Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS18925 and HER17_RS18930 are separated by 92 nucleotides HER17_RS18930 and HER17_RS18935 are separated by 38 nucleotides HER17_RS18935 and HER17_RS18940 are separated by 43 nucleotides HER17_RS18940 and HER17_RS18945 overlap by 4 nucleotides HER17_RS18945 and HER17_RS18950 are separated by 75 nucleotides
HER17_RS18925: HER17_RS18925 - DUF2798 domain-containing protein, at 4,246,380 to 4,246,643
_RS18925
HER17_RS18930: HER17_RS18930 - phosphonate metabolism protein PhnP, at 4,246,736 to 4,247,521
_RS18930
HER17_RS18935: HER17_RS18935 - ribose 1,5-bisphosphokinase, at 4,247,560 to 4,248,129
_RS18935
HER17_RS18940: HER17_RS18940 - putative phosphonate metabolism protein, at 4,248,173 to 4,248,460
_RS18940
HER17_RS18945: HER17_RS18945 - ATP-binding cassette domain-containing protein, at 4,248,457 to 4,248,678
_RS18945
HER17_RS18950: HER17_RS18950 - hypothetical protein, at 4,248,754 to 4,248,891
_RS18950
Position (kb) 4247
4248
4249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4246.601 kb on + strand, within HER17_RS18925 at 4246.601 kb on + strand, within HER17_RS18925 at 4246.602 kb on - strand, within HER17_RS18925 at 4246.602 kb on - strand, within HER17_RS18925 at 4246.602 kb on - strand, within HER17_RS18925 at 4246.618 kb on + strand at 4246.676 kb on - strand at 4246.695 kb on + strand at 4246.695 kb on + strand at 4246.695 kb on + strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.738 kb on - strand at 4246.762 kb on - strand at 4246.839 kb on + strand, within HER17_RS18930 at 4246.839 kb on + strand, within HER17_RS18930 at 4246.839 kb on + strand, within HER17_RS18930 at 4246.839 kb on + strand, within HER17_RS18930 at 4246.840 kb on - strand, within HER17_RS18930 at 4246.840 kb on - strand, within HER17_RS18930 at 4246.840 kb on - strand, within HER17_RS18930 at 4246.947 kb on + strand, within HER17_RS18930 at 4246.947 kb on + strand, within HER17_RS18930 at 4246.948 kb on - strand, within HER17_RS18930 at 4246.948 kb on - strand, within HER17_RS18930 at 4246.991 kb on + strand, within HER17_RS18930 at 4247.047 kb on - strand, within HER17_RS18930 at 4247.052 kb on + strand, within HER17_RS18930 at 4247.052 kb on + strand, within HER17_RS18930 at 4247.052 kb on + strand, within HER17_RS18930 at 4247.052 kb on + strand, within HER17_RS18930 at 4247.052 kb on + strand, within HER17_RS18930 at 4247.052 kb on + strand, within HER17_RS18930 at 4247.052 kb on + strand, within HER17_RS18930 at 4247.052 kb on + strand, within HER17_RS18930 at 4247.053 kb on - strand, within HER17_RS18930 at 4247.053 kb on - strand, within HER17_RS18930 at 4247.053 kb on - strand, within HER17_RS18930 at 4247.053 kb on - strand, within HER17_RS18930 at 4247.053 kb on - strand, within HER17_RS18930 at 4247.053 kb on - strand, within HER17_RS18930 at 4247.053 kb on - strand, within HER17_RS18930 at 4247.053 kb on - strand, within HER17_RS18930 