Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19030

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,283,976	+		HER17_RS19025	0.33	-1.4
4,283,976	+		HER17_RS19025	0.33	+1.1
4,283,976	+		HER17_RS19025	0.33	-0.3
4,283,976	+		HER17_RS19025	0.33	-0.4
4,283,977	-		HER17_RS19025	0.33	-0.6
4,284,044	+		HER17_RS19025	0.38	-0.3
4,284,044	+		HER17_RS19025	0.38	+0.9
4,284,045	-		HER17_RS19025	0.38	+3.0
4,284,048	-		HER17_RS19025	0.39	+1.4
4,284,048	-		HER17_RS19025	0.39	+1.4
4,284,067	-		HER17_RS19025	0.40	+0.6
4,284,069	-		HER17_RS19025	0.40	-1.6
4,284,069	-		HER17_RS19025	0.40	+0.6
4,284,155	+		HER17_RS19025	0.47	-0.9
4,284,155	+		HER17_RS19025	0.47	-0.6
4,284,155	+		HER17_RS19025	0.47	+1.1
4,284,155	+		HER17_RS19025	0.47	-0.6
4,284,155	+		HER17_RS19025	0.47	-1.4
4,284,156	-		HER17_RS19025	0.47	-0.3
4,284,156	-		HER17_RS19025	0.47	+0.8
4,284,187	+		HER17_RS19025	0.50	-0.3
4,284,187	+		HER17_RS19025	0.50	+0.4
4,284,188	-		HER17_RS19025	0.50	-0.4
4,284,199	+		HER17_RS19025	0.51	-0.2
4,284,199	+		HER17_RS19025	0.51	-2.8
4,284,232	+		HER17_RS19025	0.53	-0.9
4,284,286	-		HER17_RS19025	0.58	+0.6
4,284,320	+		HER17_RS19025	0.60	+0.9
4,284,320	+		HER17_RS19025	0.60	+1.0
4,284,320	+		HER17_RS19025	0.60	+2.2
4,284,321	-		HER17_RS19025	0.60	-1.2
4,284,333	+		HER17_RS19025	0.61	-0.5
4,284,333	+		HER17_RS19025	0.61	-0.3
4,284,333	+		HER17_RS19025	0.61	-1.7
4,284,333	+		HER17_RS19025	0.61	-1.7
4,284,486	+		HER17_RS19025	0.73	-1.0
4,284,486	+		HER17_RS19025	0.73	-0.6
4,284,595	-		HER17_RS19025	0.82	-0.6
4,284,651	+		HER17_RS19025	0.86	+0.2
4,284,652	-		HER17_RS19025	0.87	+1.4
4,284,715	+				+1.0
4,284,716	-				+0.1
4,284,849	+				-0.3
4,284,849	+				+0.1
4,284,849	+				-1.2
4,284,849	+				+0.4
4,284,849	+				-0.4
4,284,849	+				+0.8
4,284,869	+				+2.0
4,284,916	+				+1.0
4,284,966	+				-1.9
4,284,966	+				-0.2
4,284,967	-				-0.7
4,284,967	-				+1.0
4,284,967	-				+3.5
4,284,992	-				-1.0
4,285,000	+				-2.2
4,285,000	+				-0.2
4,285,000	+				+0.6
4,285,178	+		HER17_RS19030	0.14	-1.2
4,285,197	+		HER17_RS19030	0.15	-0.9
4,285,198	-		HER17_RS19030	0.15	-0.4
4,285,240	-		HER17_RS19030	0.17	-0.4
4,285,249	+		HER17_RS19030	0.17	+4.5
4,285,268	+		HER17_RS19030	0.18	+0.6
4,285,319	+		HER17_RS19030	0.21	-0.6
4,285,319	+		HER17_RS19030	0.21	+1.1
4,285,320	-		HER17_RS19030	0.21	-0.8
4,285,331	+		HER17_RS19030	0.21	-0.2
