RS19820	0.66	+0.6
4,450,550	-		HER17_RS19820	0.66	-0.1
4,450,694	+		HER17_RS19820	0.88	-0.9
4,450,695	-		HER17_RS19820	0.88	-0.5
4,450,714	-				-1.1
4,450,721	-				-0.1
4,450,721	-				-2.6
4,450,741	-				+1.0
4,450,788	+				+1.5
4,450,788	+				+1.0
4,450,788	+				+3.4
4,450,788	+				+0.0
4,450,789	-				-0.5
4,450,789	-				-0.8
4,450,789	-				+1.0
4,450,789	-				-1.1
4,450,789	-				+0.5
4,450,791	+				-1.1
4,450,791	+				-1.0
4,450,792	-				-1.1
4,450,792	-				-0.9
4,450,809	+				+0.7
4,450,809	+				-0.1
4,450,810	-				+0.6
4,450,830	+				+0.3
4,450,831	-				-1.1
4,450,832	+				+0.7
4,450,832	+				+1.5
4,450,833	-				-0.9
4,450,833	-				-0.3
4,450,857	-				+0.1
4,450,918	+				-0.4
4,450,963	+				-0.2
4,450,963	+				+2.3
4,450,981	+				-0.4
4,450,982	-				-1.1
4,450,982	-				-0.1
4,450,982	-				-0.5
4,450,982	-				+0.9
4,451,009	+				-0.9
4,451,019	+				+1.5
4,451,020	-				+1.5
4,451,035	+				-0.0
4,451,036	-				-0.5
4,451,048	+				-1.5
4,451,048	+				+0.3
4,451,049	-				-0.0