at 4247.057 kb on + strand, within HER17_RS18930 at 4247.058 kb on - strand, within HER17_RS18930 at 4247.240 kb on + strand, within HER17_RS18930 at 4247.266 kb on - strand, within HER17_RS18930 at 4247.281 kb on + strand, within HER17_RS18930 at 4247.281 kb on + strand, within HER17_RS18930 at 4247.281 kb on + strand, within HER17_RS18930 at 4247.281 kb on + strand, within HER17_RS18930 at 4247.497 kb on + strand at 4247.509 kb on + strand at 4247.509 kb on + strand at 4247.509 kb on + strand at 4247.510 kb on - strand at 4247.510 kb on - strand at 4247.510 kb on - strand at 4247.653 kb on + strand, within HER17_RS18935 at 4247.831 kb on + strand, within HER17_RS18935 at 4247.832 kb on - strand, within HER17_RS18935 at 4247.873 kb on - strand, within HER17_RS18935 at 4247.873 kb on - strand, within HER17_RS18935 at 4247.891 kb on - strand, within HER17_RS18935 at 4247.903 kb on + strand, within HER17_RS18935 at 4247.903 kb on + strand, within HER17_RS18935 at 4247.903 kb on + strand, within HER17_RS18935 at 4247.985 kb on + strand, within HER17_RS18935 at 4247.986 kb on - strand, within HER17_RS18935 at 4247.986 kb on - strand, within HER17_RS18935 at 4248.001 kb on + strand, within HER17_RS18935 at 4248.002 kb on - strand, within HER17_RS18935 at 4248.023 kb on + strand, within HER17_RS18935 at 4248.023 kb on + strand, within HER17_RS18935 at 4248.024 kb on - strand, within HER17_RS18935 at 4248.024 kb on - strand, within HER17_RS18935 at 4248.113 kb on + strand at 4248.253 kb on + strand, within HER17_RS18940 at 4248.280 kb on + strand, within HER17_RS18940 at 4248.280 kb on + strand, within HER17_RS18940 at 4248.300 kb on - strand, within HER17_RS18940 at 4248.367 kb on + strand, within HER17_RS18940 at 4248.418 kb on + strand, within HER17_RS18940 at 4248.419 kb on - strand, within HER17_RS18940 at 4248.448 kb on + strand at 4248.449 kb on - strand at 4248.452 kb on - strand at 4248.452 kb on - strand at 4248.598 kb on + strand, within HER17_RS18945 at 4248.599 kb on - strand, within HER17_RS18945 at 4248.744 kb on + strand at 4248.753 kb on - strand at 4248.753 kb on - strand at 4248.811 kb on - strand, within HER17_RS18950 at 4248.889 kb on + strand at 4248.889 kb on + strand at 4248.890 kb on - strand at 4248.940 kb on + strand at 4248.941 kb on - strand at 4248.941 kb on - strand at 4248.975 kb on - strand at 4248.975 kb on - strand at 4249.006 kb on + strand at 4249.006 kb on + strand at 4249.006 kb on + strand at 4249.011 kb on - strand at 4249.011 kb on - strand at 4249.039 kb on - strand at 4249.040 kb on + strand at 4249.