Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16310

Experiment: Tuber-Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS16300 and HER17_RS16305 are separated by 21 nucleotidesHER17_RS16305 and HER17_RS16310 are separated by 9 nucleotidesHER17_RS16310 and HER17_RS16315 are separated by 198 nucleotides HER17_RS16300: HER17_RS16300 - sigma E protease regulator RseP, at 3,678,830 to 3,680,185 _RS16300 HER17_RS16305: HER17_RS16305 - phosphatidate cytidylyltransferase, at 3,680,207 to 3,681,064 _RS16305 HER17_RS16310: HER17_RS16310 - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 3,681,074 to 3,681,835 _RS16310 HER17_RS16315: HER17_RS16315 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,682,034 to 3,683,230 _RS16315 Position (kb) 3681 3682Strain fitness (log2 ratio) -1 0 1at 3680.186 kb on - strandat 3680.186 kb on - strandat 3680.190 kb on - strandat 3680.190 kb on - strandat 3680.196 kb on - strandat 3680.209 kb on - strandat 3680.219 kb on - strandat 3681.095 kb on - strandat 3681.095 kb on - strandat 3681.095 kb on - strandat 3681.866 kb on - strandat 3681.986 kb on - strandat 3681.988 kb on - strandat 3681.988 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
remove
3,680,186 - -0.4
3,680,186 - -1.4
3,680,190 - +0.5
3,680,190 - +1.5
3,680,196 - -0.2
3,680,209 - -0.1
3,680,219 - -0.8
3,681,095 - +1.4
3,681,095 - +0.2
3,681,095 - +0.4
3,681,866 - -0.1
3,681,986 - +0.4
3,681,988 - -1.0
3,681,988 - -1.6

Or see this region's nucleotide sequence