Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS13140

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
2,915,962	+		HER17_RS13130	0.72	+0.6
2,915,963	-		HER17_RS13130	0.73	+1.2
2,915,969	-		HER17_RS13130	0.76	-0.3
2,915,999	+				-1.0
2,916,005	+				-1.9
2,916,005	+				-0.7
2,916,005	+				-0.1
2,916,005	+				-0.3
2,916,005	+				-1.0
2,916,006	-				-0.5
2,916,020	+				-0.1
2,916,020	+				-0.9
2,916,020	+				-0.1
2,916,020	+				+0.9
2,916,020	+				+3.2
2,916,021	-				-0.3
2,916,021	-				-0.4
2,916,021	-				-1.4
2,916,081	+				-1.6
2,916,210	+		HER17_RS13135	0.22	-0.1
2,916,213	+		HER17_RS13135	0.22	-0.5
2,916,265	+		HER17_RS13135	0.27	+0.9
2,916,265	+		HER17_RS13135	0.27	-0.1
2,916,266	-		HER17_RS13135	0.28	-1.5
2,916,319	+		HER17_RS13135	0.33	-0.0
2,916,319	+		HER17_RS13135	0.33	+1.0
2,916,319	+		HER17_RS13135	0.33	+0.1
2,916,320	-		HER17_RS13135	0.33	+1.9
2,916,320	-		HER17_RS13135	0.33	-0.1
2,916,320	-		HER17_RS13135	0.33	-0.8
2,916,446	+		HER17_RS13135	0.47	-0.1
2,916,447	-		HER17_RS13135	0.47	+0.6
2,916,447	-		HER17_RS13135	0.47	+1.1
2,916,535	+		HER17_RS13135	0.56	+1.4
2,916,575	+		HER17_RS13135	0.61	-0.2
2,916,575	+		HER17_RS13135	0.61	-0.1
2,916,575	+		HER17_RS13135	0.61	-0.9
2,916,575	+		HER17_RS13135	0.61	+0.5
2,916,576	-		HER17_RS13135	0.61	-1.1
2,916,576	-		HER17_RS13135	0.61	+0.1
2,916,610	+		HER17_RS13135	0.65	+0.3
2,916,610	+		HER17_RS13135	0.65	+1.1
2,916,630	+		HER17_RS13135	0.67	-0.7
2,916,631	-		HER17_RS13135	0.67	+1.6
2,916,677	+		HER17_RS13135	0.72	+2.1
2,916,698	-		HER17_RS13135	0.74	-0.7
2,916,698	-		HER17_RS13135	0.74	+0.3
2,916,764	+		HER17_RS13135	0.81	+0.9
2,916,786	+		HER17_RS13135	0.83	-1.5
2,916,787	-		HER17_RS13135	0.84	+1.9
2,916,789	+		HER17_RS13135	0.84	-0.5
2,916,790	-		HER17_RS13135	0.84	-0.4
2,916,790	-		HER17_RS13135	0.84	-0.9
2,916,792	+		HER17_RS13135	0.84	-0.1
2,916,792	+		HER17_RS13135	0.84	-0.7
2,916,860	+				-1.0
2,916,861	-				-0.4
2,916,861	-				+0.4
2,916,861	-				-0.1
2,916,879	+				-2.7
2,916,879	+				+0.0
2,916,879	+				-0.1
2,916,880	-				+1.6
2,916,880	-				-0.5
2,916,882	+				+0.9
2,916,883	-				+1.6
2,916,909	+				-0.5
2,916,918	+				-0.9
2,916,986	+				-0.1
2,916,986	+				+0.5
2,916,986	+				-1.0
2,916,987	-				-0.4
2,916,987	-				+0.1
2,916,987	-				+1.7
2,916,987	-				-0.5
2,917,007	+				+0.1
2,917,008	-				-0.2
2,917,064	-				+1.0
2,917,064	-				+0.4
2,917,116	+				+0.1
2,917,117	-				+0.5
2,917,122	-				+0.6
2,917,122	-				+0.9