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 4,246,601 + HER17_RS18925 0.84 +0.1 4,246,601 + HER17_RS18925 0.84 +0.2 4,246,602 - HER17_RS18925 0.84 +0.7 4,246,602 - HER17_RS18925 0.84 +0.8 4,246,602 - HER17_RS18925 0.84 +0.9 4,246,618 + -1.3 4,246,676 - -0.0 4,246,695 + -0.5 4,246,695 + -0.4 4,246,695 + -2.3 4,246,696 - -0.4 4,246,696 - +0.1 4,246,738 - +1.0 4,246,762 - +0.3 4,246,839 + HER17_RS18930 0.13 +0.9 4,246,839 + HER17_RS18930 0.13 +0.3 4,246,839 + HER17_RS18930 0.13 -0.6 4,246,839 + HER17_RS18930 0.13 +0.5 4,246,840 - HER17_RS18930 0.13 -0.6 4,246,840 - HER17_RS18930 0.13 +2.0 4,246,840 - HER17_RS18930 0.13 +1.1 4,246,947 + HER17_RS18930 0.27 +1.4 4,246,947 + HER17_RS18930 0.27 -0.7 4,246,948 - HER17_RS18930 0.27 +0.8 4,246,948 - HER17_RS18930 0.27 -0.3 4,246,991 + HER17_RS18930 0.32 +1.3 4,247,047 - HER17_RS18930 0.40 +1.4 4,247,052 + HER17_RS18930 0.40 +0.5 4,247,052 + HER17_RS18930 0.40 +1.1 4,247,052 + HER17_RS18930 0.40 +1.4 4,247,052 + HER17_RS18930 0.40 +1.4 4,247,052 + HER17_RS18930 0.40 +0.7 4,247,052 + HER17_RS18930 0.40 +1.7 4,247,052 + HER17_RS18930 0.40 -2.3 4,247,052 + HER17_RS18930 0.40 +0.5 4,247,053 - HER17_RS18930 0.40 -1.6 4,247,053 - HER17_RS18930 0.40 +0.1 4,247,053 - HER17_RS18930 0.40 -0.2 4,247,053 - HER17_RS18930 0.40 +0.3 4,247,053 - HER17_RS18930 0.40 -0.2 4,247,053 - HER17_RS18930 0.40 +2.4 4,247,053 - HER17_RS18930 0.40 +0.3 4,247,053 - HER17_RS18930 0.40 +0.4 4,247,057 + HER17_RS18930 0.41 +1.8 4,247,058 - HER17_RS18930 0.41 -1.6 4,247,240 + HER17_RS18930 0.64 -1.2 4,247,266 - HER17_RS18930 0.67 +0.8 4,247,281 + HER17_RS18930 0.69 +0.1 4,247,281 + HER17_RS18930 0.69 +0.4 4,247,281 + HER17_RS18930 0.69 -0.6 4,247,281 + HER17_RS18930 0.69 -0.2 4,247,497 + -0.1 4,247,509 + +0.4 4,247,509 + -0.4 4,247,509 + +0.0 4,247,510 - -0.6 4,247,510 - -1.7 4,247,510 - -0.9 4,247,653 + HER17_RS18935 0.16 +0.4 4,247,831 + HER17_RS18935 0.48 -0.5 4,247,832 - HER17_RS18935 0.48 -0.1 4,247,873 - HER17_RS18935 0.55 +0.7 4,247,873 - HER17_RS18935 0.55 +0.4 4,247,891 - HER17_RS18935 0.58 +0.8 4,247,903 + HER17_RS18935 0.60 -1.5 4,247,903 + HER17_RS18935 0.60 +1.4 4,247,903 + HER17_RS18935 0.60 -0.6 4,247,985 + HER17_RS18935 0.75 +0.3 4,247,986 - HER17_RS18935 0.75 +0.6 4,247,986 - HER17_RS18935 0.75 -1.2 4,248,001 + HER17_RS18935 0.77 -2.8 4,248,002 - HER17_RS18935 0.78 +0.0 4,248,023 + HER17_RS18935 0.81 -0.9 4,248,023 + HER17_RS18935 0.81 -0.8 4,248,024 - HER17_RS18935 0.81 +0.6 4,248,024 - HER17_RS18935 0.81 -1.4 4,248,113 + -0.2 4,248,253 + HER17_RS18940 0.28 +0.4 4,248,280 + HER17_RS18940 0.37 +0.6 4,248,280 + HER17_RS18940 0.37 +0.9 4,248,300 - HER17_RS18940 0.44 +0.2 4,248,367 + HER17_RS18940 0.67 -0.9 4,248,418 + HER17_RS18940 0.85 -0.4 4,248,419 - HER17_RS18940 0.85 -0.2 4,248,448 + +1.4 4,248,449 - +6.2 4,248,452 - +1.1 4,248,452 - +0.3 4,248,598 + HER17_RS18945 0.64 +0.8 4,248,599 - HER17_RS18945 0.64 +1.1 4,248,744 + +0.1 4,248,753 - -1.0 4,248,753 - -0.3 4,248,811 - HER17_RS18950 0.41 -0.2 4,248,889 + +0.7 4,248,889 + -0.8 4,248,890 - -1.7 4,248,940 + -2.2 4,248,941 - -0.9 4,248,941 - -1.2 4,248,975 - -0.9 4,248,975 - -0.7 4,249,006 + +0.0 4,249,006 + +0.1 4,249,006 + -0.9 4,249,011 - +0.4 4,249,011 - -0.6 4,249,039 - -0.2 4,249,040 + +0.1 4,249,041 - -1.0
Or see this region's nucleotide sequence