Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17780

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,011,427	-				-1.2
4,011,448	+				+0.6
4,011,449	-				-0.1
4,011,449	-				+0.3
4,011,449	-				-0.3
4,011,449	-				-0.9
4,011,476	+				+0.1
4,011,477	-				-1.9
4,011,479	+				+1.0
4,011,479	+				-0.0
4,011,479	+				+1.2
4,011,479	+				-1.2
4,011,479	+				+0.5
4,011,597	-		HER17_RS17775	0.19	-0.9
4,011,607	-		HER17_RS17775	0.20	+0.6
4,011,607	-		HER17_RS17775	0.20	-2.4
4,011,897	-		HER17_RS17775	0.61	+0.2
4,011,897	-		HER17_RS17775	0.61	-0.1
4,012,005	+		HER17_RS17775	0.76	+1.1
4,012,006	-		HER17_RS17775	0.76	-0.2
4,012,016	+		HER17_RS17775	0.77	+1.1
4,012,083	+		HER17_RS17775	0.86	-0.8
4,012,083	+		HER17_RS17775	0.86	-0.8
4,012,083	+		HER17_RS17775	0.86	-0.6
4,012,083	+		HER17_RS17775	0.86	+0.4
4,012,121	-				-0.2
4,012,124	+				-0.3
4,012,124	+				-0.2
4,012,124	+				-0.6
4,012,125	-				-0.2
4,012,125	-				+0.4
4,012,125	-				-0.5
4,012,125	-				-0.2
4,012,125	-				+1.2
4,012,125	-				+3.2
4,012,168	+				+2.0
4,012,168	+				-0.3
4,012,174	+				+0.1
4,012,286	+				-1.5
4,012,286	+				-0.4
4,012,286	+				-1.4
4,012,286	+				+0.1
4,012,286	+				+1.8
4,012,286	+				+0.4
4,012,287	-				+1.4
4,012,287	-				+0.9
4,012,287	-				-0.7
4,012,287	-				-0.7
4,012,287	-				-1.6
4,012,287	-				-1.2
4,012,287	-				+1.4
4,012,290	+				-0.6
4,012,291	-				-0.6
4,012,291	-				+2.1
4,012,291	-				-0.4
4,012,291	-				-0.4
4,012,311	+				+2.2
4,012,311	+				-0.0
4,012,350	+				+0.5
4,012,356	+				+1.7
4,012,356	+				+0.2
4,012,357	-				+0.0
4,012,362	+				-1.4
4,012,362	+				+0.4
4,012,363	-				+0.2
4,012,363	-				-0.6
4,012,372	+				-1.4
4,012,433	-				-1.9
4,012,480	+				-0.9
4,012,480	+				-1.2
4,012,480	+				+0.1
4,012,481	-				+1.4
4,012,535	+		HER17_RS17780	0.14	+0.8
4,012,535	+		HER17_RS17780	0.14	+0.4
4,012,535	+		HER17_RS17780	0.14	-0.3
4,012,536	-		HER17_RS17780	0.14	-0.6
4,012,536	-		HER17_RS17780	0.14	+0.6
4,012,536	-		HER17_RS17780	0.14	-0.0
4,012,557	+		HER17_RS17780	0.15	+0.4
4,012,557	+		HER17_RS17780	0.15	-1.9
4,012,558	-		HER17_RS17780	0.15	-0.3
4,012,558	-		HER17_RS17780	0.15	+0.6
4,012,558	-		HER17_RS17780	0.15	+0.5
4,012,558	-		HER17_RS17780	0.15	-0.6
4,012,587	+		HER17_RS17780	0.17	+0.5
4,012,659	+		HER17_RS17780	0.22	+1.5
4,012,714	+		HER17_RS17780	0.26	-0.4
4,012,714	+		HER17_RS17780	0.26	-1.7
4,012,714	+		HER17_RS17780	0.26	-0.4
4,012,714	+		HER17_RS17780	0.26	+0.6
4,012,715	-		HER17_RS17780	0.26	+0.3
4,012,715	-		HER17_RS17780	0.26	-0.9
4,012,715	-		HER17_RS17780	0.26	+0.3
4,012,715	-		HER17_RS17780	0.26	-0.8
4,012,715	-		HER17_RS17780	0.26	+0.4
4,012,734	+		HER17_RS17780	0.27	-0.0
4,012,913	-		HER17_RS17780	0.39	+1.1
4,012,968	+		HER17_RS17780	0.43	-2.1
4,012,969	-		HER17_RS17780	0.43	-1.2
4,012,969	-		HER17_RS17780	0.43	+0.4
4,012,977	+		HER17_RS17780	0.43	-1.5
4,012,977	+		HER17_RS17780	0.43	-0.9