2,917,179	+				-0.0
2,917,260	+		HER17_RS13140	0.13	+1.9
2,917,261	-		HER17_RS13140	0.13	-0.5
2,917,423	-		HER17_RS13140	0.20	+0.9
2,917,434	+		HER17_RS13140	0.20	-0.5
2,917,435	-		HER17_RS13140	0.20	+1.3
2,917,435	-		HER17_RS13140	0.20	+0.8
2,917,435	-		HER17_RS13140	0.20	+0.9
2,917,443	-		HER17_RS13140	0.21	+0.3
2,917,451	+		HER17_RS13140	0.21	+0.3
2,917,465	+		HER17_RS13140	0.21	+0.9
2,917,473	-		HER17_RS13140	0.22	-2.6
2,917,572	+		HER17_RS13140	0.26	-1.1
2,917,572	+		HER17_RS13140	0.26	+0.9
2,917,572	+		HER17_RS13140	0.26	+1.2
2,917,573	-		HER17_RS13140	0.26	+0.1
2,917,573	-		HER17_RS13140	0.26	-0.5
2,917,574	+		HER17_RS13140	0.26	+0.5
2,917,575	-		HER17_RS13140	0.26	+0.9
2,917,575	-		HER17_RS13140	0.26	+0.4
2,917,638	+		HER17_RS13140	0.28	+0.9
2,917,638	+		HER17_RS13140	0.28	+0.1
2,917,639	-		HER17_RS13140	0.28	+0.3
2,917,639	-		HER17_RS13140	0.28	-1.1
2,917,647	+		HER17_RS13140	0.29	+0.1
2,917,648	-		HER17_RS13140	0.29	-0.7
2,917,713	+		HER17_RS13140	0.32	-0.1
2,917,713	+		HER17_RS13140	0.32	+1.9
2,917,757	+		HER17_RS13140	0.33	+2.2
2,917,757	+		HER17_RS13140	0.33	-1.9
2,917,758	-		HER17_RS13140	0.33	+0.9
2,917,761	+		HER17_RS13140	0.33	-0.1
2,917,761	+		HER17_RS13140	0.33	+0.0
2,917,761	+		HER17_RS13140	0.33	-0.5
2,917,762	-		HER17_RS13140	0.33	+0.4
2,917,762	-		HER17_RS13140	0.33	+0.6
2,917,762	-		HER17_RS13140	0.33	+0.1
2,917,770	+		HER17_RS13140	0.34	+0.3
2,917,770	+		HER17_RS13140	0.34	-1.9
2,917,770	+		HER17_RS13140	0.34	-1.7
2,917,773	+		HER17_RS13140	0.34	-1.5
2,917,774	-		HER17_RS13140	0.34	-0.5
2,917,850	+		HER17_RS13140	0.37	-0.4
2,917,851	-		HER17_RS13140	0.37	-0.1
2,917,908	+		HER17_RS13140	0.39	-0.5
2,917,908	+		HER17_RS13140	0.39	+0.9
2,917,909	-		HER17_RS13140	0.39	-0.4
2,917,909	-		HER17_RS13140	0.39	+0.4
2,917,909	-		HER17_RS13140	0.39	-1.1
2,918,099	+		HER17_RS13140	0.47	-2.1
2,918,099	+		HER17_RS13140	0.47	+1.5
2,918,414	-		HER17_RS13140	0.60	-1.3
2,918,414	-		HER17_RS13140	0.60	+0.9
2,918,423	-		HER17_RS13140	0.60	-1.1
2,918,457	-		HER17_RS13140	0.62	-0.2
2,918,458	+		HER17_RS13140	0.62	-0.5
2,918,459	-		HER17_RS13140	0.62	-0.1
2,918,459	-		HER17_RS13140	0.62	-1.6
2,918,459	-		HER17_RS13140	0.62	-0.3
2,918,459	-		HER17_RS13140	0.62	-0.1
2,918,480	-		HER17_RS13140	0.63	-2.1
2,918,552	+		HER17_RS13140	0.66	+0.5
2,918,552	+		HER17_RS13140	0.66	+0.2
2,918,553	-		HER17_RS13140	0.66	+0.1
2,918,654	-		HER17_RS13140	0.70	-0.5
2,918,654	-		HER17_RS13140	0.70	+0.9