4,285,331	+		HER17_RS19030	0.21	+1.0
4,285,331	+		HER17_RS19030	0.21	+0.7
4,285,331	+		HER17_RS19030	0.21	+0.8
4,285,332	-		HER17_RS19030	0.21	-1.2
4,285,332	-		HER17_RS19030	0.21	-1.3
4,285,332	-		HER17_RS19030	0.21	-1.2
4,285,332	-		HER17_RS19030	0.21	+0.3
4,285,332	-		HER17_RS19030	0.21	+0.3
4,285,349	+		HER17_RS19030	0.22	-0.7
4,285,349	+		HER17_RS19030	0.22	+1.8
4,285,350	-		HER17_RS19030	0.22	+2.2
4,285,350	-		HER17_RS19030	0.22	-1.0
4,285,383	+		HER17_RS19030	0.24	-1.0
4,285,383	+		HER17_RS19030	0.24	+0.0
4,285,463	+		HER17_RS19030	0.28	+1.3
4,285,463	+		HER17_RS19030	0.28	+1.3
4,285,502	+		HER17_RS19030	0.30	+1.3
4,285,503	-		HER17_RS19030	0.30	+0.4
4,285,518	+		HER17_RS19030	0.31	+1.8
4,285,534	+		HER17_RS19030	0.32	-2.7
4,285,537	+		HER17_RS19030	0.32	-1.2
4,285,538	-		HER17_RS19030	0.32	-1.6
4,285,544	+		HER17_RS19030	0.32	-1.5
4,285,544	+		HER17_RS19030	0.32	+1.6
4,285,544	+		HER17_RS19030	0.32	+0.4
4,285,545	-		HER17_RS19030	0.32	+0.0
4,285,557	-		HER17_RS19030	0.33	+0.1
4,285,607	+		HER17_RS19030	0.35	+2.0
4,285,607	+		HER17_RS19030	0.35	-0.3
4,285,607	+		HER17_RS19030	0.35	+1.0
4,285,608	-		HER17_RS19030	0.35	-0.6
4,285,647	+		HER17_RS19030	0.37	+0.2
4,285,647	+		HER17_RS19030	0.37	+0.4
4,285,647	+		HER17_RS19030	0.37	-0.2
4,285,648	-		HER17_RS19030	0.37	-0.5
4,285,648	-		HER17_RS19030	0.37	+1.0
4,285,713	+		HER17_RS19030	0.41	-0.4
4,285,714	-		HER17_RS19030	0.41	-0.6
4,285,745	+		HER17_RS19030	0.42	+0.2
4,285,745	+		HER17_RS19030	0.42	+0.6
4,285,746	-		HER17_RS19030	0.42	-0.6
4,285,766	+		HER17_RS19030	0.43	+1.0
4,285,766	+		HER17_RS19030	0.43	+0.9
4,285,767	-		HER17_RS19030	0.43	+0.8
4,285,767	-		HER17_RS19030	0.43	-0.9
4,285,769	+		HER17_RS19030	0.44	+1.7
4,285,770	-		HER17_RS19030	0.44	-1.2
4,285,814	+		HER17_RS19030	0.46	+0.7
4,285,840	+		HER17_RS19030	0.47	-0.3
4,285,841	-		HER17_RS19030	0.47	+2.4
4,285,845	+		HER17_RS19030	0.47	+0.2
4,285,846	-		HER17_RS19030	0.47	+1.4
4,285,849	-		HER17_RS19030	0.48	+0.4
4,285,849	-		HER17_RS19030	0.48	-0.6
4,285,849	-		HER17_RS19030	0.48	-0.2
4,285,868	-		HER17_RS19030	0.49	+0.2
4,285,868	-		HER17_RS19030	0.49	+0.6
4,285,886	+		HER17_RS19030	0.49	-1.7
4,285,887	-		HER17_RS19030	0.50	-0.6
4,285,948	-		HER17_RS19030	0.53	-1.1
4,285,948	-		HER17_RS19030	0.53	-1.6
4,285,966	+		HER17_RS19030	0.54	+0.7
4,286,032	+		HER17_RS19030	0.57	+0.8