4,012,977	+		HER17_RS17780	0.43	+0.8
4,012,977	+		HER17_RS17780	0.43	-0.6
4,012,978	-		HER17_RS17780	0.43	+0.2
4,013,166	+		HER17_RS17780	0.56	+0.4
4,013,247	+		HER17_RS17780	0.62	+1.2
4,013,248	-		HER17_RS17780	0.62	+0.1
4,013,313	+		HER17_RS17780	0.66	-0.4
4,013,313	+		HER17_RS17780	0.66	+0.4
4,013,314	-		HER17_RS17780	0.66	+4.4
4,013,314	-		HER17_RS17780	0.66	-0.9
4,013,314	-		HER17_RS17780	0.66	+0.5
4,013,314	-		HER17_RS17780	0.66	+1.0
4,013,322	+		HER17_RS17780	0.67	+0.6
4,013,468	+		HER17_RS17780	0.76	-0.0
4,013,468	+		HER17_RS17780	0.76	+0.5
4,013,469	-		HER17_RS17780	0.76	-1.4
4,013,474	+		HER17_RS17780	0.77	-0.2
4,013,475	-		HER17_RS17780	0.77	+2.0
4,013,524	+		HER17_RS17780	0.80	-0.2
4,013,524	+		HER17_RS17780	0.80	-0.2
4,013,524	+		HER17_RS17780	0.80	+0.5
4,013,525	-		HER17_RS17780	0.80	-0.2
4,013,525	-		HER17_RS17780	0.80	+0.4
4,013,525	-		HER17_RS17780	0.80	+0.5
4,013,549	-		HER17_RS17780	0.82	+0.4
4,013,587	+		HER17_RS17780	0.84	+1.0
4,013,588	-		HER17_RS17780	0.85	-0.4
4,013,588	-		HER17_RS17780	0.85	+0.4
4,013,588	-		HER17_RS17780	0.85	-1.3
4,013,588	-		HER17_RS17780	0.85	+0.8
4,013,805	-				-0.9
4,013,815	+				+1.4
4,013,823	+				+1.0
4,013,823	+				-0.1
4,013,823	+				-1.5
4,013,824	-				+0.1
4,013,824	-				-0.9
4,013,871	+				+0.9
4,013,871	+				-0.9
4,013,872	-				+1.1
4,013,887	+				-1.9
4,013,887	+				+0.9
4,013,888	-				-1.6
4,013,942	-				-2.3
4,013,942	-				+0.8
4,013,942	-				+0.8
4,013,983	+		HER17_RS17785	0.11	-0.7
4,013,989	+		HER17_RS17785	0.12	+1.7
4,013,989	+		HER17_RS17785	0.12	+0.7
4,013,989	+		HER17_RS17785	0.12	+1.3
4,013,990	-		HER17_RS17785	0.12	+0.4
4,014,030	+		HER17_RS17785	0.16	+1.4
4,014,127	+		HER17_RS17785	0.27	+0.6
4,014,128	-		HER17_RS17785	0.27	+0.2
4,014,128	-		HER17_RS17785	0.27	-0.5
4,014,128	-		HER17_RS17785	0.27	-0.7
4,014,128	-		HER17_RS17785	0.27	+0.8
4,014,128	-		HER17_RS17785	0.27	+0.2
4,014,189	-		HER17_RS17785	0.33	-0.1
4,014,266	+		HER17_RS17785	0.42	+1.0
4,014,312	+		HER17_RS17785	0.47	+0.1
4,014,330	-		HER17_RS17785	0.49	+0.7
4,014,330	-		HER17_RS17785	0.49	-0.3
4,014,330	-		HER17_RS17785	0.49	+0.3
4,014,333	-		HER17_RS17785	0.49	-0.2
4,014,333	-		HER17_RS17785	0.49	+0.4
4,014,346	+		HER17_RS17785	0.50	+1.0
4,014,346	+		HER17_RS17785	0.50	+1.7
4,014,346	+		HER17_RS17785	0.50	-1.4
4,014,347	-		HER17_RS17785	0.51	+1.0
4,014,347	-		HER17_RS17785	0.51	-0.2
4,014,404	+		HER17_RS17785	0.57	+1.6
4,014,404	+		HER17_RS17785	0.57	+0.2
4,014,405	-		HER17_RS17785	0.57	+0.2
4,014,456	+		HER17_RS17785	0.62	+2.1
4,014,456	+		HER17_RS17785	0.62	-1.2
4,014,457	-		HER17_RS17785	0.62	+0.1
4,014,457	-		HER17_RS17785	0.62	-0.4
4,014,457	-		HER17_RS17785	0.62	+0.8
4,014,560	+		HER17_RS17785	0.74	+2.0
4,014,717	+				+0.2
4,014,718	-				+0.2
4,014,771	+				-0.0
4,014,783	-				+0.4
4,014,806	+				+1.0
4,014,807	-				-1.2
4,014,807	-				+2.5
4,014,817	-				+0.6
4,014,817	-				+0.8