2,918,654	-		HER17_RS13140	0.70	-0.1
2,918,654	-		HER17_RS13140	0.70	+0.7
2,918,745	-		HER17_RS13140	0.74	-1.2
2,918,778	-		HER17_RS13140	0.75	-1.2
2,918,972	+		HER17_RS13140	0.83	+1.2
2,918,972	+		HER17_RS13140	0.83	-1.3
2,918,973	-		HER17_RS13140	0.83	-0.8
2,919,019	+		HER17_RS13140	0.85	-1.1
2,919,019	+		HER17_RS13140	0.85	-0.5
2,919,019	+		HER17_RS13140	0.85	+0.9
2,919,020	-		HER17_RS13140	0.85	+3.1
2,919,020	-		HER17_RS13140	0.85	-0.7
2,919,074	+		HER17_RS13140	0.87	-2.2
2,919,075	-		HER17_RS13140	0.87	-0.1
2,919,080	+		HER17_RS13140	0.87	-0.9
2,919,081	-		HER17_RS13140	0.87	+1.2
2,919,110	+		HER17_RS13140	0.88	-1.1
2,919,110	+		HER17_RS13140	0.88	+0.9
2,919,111	-		HER17_RS13140	0.88	-0.0
2,919,111	-		HER17_RS13140	0.88	+0.1
2,919,126	-		HER17_RS13140	0.89	+2.5
2,919,152	+				-1.6
2,919,173	+				+2.5
2,919,173	+				+0.3
2,919,173	+				+0.5
2,919,174	-				-1.5
2,919,174	-				+0.3
2,919,174	-				+0.6
2,919,181	-				-0.5
2,919,189	+				-0.0
2,919,190	-				-0.7
2,919,275	+				+0.3
2,919,276	-				-0.3
2,919,327	+				-0.1
2,919,348	+				+4.3
2,919,396	-				-0.0
2,919,495	+				+0.1
2,919,519	+				+2.0
2,919,599	+				+0.7
2,919,603	+				+0.9
2,919,603	+				-1.1
2,919,604	-				+1.0
2,919,604	-				-2.3
2,919,604	-				+0.2
2,919,604	-				-1.5
2,919,645	+				-2.8
2,919,787	+		HER17_RS13150	0.25	-0.6
2,919,788	-		HER17_RS13150	0.26	-0.7
2,919,818	+		HER17_RS13150	0.35	-0.0
2,919,818	+		HER17_RS13150	0.35	+2.1
2,919,818	+		HER17_RS13150	0.35	-1.2
2,919,818	+		HER17_RS13150	0.35	-2.2
2,919,819	-		HER17_RS13150	0.35	-1.6
2,919,993	-		HER17_RS13150	0.89	-1.8
2,919,993	-		HER17_RS13150	0.89	-0.4
2,920,010	+				-1.6
2,920,038	-				-0.5
2,920,040	+				-2.5
2,920,041	-				+1.9
2,920,117	-				+0.6
2,920,143	+				-0.1
2,920,164	-				-2.1
2,920,164	-				+1.2
2,920,167	+				+0.9
2,920,167	+				+0.1
2,920,168	-				-1.1
2,920,168	-				+2.5
2,920,168	-				+0.7
2,920,191	+				+1.9
2,920,192	-				+0.6
2,920,215	-		HER17_RS13155	0.16	+0.9
2,920,222	-		HER17_RS13155	0.19	-0.7
2,920,268	+		HER17_RS13155	0.34	+0.2
2,920,268	+		HER17_RS13155	0.34	-0.9
2,920,268	+		HER17_RS13155	0.34	-0.4
2,920,269	-		HER17_RS13155	0.35	-0.1
2,920,272	+		HER17_RS13155	0.36	+0.9
2,920,272	+		HER17_RS13155	0.36	+1.2
2,920,272	+		HER17_RS13155	0.36	-1.3
2,920,272	+		HER17_RS13155	0.36	-1.7
2,920,350	+		HER17_RS13155	0.62	-0.4
2,920,351	-		HER17_RS13155	0.62	-0.9
2,920,356	-		HER17_RS13155	0.64	-0.4
2,920,393	-		HER17_RS13155	0.76	-0.1