4,286,032	+		HER17_RS19030	0.57	-1.2
4,286,033	-		HER17_RS19030	0.57	+0.6
4,286,059	+		HER17_RS19030	0.58	+0.8
4,286,087	-		HER17_RS19030	0.60	-1.6
4,286,128	-		HER17_RS19030	0.62	-0.5
4,286,163	+		HER17_RS19030	0.64	+1.4
4,286,164	-		HER17_RS19030	0.64	-0.4
4,286,164	-		HER17_RS19030	0.64	+3.2
4,286,164	-		HER17_RS19030	0.64	-1.2
4,286,165	+		HER17_RS19030	0.64	+1.4
4,286,166	-		HER17_RS19030	0.64	-0.6
4,286,171	-		HER17_RS19030	0.64	-1.2
4,286,223	-		HER17_RS19030	0.67	-1.6
4,286,223	-		HER17_RS19030	0.67	+0.4
4,286,227	+		HER17_RS19030	0.67	+0.4
4,286,228	-		HER17_RS19030	0.67	-1.4
4,286,228	-		HER17_RS19030	0.67	+0.1
4,286,270	-		HER17_RS19030	0.69	-0.9
4,286,323	-		HER17_RS19030	0.72	+1.0
4,286,323	-		HER17_RS19030	0.72	-0.2
4,286,340	+		HER17_RS19030	0.72	-0.2
4,286,374	+		HER17_RS19030	0.74	-1.2
4,286,379	-		HER17_RS19030	0.74	-1.0
4,286,381	+		HER17_RS19030	0.75	+1.0
4,286,382	-		HER17_RS19030	0.75	+0.5
4,286,382	-		HER17_RS19030	0.75	-2.4
4,286,432	+		HER17_RS19030	0.77	+4.2
4,286,432	+		HER17_RS19030	0.77	+1.0
4,286,450	+		HER17_RS19030	0.78	+1.1
4,286,450	+		HER17_RS19030	0.78	+0.0
4,286,450	+		HER17_RS19030	0.78	-0.2
4,286,451	-		HER17_RS19030	0.78	-0.0
4,286,451	-		HER17_RS19030	0.78	-1.4
4,286,454	+		HER17_RS19030	0.78	-2.2
4,286,454	+		HER17_RS19030	0.78	-1.2
4,286,455	-		HER17_RS19030	0.78	-1.0
4,286,455	-		HER17_RS19030	0.78	+1.4
4,286,455	-		HER17_RS19030	0.78	+0.4
4,286,455	-		HER17_RS19030	0.78	+0.1
4,286,457	+		HER17_RS19030	0.78	+0.9
4,286,457	+		HER17_RS19030	0.78	+0.8
4,286,458	-		HER17_RS19030	0.78	-0.4
4,286,458	-		HER17_RS19030	0.78	+0.1
4,286,477	+		HER17_RS19030	0.79	-2.2
4,286,477	+		HER17_RS19030	0.79	+1.5
4,286,478	-		HER17_RS19030	0.79	+0.8
4,286,652	+		HER17_RS19030	0.88	+0.4
4,286,652	+		HER17_RS19030	0.88	+0.6
4,286,652	+		HER17_RS19030	0.88	-0.9
4,286,652	+		HER17_RS19030	0.88	+0.4
4,286,652	+		HER17_RS19030	0.88	+0.8
4,286,652	+		HER17_RS19030	0.88	-1.2
4,286,652	+		HER17_RS19030	0.88	-1.9
4,286,653	-		HER17_RS19030	0.88	-0.8
4,286,653	-		HER17_RS19030	0.88	-0.8
4,286,653	-		HER17_RS19030	0.88	-0.9
4,286,653	-		HER17_RS19030	0.88	-0.6
4,286,661	+		HER17_RS19030	0.89	+0.0
4,286,661	+		HER17_RS19030	0.89	-0.6
4,286,661	+		HER17_RS19030	0.89	-0.5
4,286,661	+		HER17_RS19030	0.89	+1.4
4,286,661	+		HER17_RS19030	0.89	+0.4
4,286,662	-		HER17_RS19030	0.89	-1.2
4,286,662	-		HER17_RS19030	0.89	-0.6
4,286,667	+		HER17_RS19030	0.89	-0.2
4,286,667	+		HER17_RS19030	0.89	+0.0
4,286,668	-		HER17_RS19030	0.89	-0.6
4,286,668	-		HER17_RS19030	0.89	-2.2
4,286,682	+		HER17_RS19030	0.90	+1.4
4,286,682	+		HER17_RS19030	0.90	-0.9
4,286,683	-		HER17_RS19030	0.90	-0.9
4,286,683	-		HER17_RS19030	0.90	-0.2
4,286,683	-		HER17_RS19030	0.90	-2.3
4,286,705	+				+0.4
4,286,706	-				-0.9
4,286,745	+				+0.5
4,286,745	+				+0.1
4,286,746	-				-0.9
4,286,746	-				+1.0
4,286,746	-				+3.4
4,286,748	-				-0.4
4,286,748	-				+0.4
4,286,748	-				-1.8
4,286,811	+				+0.4
4,286,811	+				-1.4
4,286,811	+				+0.1
4,286,811	+				+0.1
4,286,811	+				-2.3
4,286,811	+				-0.2
4,286,811	+				-0.4
4,286,812	-				-0.1
4,286,812	-				+2.4
4,286,812	-				+0.5
4,286,812	-				-0.4
4,286,812	-				+0.2
4,286,813	+				-0.5
4,286,813	+				-0.4
4,286,814	-				+1.1
4,286,832	+				+0.3
4,286,832	+				-0.3
4,286,832	+				+1.1
4,286,832	+				+1.3
4,286,833	-				-0.6
4,286,833	-				-0.7
4,286,849	+				-1.4
4,286,849	+				-0.2
4,286,856	+				-0.5
4,286,856	+				-0.4
4,286,872	-				+0.7
4,286,873	+				+0.4
4,286,873	+				-0.6
4,286,873	+				+0.4
4,286,874	-				-1.6
4,286,874	-				-0.2
4,286,889	+				+0.7
4,286,889	+				-1.0
4,286,890	-				-0.1
4,286,890	-				-0.5
4,286,986	-				-0.5
4,287,168	+		HER17_RS19035	0.33	+0.4
4,287,168	+		HER17_RS19035	0.33	-0.9
4,287,168	+		HER17_RS19035	0.33	-0.5
4,287,168	+		HER17_RS19035	0.33	-1.9
4,287,169	-		HER17_RS19035	0.33	-0.6
4,287,256	-		HER17_RS19035	0.45	+0.2
4,287,256	-		HER17_RS19035	0.45	-2.0
4,287,301	+		HER17_RS19035	0.51	-1.4
4,287,301	+		HER17_RS19035	0.51	+0.7
4,287,302	-		HER17_RS19035	0.52	-1.9
4,287,320	-		HER17_RS19035	0.54	-0.7
4,287,320	-		HER17_RS19035	0.54	-1.9
4,287,320	-		HER17_RS19035	0.54	-0.4
4,287,333	+		HER17_RS19035	0.56	-0.6
4,287,334	-		HER17_RS19035	0.56	-2.2
4,287,354	+		HER17_RS19035	0.59	-0.9
4,287,355	-		HER17_RS19035	0.59	+0.2
4,287,539	+		HER17_RS19035	0.85	-0.2
4,287,570	+		HER17_RS19035	0.89	-2.0
4,287,573	+		HER17_RS19035	0.89	-0.6
4,287,573	+		HER17_RS19035	0.89	+1.4
4,287,574	-		HER17_RS19035	0.90	-1.6
4,287,574	-		HER17_RS19035	0.90	-0.5
4,287,574	-		HER17_RS19035	0.90	-0.6
4,287,633	+				-1.1
4,287,633	+				+1.4
4,287,688	+				-0.6
4,287,689	-				-1.7
4,287,689	-				+2.1
4,287,799	+				-0.7
4,287,799	+				-0.5
4,287,851	+				+0.8
4,287,852	-				+0.1
4,287,852	-				-0.3